mRNA_H-elongata_contig115796.1250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115796.1250.1
Unique NamemRNA_H-elongata_contig115796.1250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A6H5JJU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU3_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 3.650e-49
Identity = 83/98 (84.69%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A KTADGASVLGGFGF+GYG DG+VVGW GVSNIDI+ FET+ +VATNTRAWNKR+QGWLERYVYMRT GNSL ATYFVSAFWHGFYPGYYLFFM
Sbjct:  318 YFFAWKTADGASVLGGFGFQGYGPDGQVVGWDGVSNIDIMTFETSCNVATNTRAWNKRTQGWLERYVYMRT-GNSLTATYFVSAFWHGFYPGYYLFFM 414
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A2P4YB31_9STRA (Lysophospholipid acyltransferase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YB31_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.970e-38
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+GA+VL GFGFEG+  DG   GW+GVSN+DI+ FE +  +   +RAWNK +Q WLERYVY RT GNSLMATYF+SAFWHGFYPGYYLFFM
Sbjct:   23 YYSAWKIAEGATVLCGFGFEGFNKDGSSRGWNGVSNMDILGFEFSQSIRAASRAWNKGTQNWLERYVYTRT-GNSLMATYFISAFWHGFYPGYYLFFM 119
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A662XBI7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBI7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.130e-37
Identity = 66/98 (67.35%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+GA+VL GFGFEG+  DG   GW+GVSN+DI+ FE A  +   +RAWNK +Q WLERYVY RT GNSLMATYF+SAFWHGFYPGYY FFM
Sbjct:  110 YYSAWKIAEGATVLSGFGFEGFNADGTSRGWNGVSNMDILGFEFAQSMRAASRAWNKGTQNWLERYVYTRT-GNSLMATYFISAFWHGFYPGYYFFFM 206
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: K3WUZ4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUZ4_GLOUD)

HSP 1 Score: 138 bits (348), Expect = 2.240e-37
Identity = 68/98 (69.39%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+GA+VL GFGFEG+  +GK  GW+GVSN+DI+ FE A  V   +RAWNK +Q WLERYVY RT GNSLMATYF+SAFWHGFYPGYYLFFM
Sbjct:  298 YYGAWKIAEGATVLCGFGFEGFTEEGKAKGWNGVSNMDIIGFEFAQSVREGSRAWNKGTQTWLERYVYART-GNSLMATYFISAFWHGFYPGYYLFFM 394
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A8K1CGW1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGW1_PYTOL)

HSP 1 Score: 139 bits (349), Expect = 6.730e-37
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+G++VL GFGFEGY  +GK  GW+GVSN+DIV FE A  +   +RAWNK +Q WLERYVY RT GNSLMATYFVSAFWHGFYPGYY+FF+
Sbjct:  298 YYSAWKIAEGSTVLAGFGFEGYTAEGKSRGWNGVSNMDIVGFEFAQSIRAASRAWNKGTQNWLERYVYTRT-GNSLMATYFVSAFWHGFYPGYYIFFL 394
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A3M6VA33_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA33_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.320e-36
Identity = 66/98 (67.35%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+GA+VL GFGFEG+  DG  +GW+GVSN+DI+ FE +  +   +RAWNK +Q WLERYVY RT GNSLMATYF+SAFWHGFYPGYYLFFM
Sbjct:  300 YYSAWKIAEGATVLCGFGFEGFSKDGSSLGWNGVSNMDILGFEFSQSIRAASRAWNKGTQNWLERYVYTRT-GNSLMATYFISAFWHGFYPGYYLFFM 396
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A7S2USG4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USG4_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.720e-36
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+G+S+  GFGF+G+  +GKV+GW G SN+DI+ FE  G+V+ N+RAWN+R+QGWLERYVY RT  +SL ATY VSAFWHGFYPGYYLFF+
Sbjct:  353 YYFAWKLAEGSSIFAGFGFQGFDKEGKVIGWSGASNMDILGFELGGNVSENSRAWNQRTQGWLERYVYART-NSSLTATYAVSAFWHGFYPGYYLFFL 449
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A1V9YKR0_9STRA (Lysophospholipid acyltransferase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YKR0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.760e-36
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K ++GA+VL GFGFEG+  DG   GW+GVSN+D+V FE A  +   +RAWNK +Q WLE+YVY RT GNSLMATYFVSAFWHGFYPGYY+FFM
Sbjct:  304 YYSAWKISEGATVLCGFGFEGFAADGSSKGWNGVSNMDVVGFEFAPSIREGSRAWNKGTQSWLEKYVYSRT-GNSLMATYFVSAFWHGFYPGYYIFFM 400
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A5D6Y2Z8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2Z8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 3.900e-36
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+GA+VL GFGFEG+  +GK  GW+GVSN+DIV FE A  V   +RAWNK +Q WLERYVY RT GNSL+ATYF+SAFWHGFYPGYYLFF+
Sbjct:  306 YYGAWKIAEGATVLCGFGFEGFTDEGKAKGWNGVSNMDIVGFELAQSVREGSRAWNKGTQTWLERYVYART-GNSLLATYFISAFWHGFYPGYYLFFL 402
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BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Match: A0A2D4C7B3_PYTIN (Lysophospholipid acyltransferase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7B3_PYTIN)

