mRNA_H-elongata_contig115794.1249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115794.1249.1
Unique NamemRNA_H-elongata_contig115794.1249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 4.810e-34
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 AGYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTSE 297
            +GY++G+L SS+M G +  +YFW  VADR GRR V+L+ L+ST  L++AFGFS TF  AL CRF LG  +G+ ++   LVSEICGKEHE+VG+GAVTSE
Sbjct:    3 SGYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPTLVSEICGKEHEVVGLGAVTSE 101          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.010e-31
Identity = 57/99 (57.58%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 AGYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTSE 297
            +GY++G+L SS+M+G +  +YFW  +ADR GRR V+L+ L+ST  L++AFGFS TF  AL CRF LG  +G+ ++   LVSEICGKEHE+VG+GAVTSE
Sbjct:    3 SGYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACRFLLGLLNGMTVIFPSLVSEICGKEHEVVGLGAVTSE 101          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.910e-26
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 AGYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVT 291
            AGYY+G L S++M+G           ADRYGR  V+ IGLSS   LS+AFG S  FW AL CRF LGA +G++ ++K ++SEICGK+HE VGMG VT
Sbjct:   79 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVT 175          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 4.310e-26
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 AGYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVT 291
            AGYY+G L S++M+G           ADRYGR  V+ IGLSS   LS+AFG S  FW AL CRF LGA +G++ ++K ++SEICGK+HE VGMG +T
Sbjct:   47 AGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYIT 143          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.800e-25
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 AGYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVT 291
            AGYY+G L S++M+G    S      ADRYGR  V+ IGLSS   LS+AFG S  FW AL CRF LGA + ++ ++K ++SEICGK+HE VGMG VT
Sbjct:  115 AGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVT 211          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A835Z5M2_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.570e-22
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    4 GYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVT 291
            GYY+G +  ++M+G    SY W R +D+YGR+  +LIG +S    S+ FG S   W+A+L R  LGA +G V   KV VSEICGK HE+ GMG +T
Sbjct:    4 GYYAGFIAGAFMLGRFASSYPWGRFSDKYGRKPALLIGAASVCVFSLGFGLSTELWVAVLMRLLLGALNGTVSTCKVCVSEICGKAHEVKGMGYIT 99          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A0K9QBB5_SPIOL (MFS domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QBB5_SPIOL)

HSP 1 Score: 97.4 bits (241), Expect = 1.340e-21
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    4 GYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTS 294
            GYY+G + S++M G    S FW ++ADRYGR+ +I+IG ++ V  +  FG S  FWMA+  RF LG+  GI+  AK  VSE+C +EH+ VGM  +T+
Sbjct:   76 GYYAGFIGSAFMFGRALTSVFWGKLADRYGRKPIIIIGTTAVVIFNTMFGLSVNFWMAVSSRFLLGSLCGILGPAKAYVSEVCREEHQAVGMSVITT 172          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A7C9AF44_OPUST (MFS domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF44_OPUST)

HSP 1 Score: 95.5 bits (236), Expect = 3.950e-21
Identity = 42/97 (43.30%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    4 GYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTS 294
            GYY+G + S++M+G    S FW  +ADRYGR+ V++ G ++ V  +  FG S  FWMA+  RF LG+ +G++  AK  +SE+C +EH+ VGM  +T+
Sbjct:   76 GYYAGFVGSAFMLGRALTSVFWGTIADRYGRKPVMIFGAAAVVIFNTLFGLSVNFWMAVSTRFLLGSLNGLLGPAKAYISEVCREEHQAVGMSVITT 172          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A7N0VNJ7_KALFE (MFS domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0VNJ7_KALFE)

