mRNA_H-elongata_contig116165.1276.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116165.1276.1
Unique NamemRNA_H-elongata_contig116165.1276.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: D8LS91_ECTSI (Glycine amidinotransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS91_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.360e-44
Identity = 75/101 (74.26%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            IGNEIIEAPMAWRSRFFEYRPFRSLIK YF+QGGGW AAPKPEMSD LY+PE+ W+               GAG+FVTTE+EPVFDAAEFTRMGRDIF QR
Sbjct:  122 IGNEIIEAPMAWRSRFFEYRPFRSLIKDYFRQGGGWTAAPKPEMSDDLYVPEDKWQ--------------EGAGKFVTTEYEPVFDAAEFTRMGRDIFVQR 208
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BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A7S3MD50_9STRA (Glycine amidinotransferase, mitochondrial (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD50_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.350e-35
Identity = 63/101 (62.38%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            +GNEIIEAPMAWRSRFFEYRP+R LIK YF +G  W AAPKP MSD LY PE  ++             +  AG FVTTE EPVFDAAEFTR+G+D+F QR
Sbjct:  145 VGNEIIEAPMAWRSRFFEYRPYRKLIKEYFHKGAKWTAAPKPLMSDELYEPESTFK-------------AGHAGAFVTTEFEPVFDAAEFTRIGKDLFVQR 232
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BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A6G0WJQ3_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJQ3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.700e-34
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            +GNEIIEAPMAWRSR+FE+RPFRSL+K YF QG  W AAPKP+MSD LY   E+WE            PS+G  + V TE EP FDAAEFTRMGRD+F QR
Sbjct:  152 VGNEIIEAPMAWRSRYFEFRPFRSLVKEYFNQGAKWTAAPKPQMSDELY--NEDWE------------PSSGDFQSVVTEFEPTFDAAEFTRMGRDLFTQR 238
[Close]
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A1S3J2H9_LINUN (Glycine amidinotransferase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J2H9_LINUN)

HSP 1 Score: 127 bits (318), Expect = 1.020e-32
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            IG+EIIEAPMAWRSRFFEYR +RSLIK YF++G  W  APKP MSDALY  ++N+ +      + + +  A  G+FVTTEHEP FDAA+F R GRDIF QR
Sbjct:  169 IGDEIIEAPMAWRSRFFEYRAYRSLIKEYFRKGARWTTAPKPTMSDALY--DQNYPMSC----VEERHKLAAQGKFVTTEHEPCFDAADFMRAGRDIFAQR 263
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BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A485K2Z9_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2Z9_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.650e-32
Identity = 62/101 (61.39%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            +GNE+IEAPMAWRSR+FE+RP+RSLIK YF QG  W AAPKP+MSD LY  +E WE            PS+   + V TE EP FDAAEFTRMGRD+F QR
Sbjct:  159 VGNEVIEAPMAWRSRYFEFRPYRSLIKEYFHQGAKWTAAPKPQMSDELY--DEQWE------------PSSVNFQSVVTEFEPTFDAAEFTRMGRDLFTQR 245
[Close]
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A024USX0_9STRA (Glycine amidinotransferase, mitochondrial n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024USX0_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.080e-32
Identity = 61/101 (60.40%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            +GNEIIEAPMAWRSR+FE+RP+R L+K YF QG  W AAPKP+MSDALY   E+WE            P++G    V TE EP FDAAEFTRMGRD+F Q+
Sbjct:  152 VGNEIIEAPMAWRSRYFEFRPYRPLLKEYFHQGAKWTAAPKPQMSDALY--NEDWE------------PASGDFNSVVTEFEPTFDAAEFTRMGRDLFTQQ 238
[Close]
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A067CLA6_SAPPC (Glycine amidinotransferase, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLA6_SAPPC)

