mRNA_H-elongata_contig115924.1254.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: D7FI20_ECTSI (Ferredoxin-dependent glutamate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI20_ECTSI) HSP 1 Score: 210 bits (534), Expect = 6.280e-67 Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKASDRLQAIWKAGETMLAS 426
V SGF +VRNL+LGADLCN+AR MMFALGC+QALKCGTNHCPTG+ATQDP+L GL V K RV+RFQQKTV ATEI+SAAGVS P+EL+R MIKLR++GV S+SYGELFPPC+ GSLLEG A++ LQ IW+ G+ LAS
Sbjct: 51 VTSGFGVVRNLSLGADLCNSARGMMFALGCIQALKCGTNHCPTGIATQDPKLMSGLHVPSKTERVRRFQQKTVHTATEIISAAGVSNPAELSRSMIKLRRDGVNSASYGELFPPCQPGSLLEGAAAEPLQEIWRQGQAKLAS 192
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A6H5JVG8_9PHAE (Glu_synthase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG8_9PHAE) HSP 1 Score: 209 bits (531), Expect = 2.830e-62 Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKASDRLQAIWKAGETMLAS 426
V SGF IVRNL+LGADLCN+AR MMFALGC+QALKCGTNHCPTG+ATQDP+L GL V K RV RFQQKTV ATEI+SAAGVS P+EL+R MIKLR++GV S+SYGELFPPC+ GSLLEG A++ LQ +W+ G+ LAS
Sbjct: 415 VTSGFGIVRNLSLGADLCNSARGMMFALGCIQALKCGTNHCPTGIATQDPKLMSGLHVPSKTERVLRFQQKTVHTATEIISAAGVSNPAELSRSMIKLRRDGVNSASYGELFPPCQPGSLLEGTAAEPLQEVWRQGQAKLAS 556
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A0L0FI59_9EUKA (Glu_synthase domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FI59_9EUKA) HSP 1 Score: 152 bits (383), Expect = 1.760e-43 Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKAS-DRLQAIWKAG 408
V SGF++VRNLALGAD+CN+ARAMMFALGC+QALKC +N CP+GVATQ+P L GL +DK +RV +Q+ TV AA I+ AAG P+ ++R + +R +GV +SY EL+P + GSLL+G A LQ IW AG
Sbjct: 81 VISGFSVVRNLALGADICNSARAMMFALGCIQALKCDSNKCPSGVATQNPALMAGLDPNDKSVRVFNYQKNTVDAALHIIGAAGYDSPAGVSRDHVMVRTDGVYCASYAELYPAVKPGSLLDGTAERQNLQQIWDAG 217
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A7S2AMM4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMM4_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.630e-40 Identity = 79/143 (55.24%), Postives = 97/143 (67.83%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELN-RHMIKLRKNGVQSS-SYGELFPPCESGSLLEGKASDRLQAIWKAGETMLA 423
V SGF++V+ LA GAD+CN+ARAMM ALGC+QALKC TN CPTG+ATQDP+L GLVV K IRVQ FQ++TV AA EI A GV+ P+ L H+ K G SY EL+P G LL G+A LQA W ET+++
Sbjct: 192 VLSGFSLVKTLASGADVCNSARAMMMALGCIQALKCNTNKCPTGIATQDPDLMAGLVVPTKAIRVQNFQEQTVHAALEITGAIGVTNPASLQPNHIYKRVGTGTHGVISYDELYPSVPFGCLLTGEAPPALQASWNRAETIVS 334
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A059X468_9BACT (Conserved region in glutamate synthase n=2 Tax=uncultured bacterium TaxID=77133 RepID=A0A059X468_9BACT) HSP 1 Score: 142 bits (358), Expect = 3.400e-40 Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLE 366
V SGF +V+N+ALGAD+CNAARAMM +LGC+QAL+C TN CPTGVATQDP+L KGL V DKK+RV F +TV AA E+M+AAG++ P +L+R I R + Q +Y E++P SLLE
Sbjct: 57 VHSGFDLVKNIALGADMCNAARAMMISLGCIQALECNTNTCPTGVATQDPKLWKGLNVDDKKVRVANFHNETVKAAVELMAAAGINHPDKLHRSHIYRRVSANQIQTYAEMYPYLLKNSLLE 178
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A3M1TPE1_9BACT (FMN-binding glutamate synthase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1TPE1_9BACT) HSP 1 Score: 150 bits (378), Expect = 5.560e-40 Identity = 77/133 (57.89%), Postives = 94/133 (70.68%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKASDRLQAIW 399
+A+GF IVR LALGADLCNAAR M+FALGC+QALKC TN CPTGVATQD L+KGL V K RV+ FQ KTV +A E++ AAG+ P+ L + + R + + GE+FP ESG+ LEGKA LQA W
Sbjct: 411 IATGFHIVRQLALGADLCNAARTMLFALGCIQALKCNTNRCPTGVATQDRALAKGLDVESKAWRVRNFQSKTVESALELIGAAGLDDPARLRPYHVVRRVSRTEVRHLGEIFPLVESGAFLEGKAPPELQAWW 543
