mRNA_H-elongata_contig11571.1244.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: D8LBF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBF2_ECTSI) HSP 1 Score: 273 bits (699), Expect = 1.250e-90 Identity = 129/199 (64.82%), Postives = 156/199 (78.39%), Query Frame = 1
Query: 1 VLPQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPGPTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLRV 597
++ FP+ FSA V+VTSH+VDRA+ YPPW R+M V YD AG+AKVVV +GLNAGKTFLR+Y SK+EYM+R GEY +CRRSYLGE MPTPE P TASF+ L+GL+CEHW+Q+DG S+VHIY+D TQAPRRLTEE + T +PLVTYD ++ PQA ELF LP+ Y EACDLHVGG+ Y+HLFHHYLRV
Sbjct: 26 IISHFPQHFSARVQVTSHMVDRAKGYPPWIREMDVAYDRAAGRAKVVVTKGLNAGKTFLRLYGSKREYMIRDGEYPACRRSYLGEEMPTPELPRTASFKDMQVLEGLMCEHWVQDDGVSRVHIYIDSATQAPRRLTEETVREDTTAVPLVTYDFMDLNIAPQAPELFLLPEPYIPR-EACDLHVGGFPYLHLFHHYLRV 223
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: A0A7S2S2S3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2S3_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.290e-61 Identity = 98/200 (49.00%), Postives = 137/200 (68.50%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMT-TQAPRRLTEEALTPGPTVIPLVTYDILNFKPGPQAQE--LFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLRV 597
P+FPRQFSA VE T+HLVD+++ YPPWR + + YD+ +A+ VV EGL+ GKTF+R YD+K EYM+R GEY C+R+YLGEAMP P +P +FQG ++G CEHW+ + GT++VHIYV+ + PRRLT+EA+ G +V PL+TYD+ G E + +P+ + AC +GG+ Y+HLFH YLR+
Sbjct: 35 PEFPRQFSATVETTAHLVDQSKDYPPWRGVIHLEYDYTRLRARAVVTEGLDKGKTFIRRYDNKTEYMIRSGEYPECQRAYLGEAMPLPGFPKGLNFQGMEAVEGTECEHWMHDVGTNRVHIYVEAHGARLPRRLTDEAVMEGESV-PLMTYDLRELHVGGSEVEDATYGIPEPF--HYRACTRQIGGFPYLHLFHWYLRI 231
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: A0A836CLG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG6_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.330e-55 Identity = 89/193 (46.11%), Postives = 126/193 (65.28%), Query Frame = 1
Query: 25 FSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQND-GTSQVHIYVDMTTQAPRRLTEE-ALTPGPTV-IPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
FSA + + VD A++YPP +M + YDH AG A V ++ G+ AGKT++R Y+ K++Y++ GGEY CRRSYLG+ MP P P A QG+V +DG + +HW Q D G S++H+Y+D T PRR+ EE A+ G + PL+TYD+ N GPQ F LP YT + C+L++GG+ Y+H FHH+LR
Sbjct: 7 FSATITTLARTVDHAQRYPPALGRMRIRYDHSAGLAVVAIEAGVEAGKTYIRQYNQKRDYLVIGGEYPLCRRSYLGDPMPMPALPTQAKLQGSVFIDGTMYQHWQQEDLGGSRIHLYIDSATSLPRRVVEEVAVRDGAALPAPLMTYDMSNVVLGPQDPASFELPAPYT--HDTCELYIGGFPYIHAFHHFLR 197
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: H3H268_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H268_PHYRM) HSP 1 Score: 179 bits (454), Expect = 1.560e-53 Identity = 92/197 (46.70%), Postives = 122/197 (61.93%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPG-PTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
PQ PRQF A V+V SHL D ++YPP +M V YD A+ + EG NAGKTF+R YD K+E+M++ GE+ C R+YLG+ MPTPE P F ++ G +CEHW+ +VH+Y D+ T P RLTEE L G PT+ L+T+D+LN GPQ F++P Y S C VGG+ Y+H FH+YLR
Sbjct: 24 PQLPRQFQAEVQVLSHLTDPRQEYPPSMGRMRVQYDFDQQLARAEMVEGYNAGKTFVRRYDEKQEFMVKSGEFRKCERAYLGDTMPTPEIPFAQEFVAMESVRGKVCEHWMHAHEDVRVHVYSDVATNVPIRLTEENLIDGQPTM--LLTFDLLNVHVGPQNVSSFSIPDGYEPSD--CVRSVGGFPYIHAFHYYLR 216
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: A0A225W5A4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5A4_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.960e-53 Identity = 91/199 (45.73%), Postives = 123/199 (61.81%), Query Frame = 1
Query: 1 VLPQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPG-PTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
V PQ PR F A V+V SHL D ++YPP +M V YD A+ V G NAGKTF+R YD K+E+M++ GE+ C R+YLG+AMP PE P T F ++ G +CEHW+ +VH+Y D+ T P RLTEE + PT+ L+TYD+LN + GPQ F +P Y S C+ +VGG+ Y+H FH+YL+