HSP 1 Score: 125 bits (314), Expect = 2.280e-32
Identity = 60/101 (59.41%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            +GNEIIEAPMAWRSR+FE+RPFRSL+K YF+ G  W AAPKP+MSD LY   E+W+            P++G    V TE EP FDAAEFTRMG+D+F QR
Sbjct:  136 VGNEIIEAPMAWRSRYFEFRPFRSLVKEYFRNGAKWTAAPKPQMSDELY--NEDWQ------------PNSGEFNSVVTEFEPTFDAAEFTRMGKDLFTQR 222
[Close]
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A024G9P6_9STRA (Glycine amidinotransferase, mitochondrial n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9P6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.620e-32
Identity = 63/100 (63.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    4 GNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            G+EI+EAPMAWRSRFFEYRP+R+LIK YF+QG  W AAPKP+MS+ LY   ENW+            P  GA   V TE EP FDAAEFTRMGRDIF QR
Sbjct:  147 GDEIMEAPMAWRSRFFEYRPYRNLIKEYFKQGAHWTAAPKPQMSNELY--NENWK------------PENGAFESVITEFEPTFDAAEFTRMGRDIFTQR 232
[Close]
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: W2R0S0_PHYPN (Glycine amidinotransferase, mitochondrial n=19 Tax=Peronosporaceae TaxID=4777 RepID=W2R0S0_PHYPN)

HSP 1 Score: 125 bits (313), Expect = 3.350e-32
Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    4 GNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            GNEI+EAPMAWRSR+FE+RP+R LIK YFQ+GG W AAPKP+MSD LY   ENW+              +G    V TE EP FDAAEFTRMGRDIF Q+
Sbjct:  140 GNEIVEAPMAWRSRYFEFRPYRKLIKEYFQKGGKWTAAPKPQMSDELY--NENWQA------------ESGVFNSVITEFEPTFDAAEFTRMGRDIFTQQ 225
[Close]
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Match: A0A0P1ABH4_PLAHL (Glycine amidinotransferase, mitochondrial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABH4_PLAHL)

HSP 1 Score: 124 bits (312), Expect = 4.900e-32
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 IGNEIIEAPMAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVILFHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR 303
            +GNEIIEAPMAWRSR+FE+RP+R LIK YFQQGG W AAPKP+MSD LY   ++W+              +G    V TE EP FDAAEFTRMGRDIF Q+
Sbjct:  142 VGNEIIEAPMAWRSRYFEFRPYRKLIKEYFQQGGKWTAAPKPQMSDDLY--NDDWKA------------ESGVFNSVVTEFEPTFDAAEFTRMGRDIFTQQ 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116165.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS91_ECTSI1.360e-4474.26Glycine amidinotransferase, mitochondrial n=2 Tax=... [more]
A0A7S3MD50_9STRA8.350e-3562.38Glycine amidinotransferase, mitochondrial (Fragmen... [more]
A0A6G0WJQ3_9STRA3.700e-3463.37Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A1S3J2H9_LINUN1.020e-3261.39Glycine amidinotransferase n=1 Tax=Lingula unguis ... [more]
A0A485K2Z9_9STRA1.650e-3261.39Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
A0A024USX0_9STRA2.080e-3260.40Glycine amidinotransferase, mitochondrial n=8 Tax=... [more]
A0A067CLA6_SAPPC2.280e-3259.41Glycine amidinotransferase, mitochondrial n=4 Tax=... [more]
A0A024G9P6_9STRA2.620e-3263.00Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]
W2R0S0_PHYPN3.350e-3261.00Glycine amidinotransferase, mitochondrial n=19 Tax... [more]
A0A0P1ABH4_PLAHL4.900e-3260.40Glycine amidinotransferase, mitochondrial n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116165contigH-elongata_contig116165:1396..1897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue3.2e-30
Seed eggNOG ortholog2880.D8LS91
Preferred nameGATM
KEGG rclassRC00024,RC02749
KEGG koko:K00613
KEGG ReactionR00565,R01989
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
GOsGO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006082,GO:0006520,GO:0006575,GO:0006600,GO:0006601,GO:0006807,GO:0006950,GO:0006979,GO:0007275,GO:0007584,GO:0007610,GO:0007611,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009605,GO:0009611,GO:0009719,GO:0009725,GO:0009790,GO:0009888,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0014889,GO:0015067,GO:0015068,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019752,GO:0019866,GO:0031090,GO:0031099,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0040007,GO:0042060,GO:0042221,GO:0042246,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0043436,GO:0043500,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046689,GO:0048513,GO:0048568,GO:0048589,GO:0048731,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901652,GO:1901698,GO:1901700,GO:1990402
EggNOG free text desc.glycine amidinotransferase activity
EggNOG OGs2QVCA@2759,COG1834@1
EC2.1.4.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorymitochondrion
Exons2
Model size306
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116165.1276.1prot_H-elongata_contig116165.1276.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116165 1396..1870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.169628-CDS-H-elongata_contig116165:1395..14881622929675.169628-CDS-H-elongata_contig116165:1395..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116165 1396..1488 -
1691679115.1177819-CDS-H-elongata_contig116165:1395..14881691679115.1177819-CDS-H-elongata_contig116165:1395..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116165 1396..1488 -
1622929675.1938527-CDS-H-elongata_contig116165:1684..18701622929675.1938527-CDS-H-elongata_contig116165:1684..1870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116165 1685..1870 -
1691679115.1413944-CDS-H-elongata_contig116165:1684..18701691679115.1413944-CDS-H-elongata_contig116165:1684..1870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116165 1685..1870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.2088356-UTR-H-elongata_contig116165:1870..18971622929675.2088356-UTR-H-elongata_contig116165:1870..1897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116165 1871..1897 -
1691679115.1526823-UTR-H-elongata_contig116165:1870..18971691679115.1526823-UTR-H-elongata_contig116165:1870..1897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116165 1871..1897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116165.1276.1