HSP 1 Score: 95.1 bits (235), Expect = 9.350e-21
Identity = 45/97 (46.39%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    4 GYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTS 294
            G+Y+G + SSYM+G    S  W  VADRYGR+ V+L G  S V  +  FGFS  FWMA++ RF LG+  G++  AK  V E+C KEH+ +GM  +++
Sbjct:   83 GFYAGFVGSSYMVGRALTSIPWGVVADRYGRKPVLLCGTISVVVFNTLFGFSNKFWMAVVTRFFLGSLSGVLGPAKAYVMEVCRKEHQALGMSVIST 179          
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Match: A0A1D1ZE51_9ARAE (Putative peptide/nitrate transporter At3g43790 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZE51_9ARAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.470e-20
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    4 GYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAFGFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTS 294
            GYY+G + SS+M G    S FW  VADRYGR+ VI+ G  S +  +  FG S +FWMA+L RF LG  + +    K   SEIC +EH+ +GM  +T+
Sbjct:   77 GYYAGYVGSSFMFGRALTSLFWGVVADRYGRKPVIVFGTISVIIFNTLFGLSSSFWMAILTRFLLGCLNAVFAPIKAYASEICRQEHQSIGMSVITT 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115794.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV5_ECTSI4.810e-3458.59MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZQ3_9PHAE8.010e-3157.58MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4Q8_9PHAE3.910e-2654.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI4.310e-2653.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE2.800e-2554.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5M2_9STRA2.570e-2247.92Major facilitator superfamily domain-containing pr... [more]
A0A0K9QBB5_SPIOL1.340e-2146.39MFS domain-containing protein n=2 Tax=Spinacia ole... [more]
A0A7C9AF44_OPUST3.950e-2143.30MFS domain-containing protein (Fragment) n=1 Tax=O... [more]
A0A7N0VNJ7_KALFE9.350e-2146.39MFS domain-containing protein n=2 Tax=Kalanchoe fe... [more]
A0A1D1ZE51_9ARAE1.470e-2045.36Putative peptide/nitrate transporter At3g43790 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115794contigH-elongata_contig115794:820..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue6.2e-24
Seed eggNOG ortholog2880.D8LFV5
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.704254-CDS-H-elongata_contig115794:819..9311622929671.704254-CDS-H-elongata_contig115794:819..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115794 820..931 -
1691679113.8333495-CDS-H-elongata_contig115794:819..9311691679113.8333495-CDS-H-elongata_contig115794:819..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115794 820..931 -
1622929671.7224293-CDS-H-elongata_contig115794:1109..12971622929671.7224293-CDS-H-elongata_contig115794:1109..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115794 1110..1297 -
1691679113.8516805-CDS-H-elongata_contig115794:1109..12971691679113.8516805-CDS-H-elongata_contig115794:1109..1297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115794 1110..1297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115794.1249.1prot_H-elongata_contig115794.1249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115794 820..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115794.1249.1

>prot_H-elongata_contig115794.1249.1 ID=prot_H-elongata_contig115794.1249.1|Name=mRNA_H-elongata_contig115794.1249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
AGYYSGILISSYMIGTIFMSYFWVRVADRYGRRKVILIGLSSTVTLSIAF
GFSQTFWMALLCRFSLGACDGIVIVAKVLVSEICGKEHEIVGMGAVTSE*
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mRNA from alignment at H-elongata_contig115794:820..1297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115794.1249.1 ID=mRNA_H-elongata_contig115794.1249.1|Name=mRNA_H-elongata_contig115794.1249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at H-elongata_contig115794:820..1297- (Himanthalia elongata Himel1 dioecious)
GCAGGATACTACTCCGGAATACTGATATCAAGCTACATGATCGGCACAAT CTTTATGTCCTATTTTTGGGTGAGGGTTGCTGATCGATACGGGCGGCGAA AGGTGATCCTTATCGGATTGTCGTCAACAGTCACGCTTTCCATAGCGTTC GGGTTTTCCCAAACCTTCTGGATGGCGCTTCTCTGCAGGTGACGGTTATA TCTTTATGGGGTTGCGTGAAGTCGTGAGGTGATGATACTTGCCAGAATTG TATCGGTATCACTTGTTCGTAATGCGCTCGATTTATAAAATATTTCCGGT GATTAATGGTCAGAATTTAGGGTTTTGTTGACGCCTCGTCGTGCACTCAT TACACAACTTCAATAGGTTCTCACTCGGAGCGTGTGATGGAATAGTAATC GTGGCCAAGGTTCTTGTATCTGAGATTTGCGGAAAGGAGCATGAGATCGT CGGAATGGGTGCCGTTACAAGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig115794:820..1297-

>mRNA_H-elongata_contig115794.1249.1 ID=mRNA_H-elongata_contig115794.1249.1|Name=mRNA_H-elongata_contig115794.1249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig115794:820..1297- (Himanthalia elongata Himel1 dioecious)
GCAGGATACTACTCCGGAATACTGATATCAAGCTACATGATCGGCACAAT
CTTTATGTCCTATTTTTGGGTGAGGGTTGCTGATCGATACGGGCGGCGAA
AGGTGATCCTTATCGGATTGTCGTCAACAGTCACGCTTTCCATAGCGTTC
GGGTTTTCCCAAACCTTCTGGATGGCGCTTCTCTGCAGGCAGGATACTAC
TCCGGAATACTGATATCAAGCTACATGATCGGCACAATCTTTATGTCCTA
TTTTTGGGTGAGGGTTGCTGATCGATACGGGCGGCGAAAGGTGATCCTTA
TCGGATTGTCGTCAACAGTCACGCTTTCCATAGCGTTCGGGTTTTCCCAA
ACCTTCTGGATGGCGCTTCTCTGCAGGTTCTCACTCGGAGCGTGTGATGG
AATAGTAATCGTGGCCAAGGTTCTTGTATCTGAGATTTGCGGAAAGGAGC
ATGAGATCGTCGGAATGGGTGCCGTTACAAGTGAGTGAGTTCTCACTCGG
AGCGTGTGATGGAATAGTAATCGTGGCCAAGGTTCTTGTATCTGAGATTT
GCGGAAAGGAGCATGAGATCGTCGGAATGGGTGCCGTTACAAGTGAGTGA
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