mRNA_H-elongata_contig115802.1251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115802.1251.1
Unique NamemRNA_H-elongata_contig115802.1251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 9.410e-65
Identity = 106/116 (91.38%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXAGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSKKS      AG KK++NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.840e-58
Identity = 95/116 (81.90%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXAGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSKKS      AG K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 183 bits (464), Expect = 1.290e-57
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXAGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSKK+      AGSK+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.140e-57
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXAGSKKKSNK--RIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSKKS       G K K+ K  RIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.950e-57
Identity = 97/117 (82.91%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXAGS-KKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAK PSKK+      A   KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: K0TPB8_THAOC (Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPB8_THAOC)

HSP 1 Score: 182 bits (463), Expect = 8.770e-57
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 1 
Query:   25 STSTKMAKTPSKKSXXXXXX---AGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            ST+T MAKTPSK  XXXXXX   +G KK+S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   40 STATTMAKTPSKXXXXXXXXXXXSGDKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 163
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BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.280e-56
Identity = 94/119 (78.99%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXA---GSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSKK+          G+KK+S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
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BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 180 bits (456), Expect = 2.660e-56
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 1 
Query:   19 SLSTSTKMAKTPSKKSXXXXXXAGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            S ST   MAKTPSKK+       G  K+S KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 STSTIVTMAKTPSKKAAAPKKAGG--KRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 179 bits (454), Expect = 4.580e-56
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:   40 MAKTPSKKSXXXXXXAGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSK+S      A +  KS KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (454), Expect = 5.200e-56
Identity = 93/120 (77.50%), Postives = 105/120 (87.50%), Query Frame = 1 
Query:   40 MAKTPSK----KSXXXXXXAGSKKKSNKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 387
            MAKTPSK    K+         KK+S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115802.1251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI9.410e-6591.38Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA3.840e-5881.90Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
H2B_OLILU1.290e-5781.03Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA2.140e-5781.36Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJ22_9STRA5.950e-5782.91Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
K0TPB8_THAOC8.770e-5782.26Histone H2B n=1 Tax=Thalassiosira oceanica TaxID=1... [more]
A0A7S2P1D6_9STRA1.280e-5678.99Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
A0A6U6DWX5_9STRA2.660e-5678.05Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B7FWR8_PHATC4.580e-5680.17Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
B8BX20_THAPS5.200e-5677.50Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115802contigH-elongata_contig115802:1000..1389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue1.9e-49
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.8259861-CDS-H-elongata_contig115802:999..13891622929671.8259861-CDS-H-elongata_contig115802:999..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115802 1000..1389 +
1691679113.9087327-CDS-H-elongata_contig115802:999..13891691679113.9087327-CDS-H-elongata_contig115802:999..1389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115802 1000..1389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115802.1251.1prot_H-elongata_contig115802.1251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115802 1000..1389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115802.1251.1

>prot_H-elongata_contig115802.1251.1 ID=prot_H-elongata_contig115802.1251.1|Name=mRNA_H-elongata_contig115802.1251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
VSHISSSLSTSTKMAKTPSKKSAKAPKKAGSKKKSNKRIESYSSYIYKVL
KQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQ
TAVRLMLPGELAKHAVSEGTKAVTKFTSS*
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mRNA from alignment at H-elongata_contig115802:1000..1389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115802.1251.1 ID=mRNA_H-elongata_contig115802.1251.1|Name=mRNA_H-elongata_contig115802.1251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig115802:1000..1389+ (Himanthalia elongata Himel1 dioecious)
GTCTCTCATATTAGCTCTAGTCTCTCTACATCTACCAAGATGGCAAAGAC
TCCCTCTAAGAAGTCCGCGAAGGCACCCAAGAAGGCCGGCAGCAAGAAGA
AGTCAAACAAGAGGATTGAGTCCTACTCTTCGTACATCTACAAGGTGCTG
AAACAAGTCCACCCGGACACCGGTATCTCAAAGCGTGGGATGTCCATTAT
GAACTCGTTTATCAACGACGTGTTCGAGCGCGTGGCCGGTGAGTCGGGTA
AGCTTACCCGCTACAACAAAAAAGCCACTCTTTCCTCGCGCGAGGTGCAG
ACCGCGGTGCGCCTAATGCTTCCTGGAGAGCTCGCCAAGCACGCAGTGTC
TGAGGGCACCAAAGCTGTTACTAAGTTCACCTCGTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig115802:1000..1389+

>mRNA_H-elongata_contig115802.1251.1 ID=mRNA_H-elongata_contig115802.1251.1|Name=mRNA_H-elongata_contig115802.1251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig115802:1000..1389+ (Himanthalia elongata Himel1 dioecious)
GTCTCTCATATTAGCTCTAGTCTCTCTACATCTACCAAGATGGCAAAGAC
TCCCTCTAAGAAGTCCGCGAAGGCACCCAAGAAGGCCGGCAGCAAGAAGA
AGTCAAACAAGAGGATTGAGTCCTACTCTTCGTACATCTACAAGGTGCTG
AAACAAGTCCACCCGGACACCGGTATCTCAAAGCGTGGGATGTCCATTAT
GAACTCGTTTATCAACGACGTGTTCGAGCGCGTGGCCGGTGAGTCGGGTA
AGCTTACCCGCTACAACAAAAAAGCCACTCTTTCCTCGCGCGAGGTGCAG
ACCGCGGTGCGCCTAATGCTTCCTGGAGAGCTCGCCAAGCACGCAGTGTC
TGAGGGCACCAAAGCTGTTACTAAGTTCACCTCGTCCTGAGTCTCTCATA
TTAGCTCTAGTCTCTCTACATCTACCAAGATGGCAAAGACTCCCTCTAAG
AAGTCCGCGAAGGCACCCAAGAAGGCCGGCAGCAAGAAGAAGTCAAACAA
GAGGATTGAGTCCTACTCTTCGTACATCTACAAGGTGCTGAAACAAGTCC
ACCCGGACACCGGTATCTCAAAGCGTGGGATGTCCATTATGAACTCGTTT
ATCAACGACGTGTTCGAGCGCGTGGCCGGTGAGTCGGGTAAGCTTACCCG
CTACAACAAAAAAGCCACTCTTTCCTCGCGCGAGGTGCAGACCGCGGTGC
GCCTAATGCTTCCTGGAGAGCTCGCCAAGCACGCAGTGTCTGAGGGCACC
AAAGCTGTTACTAAGTTCACCTCGTCCTGA
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