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: UPI00198CAD12 (FMN-binding glutamate synthase family protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=UPI00198CAD12) HSP 1 Score: 144 bits (362), Expect = 1.300e-39 Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKASDRLQ 390
VA+GF IV+N+ALGAD+CNAAR MMFALGC+QAL+C N CPTGVATQD L KGLVV DKK+RV+ F +TV +A +++ AAG+ PS+L R + R + + SY E++P +GSLLE R +
Sbjct: 140 VATGFDIVKNIALGADMCNAARGMMFALGCIQALECNRNTCPTGVATQDQSLMKGLVVEDKKVRVKNFHSQTVASAVDLLGAAGLRTPSQLTRAYVNRRVSASKMQSYLEIYPYTPTGSLLETPYPSRFE 269
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A519KBF5_FLASP (FMN-binding glutamate synthase family protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A519KBF5_FLASP) HSP 1 Score: 146 bits (368), Expect = 1.020e-38 Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKA-SDRLQAIWKAGET 414
V SGF I+R L++GADLCN+AR MMFALGC+QAL+C N CPTGVATQDP+L+KGLV +K +RV R+Q +TV AA E+M++AG+ P + R ++ +R + S + ELFP + G LL+ + D L WKA +
Sbjct: 385 VISGFDIIRALSMGADLCNSARGMMFALGCIQALECHNNTCPTGVATQDPKLTKGLVPEEKSVRVARYQHETVRAAMELMASAGIDHPDNVGRDLVSMRIDKTHISKFSELFPELKKGCLLQAETVPDNLYYDWKAASS 523
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A2S1SJ69_9FLAO (FMN-binding glutamate synthase family protein n=1 Tax=Flavobacterium pallidum TaxID=2172098 RepID=A0A2S1SJ69_9FLAO) HSP 1 Score: 146 bits (368), Expect = 1.040e-38 Identity = 71/135 (52.59%), Postives = 97/135 (71.85%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLLEGKA-SDRLQAIWK 402
V SGF I+R L++GADLCN+AR MMFALGC+QAL+C N CPTGVATQDP L+KGLV K IRV R+Q +TV AA E+M++AG+ P ++ R ++ +R + + ++ ELFP + GSLL+ + D+L WK
Sbjct: 386 VVSGFDIIRALSMGADLCNSARGMMFALGCIQALECHANTCPTGVATQDPALTKGLVPEQKSIRVARYQHETVKAAMELMASAGIEHPDDVGRDLVSMRIDKINIQTFAELFPEPKKGSLLQSETVPDKLFYAWK 520
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Match: A0A1G8JHM8_9SPHI (Glutamate synthase domain-containing protein 2 n=13 Tax=Mucilaginibacter TaxID=423349 RepID=A0A1G8JHM8_9SPHI) HSP 1 Score: 146 bits (368), Expect = 1.270e-38 Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query: 1 VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPELSKGLVVSDKKIRVQRFQQKTVLAATEIMSAAGVSRPSELNRHMIKLRKNGVQSSSYGELFPPCESGSLL 363
VA+GF +V+N ALGAD+CN+AR MMFALGC+QAL+C TN CPTGVATQD L KGLVV DKK+RV F ++TV +A +++ AAG+S+P +L+R I R N Q +YGELFP GSLL
Sbjct: 386 VATGFDLVKNFALGADMCNSARGMMFALGCIQALECNTNTCPTGVATQDKSLMKGLVVDDKKVRVANFHRQTVSSAIQMIGAAGLSKPCDLHRMYIYRRVNHSQILTYGELFPYIPKGSLL 506 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115924.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115924.1254.1 >prot_H-elongata_contig115924.1254.1 ID=prot_H-elongata_contig115924.1254.1|Name=mRNA_H-elongata_contig115924.1254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp VASGFAIVRNLALGADLCNAARAMMFALGCVQALKCGTNHCPTGVATQDPback to top mRNA from alignment at H-elongata_contig115924:30..1731- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115924.1254.1 ID=mRNA_H-elongata_contig115924.1254.1|Name=mRNA_H-elongata_contig115924.1254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1702bp|location=Sequence derived from alignment at H-elongata_contig115924:30..1731- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115924:30..1731- >mRNA_H-elongata_contig115924.1254.1 ID=mRNA_H-elongata_contig115924.1254.1|Name=mRNA_H-elongata_contig115924.1254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig115924:30..1731- (Himanthalia elongata Himel1 dioecious)back to top |