mRNA_H-elongata_contig116057.1264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116057.1264.1
Unique NamemRNA_H-elongata_contig116057.1264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116057.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116057contigH-elongata_contig116057:328..1125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_001350.1
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.8948352-CDS-H-elongata_contig116057:327..4591622929673.8948352-CDS-H-elongata_contig116057:327..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116057 328..459 +
1691679114.6095788-CDS-H-elongata_contig116057:327..4591691679114.6095788-CDS-H-elongata_contig116057:327..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116057 328..459 +
1622929673.9113712-CDS-H-elongata_contig116057:1038..11251622929673.9113712-CDS-H-elongata_contig116057:1038..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116057 1039..1125 +
1691679114.6184347-CDS-H-elongata_contig116057:1038..11251691679114.6184347-CDS-H-elongata_contig116057:1038..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116057 1039..1125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116057.1264.1prot_H-elongata_contig116057.1264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116057 328..1125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116057.1264.1

>prot_H-elongata_contig116057.1264.1 ID=prot_H-elongata_contig116057.1264.1|Name=mRNA_H-elongata_contig116057.1264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
RDDCSLRSGPTQGVSLTREAAAFVSGEGKIDVFDGRTLCWTSYQVDGFLR
GTSVVGRSPAWFFNASSPGFQES
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mRNA from alignment at H-elongata_contig116057:328..1125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116057.1264.1 ID=mRNA_H-elongata_contig116057.1264.1|Name=mRNA_H-elongata_contig116057.1264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig116057:328..1125+ (Himanthalia elongata Himel1 dioecious)
CGCGATGATTGCTCGCTCCGCAGCGGTCCGACGCAGGGGGTTTCACTGAC
GCGCGAAGCTGCGGCGTTCGTCAGCGGCGAGGGCAAGATCGACGTCTTCG
ACGGGCGCACCCTGTGTTGGACTTCATATCAGGTACGCCACGGTGCCGTG
GAGCATTATCATACTACTAAGAAGGAGTGGATAGTGGTCTGCCCTATTCG
TGTGATGTGAAGTGTTTGCGTAAGCGATGGGCCGCCCAATGGTAGCCCCG
TCCGAATCGCGCGTAATTCGCATGTTGTTAGTCGCCTGACTGTCGCTGCC
TTCTTACCTGATGCCCGAATCTGGTGCATAGTTTAGAGAAGAAGTGTCTA
TTATGGTTTATAAGGTTTTGACCGTGCCGTGCCCGTCGCGAGGGCCAAAT
TTCGAAGACATGGTTGGCTAGACAGAGCTGGTTCGTGTATCGCTTTGAAT
GTGGTATTTTTGATTTGAGGGTTGGTTCAGAAATGGCGCGGTCGTGGCTC
GTCCGCATTACAACTATTTGCGGGCTTTAATGATCTTTCTCATTCCGCCC
CGGGGGGAAGAAACCCTTACTCAAAGCTGTCCCCGAACCCCTTTAGCGTC
CCGCATCGGAGCCTTATCCTCGAGAACCGATTTCGACCTCGACCTTGACC
CCCGCGGGTCAGTCCGCCCCTTTAACAATCCATACAAAATTCATACATTT
CACCGATGAAGGTGGACGGATTCCTACGAGGCACGAGCGTCGTCGGGAGA
TCGCCTGCGTGGTTTTTCAACGCCTCGTCGCCGGGTTTCCAAGAGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig116057:328..1125+

>mRNA_H-elongata_contig116057.1264.1 ID=mRNA_H-elongata_contig116057.1264.1|Name=mRNA_H-elongata_contig116057.1264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig116057:328..1125+ (Himanthalia elongata Himel1 dioecious)
CGCGATGATTGCTCGCTCCGCAGCGGTCCGACGCAGGGGGTTTCACTGAC
GCGCGAAGCTGCGGCGTTCGTCAGCGGCGAGGGCAAGATCGACGTCTTCG
ACGGGCGCACCCTGTGTTGGACTTCATATCAGCGCGATGATTGCTCGCTC
CGCAGCGGTCCGACGCAGGGGGTTTCACTGACGCGCGAAGCTGCGGCGTT
CGTCAGCGGCGAGGGCAAGATCGACGTCTTCGACGGGCGCACCCTGTGTT
GGACTTCATATCAGGTGGACGGATTCCTACGAGGCACGAGCGTCGTCGGG
AGATCGCCTGCGTGGTTTTTCAACGCCTCGTCGCCGGGTTTCCAAGAGAG
CGTGGACGGATTCCTACGAGGCACGAGCGTCGTCGGGAGATCGCCTGCGT
GGTTTTTCAACGCCTCGTCGCCGGGTTTCCAAGAGAGC
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