>prot_H-elongata_contig116165.1276.1 ID=prot_H-elongata_contig116165.1276.1|Name=mRNA_H-elongata_contig116165.1276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MAWRSRFFEYRPFRSLIKYYFQQGGGWAAAPKPEMSDALYIPEENWEVIL
FHVIIRKNNPSAGAGRFVTTEHEPVFDAAEFTRMGRDIFCQR*
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mRNA from alignment at H-elongata_contig116165:1396..1897-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116165.1276.1 ID=mRNA_H-elongata_contig116165.1276.1|Name=mRNA_H-elongata_contig116165.1276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=502bp|location=Sequence derived from alignment at H-elongata_contig116165:1396..1897- (Himanthalia elongata Himel1 dioecious)
ATAGGCAACGAAATAATCGAGGCGCCTATGGCATGGCGCTCGCGATTCTT
CGAGTACCGCCCGTTCCGCTCTTTGATCAAGTACTACTTCCAACAAGGTG
GGGGGTGGGCGGCCGCCCCTAAGCCGGAGATGTCGGACGCCCTGTACATC
CCGGAAGAAAATTGGGAGGTGATCCTTTTCCACGTCATCATCAGAAAAAA
CAACCCCTCCGCGGTTCATGAAAATCTTCAGCTTACATAATATACATTTG
TTACAAGAATATCGGATGGCGGATGGGATGCACTGAACTGCTGGGTGTTT
AGGGCAAAGTAATACGAACAAACAGCGTCACAATCTATTGCTCCCGCGAC
CATCTCGCATTCCCCTTGATACCAATTGGCATGTGCTTCTCATGTAATAA
GTGTAGGAGGGAGCGGGTCGCTTCGTGACAACAGAGCATGAGCCCGTTTT
CGATGCTGCCGAGTTCACCAGAATGGGGCGCGATATATTCTGTCAGAGGT
AA
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Coding sequence (CDS) from alignment at H-elongata_contig116165:1396..1897-

>mRNA_H-elongata_contig116165.1276.1 ID=mRNA_H-elongata_contig116165.1276.1|Name=mRNA_H-elongata_contig116165.1276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig116165:1396..1897- (Himanthalia elongata Himel1 dioecious)
ATGGCATGGCGCTCGCGATTCTTCGAGTACCGCCCGTTCCGCTCTTTGAT
CAAGTACTACTTCCAACAAGGTGGGGGGTGGGCGGCCGCCCCTAAGCCGG
AGATGTCGGACGCCCTGTACATCCCGGAAGAAAATTGGGAGGTGATCCTT
TTCCACGTCATCATCAGAAAAAACAACCCCTCCGCGATGGCATGGCGCTC
GCGATTCTTCGAGTACCGCCCGTTCCGCTCTTTGATCAAGTACTACTTCC
AACAAGGTGGGGGGTGGGCGGCCGCCCCTAAGCCGGAGATGTCGGACGCC
CTGTACATCCCGGAAGAAAATTGGGAGGTGATCCTTTTCCACGTCATCAT
CAGAAAAAACAACCCCTCCGCGGGAGCGGGTCGCTTCGTGACAACAGAGC
ATGAGCCCGTTTTCGATGCTGCCGAGTTCACCAGAATGGGGCGCGATATA
TTCTGTCAGAGGTAAGGAGCGGGTCGCTTCGTGACAACAGAGCATGAGCC
CGTTTTCGATGCTGCCGAGTTCACCAGAATGGGGCGCGATATATTCTGTC
AGAGGTAA
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