HSP 1 Score: 137 bits (344), Expect = 4.140e-36
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVATNTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM 294
            Y  A K A+G++VL GFGFEG+   G   GW+GVSN+DIV FE A  V   +RAWNK +Q WLERYVY RT GNSLMATYFVSAFWHGFYPGYYLFFM
Sbjct:  311 YYSAWKIAEGSTVLAGFGFEGFTEKGTARGWNGVSNMDIVGFEFAQSVREGSRAWNKGTQNWLERYVYTRT-GNSLMATYFVSAFWHGFYPGYYLFFM 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115796.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJU3_9PHAE3.650e-4984.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4YB31_9STRA1.970e-3867.35Lysophospholipid acyltransferase (Fragment) n=1 Ta... [more]
A0A662XBI7_9STRA2.130e-3767.35Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
K3WUZ4_GLOUD2.240e-3769.39Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CGW1_PYTOL6.730e-3768.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VA33_9STRA1.320e-3667.35Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7S2USG4_9STRA1.720e-3664.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1V9YKR0_9STRA3.760e-3666.33Lysophospholipid acyltransferase n=3 Tax=Saprolegn... [more]
A0A5D6Y2Z8_9STRA3.900e-3668.37Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4C7B3_PYTIN4.140e-3669.39Lysophospholipid acyltransferase, putative n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115796contigH-elongata_contig115796:178..1597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.8e-30
Seed eggNOG ortholog65071.PYU1_T008791
Preferred nameMBOAT1
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K13146,ko:K13517,ko:K13519
KEGG ReactionR01318,R02241,R03437,R04480,R09034,R09035,R09036,R09381
KEGG Pathwayko00561,ko00564,ko00565,ko01100,ko01110,map00561,map00564,map00565,map01100,map01110
KEGG ModuleM00089
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006658,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007009,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008354,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009653,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016411,GO:0016477,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0036150,GO:0036151,GO:0036152,GO:0040011,GO:0042171,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0047144,GO:0047184,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0061024,GO:0071617,GO:0071704,GO:0071840,GO:0090407,GO:0097164,GO:0098827,GO:1901564,GO:1901576
EggNOG free text desc.Lysophospholipid acyltransferase. Source PGD
EggNOG OGs1MCIA@121069,COG5202@1,KOG2704@2759
EC2.3.1.23,2.3.1.51
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionacyltransferase
Ec32 orthologEc-19_002900.1
Exons3
Model size297
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115796.1250.1prot_H-elongata_contig115796.1250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115796 178..1597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.7633624-CDS-H-elongata_contig115796:177..2761622929671.7633624-CDS-H-elongata_contig115796:177..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115796 178..276 +
1691679113.8652396-CDS-H-elongata_contig115796:177..2761691679113.8652396-CDS-H-elongata_contig115796:177..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115796 178..276 +
1622929671.7778041-CDS-H-elongata_contig115796:793..9081622929671.7778041-CDS-H-elongata_contig115796:793..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115796 794..908 +
1691679113.88522-CDS-H-elongata_contig115796:793..9081691679113.88522-CDS-H-elongata_contig115796:793..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115796 794..908 +
1622929671.7906325-CDS-H-elongata_contig115796:1514..15971622929671.7906325-CDS-H-elongata_contig115796:1514..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115796 1515..1597 +
1691679113.8982725-CDS-H-elongata_contig115796:1514..15971691679113.8982725-CDS-H-elongata_contig115796:1514..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115796 1515..1597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115796.1250.1

