mRNA_H-elongata_contig116007.1259.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116007.1259.1
Unique NamemRNA_H-elongata_contig116007.1259.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116007.1259.1 vs. uniprot
Match: A0A6H5K5R7_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.710e-12
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 YTAAISARREDEGVAKSNRAAAYLKVGKHREALQDASAAVKLQPSEIALYRKG 159
            Y  AIS   E E +A+SNRAA YLK+GKH EALQDASAAVKL P+E+A YRKG
Sbjct:   27 YGEAISLGGEGEALARSNRAAVYLKLGKHTEALQDASAAVKLMPTEMAFYRKG 79
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BLAST of mRNA_H-elongata_contig116007.1259.1 vs. uniprot
Match: D8LF07_ECTSI (SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF07_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.320e-11
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 YTAAISARREDEGVAKSNRAAAYLKVGKHREALQDASAAVKLQPSEIALYRKG 159
            Y  AIS   E E +A+SNRAA YLK+ KH EALQDASAAVKL P+E+A YRKG
Sbjct:   27 YGEAISLGGEGEALARSNRAAVYLKLSKHTEALQDASAAVKLMPTEMAFYRKG 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116007.1259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5R7_9PHAE1.710e-1269.81CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LF07_ECTSI2.320e-1167.92SGT1 homologue n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116007contigH-elongata_contig116007:1871..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D8LF07
KEGG koko:K03595,ko:K09553,ko:K12795
KEGG Pathwayko04621,ko04626,ko05020,map04621,map04626,map05020
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,COG5091@1,KOG0548@2759,KOG1309@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03029,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.5131078-CDS-H-elongata_contig116007:1870..20321622929673.5131078-CDS-H-elongata_contig116007:1870..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116007 1871..2032 +
1691679114.4744692-CDS-H-elongata_contig116007:1870..20321691679114.4744692-CDS-H-elongata_contig116007:1870..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116007 1871..2032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116007.1259.1prot_H-elongata_contig116007.1259.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116007 1871..2032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116007.1259.1

>prot_H-elongata_contig116007.1259.1 ID=prot_H-elongata_contig116007.1259.1|Name=mRNA_H-elongata_contig116007.1259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
YTAAISARREDEGVAKSNRAAAYLKVGKHREALQDASAAVKLQPSEIALY
RKGR
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mRNA from alignment at H-elongata_contig116007:1871..2032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116007.1259.1 ID=mRNA_H-elongata_contig116007.1259.1|Name=mRNA_H-elongata_contig116007.1259.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig116007:1871..2032+ (Himanthalia elongata Himel1 dioecious)
TACACTGCGGCGATATCTGCGCGGAGGGAGGATGAAGGCGTGGCGAAGTC
CAACCGCGCGGCCGCGTACTTGAAGGTCGGCAAGCACCGAGAGGCCTTGC
AGGACGCCTCCGCGGCGGTCAAGCTTCAACCCTCGGAGATCGCTCTCTAC
AGAAAAGGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig116007:1871..2032+

>mRNA_H-elongata_contig116007.1259.1 ID=mRNA_H-elongata_contig116007.1259.1|Name=mRNA_H-elongata_contig116007.1259.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig116007:1871..2032+ (Himanthalia elongata Himel1 dioecious)
TACACTGCGGCGATATCTGCGCGGAGGGAGGATGAAGGCGTGGCGAAGTC
CAACCGCGCGGCCGCGTACTTGAAGGTCGGCAAGCACCGAGAGGCCTTGC
AGGACGCCTCCGCGGCGGTCAAGCTTCAACCCTCGGAGATCGCTCTCTAC
AGAAAAGGGCGATACACTGCGGCGATATCTGCGCGGAGGGAGGATGAAGG
CGTGGCGAAGTCCAACCGCGCGGCCGCGTACTTGAAGGTCGGCAAGCACC
GAGAGGCCTTGCAGGACGCCTCCGCGGCGGTCAAGCTTCAACCCTCGGAG
ATCGCTCTCTACAGAAAAGGGCGA
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