>prot_H-elongata_contig115796.1250.1 ID=prot_H-elongata_contig115796.1250.1|Name=mRNA_H-elongata_contig115796.1250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
YCLAGKTADGASVLGGFGFEGYGTDGKVVGWHGVSNIDIVAFETAGHVAT
NTRAWNKRSQGWLERYVYMRTVGNSLMATYFVSAFWHGFYPGYYLFFM*
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mRNA from alignment at H-elongata_contig115796:178..1597+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115796.1250.1 ID=mRNA_H-elongata_contig115796.1250.1|Name=mRNA_H-elongata_contig115796.1250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1420bp|location=Sequence derived from alignment at H-elongata_contig115796:178..1597+ (Himanthalia elongata Himel1 dioecious)
TACTGCCTTGCCGGAAAGACCGCAGACGGCGCGTCTGTCCTGGGAGGCTT
CGGCTTTGAGGGCTACGGCACTGACGGGAAGGTCGTCGGCTGGCATGGGG
TGAGGAAAAAGCAAATTACTACAACGATATAAACGCCTCTTGCGTACAAC
AGGGGGTGCAAGGGCGGGGCGGTGACGGCAACCAACCGCGGGCCCTCGTA
GTTTGAAGAAGAGCATGCGTGGGAGGCATACGTGATGATATCATAGCAAT
ATGGTCACCGAGGTCACCAGGCTTACCTTGAGCCTTACCATCCCAGCGCT
ACTTGAATACCAAACGACGATTTTCTTCTAAGACTTTAATGATTAGGCCT
TAACTATTGTGCGCCCTAGGCACTTGTTTTTTTGGCAAAATAATGACATA
TATATATATATATACATATAATAATATACACACACACACAAACGCGCTTG
TTTATTTGGAACTACGTACGAAGTATTTTTTTTAGTTTTAATTTTAATTT
CTAATTTCGCCGTCCGCGTTGCAATTTTCAGTATCCTTAAAAACATGTAC
ACATTTTTTTCCCAATACTTTATATTATACCTTTATCTTTTATCGTTTTC
CCTCTTCTTCTCGTAGGTGAGCAATATCGATATCGTAGCGTTCGAGACTG
CGGGGCACGTGGCCACAAACACGCGCGCCTGGAACAAGCGAAGCCAGGGC
TGGCTAGAGCGCTACGTTTACATGCGCACAGGTGGAATATCAAGGCGCGG
CGGGGCGGGCAGTCAGACATACCTCACGCTGTTTGCGGGGACGGCCTTTC
CTTAGGATCTCCCTTTTAATAATCCTAAGAGAGAGTTTTTCAGATGTTGC
TGGTAGTCTGAGAGGGCTGGCTAAGGCTAACTGTCCTACGCAATCTGCCA
TTCTACACGACTGTGGAAAAAAATCAGCCTACTTTCGTGCTTTCTTTCAC
TCTCTCTCTCATTTCGTCTCTCTGTCTGTCGACTCTTCTCTCTCGGAGAA
AGAGCCCGAGACGAGACAAAATTGCGCGAGGTGGAGGCGTAAAGTAATAT
TCCTATTTTGTGTACGATCGCGGCAGCGGAATAACGGAATAACGGTATAC
TTCGTACCGATATATTCTAAAGGCGACATCTTACGGATTGCTGATTCTCT
CCTATTTTTCTCTCTCCTCTGTACTCCTAACCGTACCCTTCCTATCTCTC
TCTCTCTCTTAATCGTACCGTACCCTCCCCACCTCGTCTTGCCTTGTGCC
TGGTGTTTGGCTCGGTCGTATCTTGACCCGATCTATCGACCTATCCACCC
ACGCAACCACCGACCGACGGACCGACCCCCCTCCGAGTAGGCAACAGCCT
GATGGCCACCTACTTCGTGTCGGCCTTCTGGCATGGATTCTATCCTGGCT
ACTACCTCTTCTTTATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig115796:178..1597+

>mRNA_H-elongata_contig115796.1250.1 ID=mRNA_H-elongata_contig115796.1250.1|Name=mRNA_H-elongata_contig115796.1250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig115796:178..1597+ (Himanthalia elongata Himel1 dioecious)
TACTGCCTTGCCGGAAAGACCGCAGACGGCGCGTCTGTCCTGGGAGGCTT
CGGCTTTGAGGGCTACGGCACTGACGGGAAGGTCGTCGGCTGGCATGGGT
ACTGCCTTGCCGGAAAGACCGCAGACGGCGCGTCTGTCCTGGGAGGCTTC
GGCTTTGAGGGCTACGGCACTGACGGGAAGGTCGTCGGCTGGCATGGGGT
GAGCAATATCGATATCGTAGCGTTCGAGACTGCGGGGCACGTGGCCACAA
ACACGCGCGCCTGGAACAAGCGAAGCCAGGGCTGGCTAGAGCGCTACGTT
TACATGCGCACAGGTGAGCAATATCGATATCGTAGCGTTCGAGACTGCGG
GGCACGTGGCCACAAACACGCGCGCCTGGAACAAGCGAAGCCAGGGCTGG
CTAGAGCGCTACGTTTACATGCGCACAGTAGGCAACAGCCTGATGGCCAC
CTACTTCGTGTCGGCCTTCTGGCATGGATTCTATCCTGGCTACTACCTCT
TCTTTATGTGATAGGCAACAGCCTGATGGCCACCTACTTCGTGTCGGCCT
TCTGGCATGGATTCTATCCTGGCTACTACCTCTTCTTTATGTGA
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