Sbjct: 18 VPPQLPRHFEAEVQVLSHLTDPRQEYPPSMGRMKVQYDFDQQLARAEVLAGYNAGKTFVRRYDQKQEFMVKSGEFRKCERAYLGDAMPVPEIPFTQEFVAIESVRGKICEHWVHTHENGRVHVYSDVATNVPIRLTEETVVDEQPTM--LLTYDLLNVRVGPQNISSFVIPDGYERSD--CERNVGGFPYIHAFHYYLK 212
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: G4YTX0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTX0_PHYSP) HSP 1 Score: 178 bits (452), Expect = 3.340e-53 Identity = 91/197 (46.19%), Postives = 123/197 (62.44%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPG-PTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
PQ PRQF A V+V SHL D + YPP +M V YD A+ + EG NAGKTF+R YD K+E+M++GGE+ C R+YLG+AMP PE P T F ++ G +CEHW+ ++VH+Y D+ T P RLTEE + G PT+ L+T+D+ + GPQ F +P Y S C +VGG+ Y+H FH+YLR
Sbjct: 26 PQLPRQFQAEVQVLSHLTDPRQDYPPSMGRMKVQYDFDQQLARAEMLEGYNAGKTFVRRYDQKQEFMVKGGEFRKCERAYLGDAMPAPEIPFTQEFVAMESVRGKVCEHWVHAHEDARVHVYSDVATNVPIRLTEENVIDGQPTM--LLTFDLFDVHVGPQNVSSFTIPDGYERSD--CVRNVGGFPYIHAFHYYLR 218
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: A0A6A4E3U2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E3U2_9STRA) HSP 1 Score: 175 bits (443), Expect = 7.650e-52 Identity = 89/196 (45.41%), Postives = 121/196 (61.73%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPGPTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
PQ PRQF A V+V SHL D + YPP +M V YD A + EG NAGKTF+R YD K+E+M++ GE+ C R+YLG+AMPTP P T F ++ G +CEHW+ + VH+Y D+ + P RLTEE++ G ++ L+T+D+LN GPQ F +P Y S C +VGG+ Y+H FH+YLR
Sbjct: 26 PQLPRQFQAEVQVLSHLTDPRQDYPPSVGRMKVQYDFDQQLALAEMLEGYNAGKTFVRRYDLKQEFMVKSGEFRKCERAYLGDAMPTPGIPFTQEFVAMESVRGKVCEHWVHAHEDAHVHVYSDVASNVPIRLTEESVIDGQPMM-LLTFDLLNVHVGPQNVSSFTIPDGYERSG--CVRNVGGFPYIHAFHYYLR 218
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: W2Q6Y1_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q6Y1_PHYPN) HSP 1 Score: 171 bits (434), Expect = 2.430e-50 Identity = 90/197 (45.69%), Postives = 118/197 (59.90%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPG-PTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
PQ P QF A V V SHL D ++YPP +M V YD A+ + EG NAGKTFLR YD K+E+M++ GE+ C R+YLG+AMP PE P F ++ G +CEHW+ +VH+Y D++T P RLTEE + G PT+ L T+D N GPQ F +P Y S C +VGG+ Y+H FH+YLR
Sbjct: 37 PQLPHQFQAEVHVLSHLTDPRQEYPPSMGRMKVQYDFDQQLARAEMLEGYNAGKTFLRRYDQKQEFMVKSGEFRKCERAYLGDAMPVPEIPFAQEFVAMESVRGKVCEHWVHAHDNVRVHVYSDVSTNVPIRLTEENVIDGQPTM--LQTFDFHNVHIGPQNVSSFAIPDGYERSD--CARNVGGFPYIHAFHYYLR 229
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: D0N837_PHYIT (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=D0N837_PHYIT) HSP 1 Score: 171 bits (432), Expect = 2.940e-50 Identity = 91/197 (46.19%), Postives = 120/197 (60.91%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHIYVDMTTQAPRRLTEEALTPG-PTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
PQ P QF A V V SHL D ++YPP +M V YD A+ + EG NAGKTF+R YD K+E+M++ GE+ C R+YLG+AMP PE P T F V++ G +CEHW+ +VH+Y D+ T P RLTEE + G PT+ L T+D+ N GPQ F +P Y S C +VGG+ Y+H FH+YLR
Sbjct: 23 PQLPHQFQAEVLVLSHLTDPRQEYPPSMGRMKVQYDFDQQLARAEMLEGYNAGKTFVRRYDQKQEFMVKSGEFRKCERAYLGDAMPVPEIPFTQEF---VSVRGKVCEHWVHTHDNVRVHVYSDVATNVPIRLTEENVINGQPTM--LQTFDLQNVHVGPQNASSFAIPDGYERSD--CVRNVGGFPYIHAFHYYLR 212
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Match: A0A067CFD2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFD2_SAPPC) HSP 1 Score: 166 bits (420), Expect = 2.210e-48 Identity = 82/198 (41.41%), Postives = 118/198 (59.60%), Query Frame = 1
Query: 7 PQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEGLNAGKTFLRMYDSKKEYMLRGGEYASCRRSYLGEAMPTPEYPATASFQGTVTLDGLLCEHWLQNDGTSQVHI--YVDMTTQAPRRLTEEALTPGPTVIPLVTYDILNFKPGPQAQELFNLPQIYTTSSEACDLHVGGYSYVHLFHHYLR 594
P P QF A +E+TSHLVDR++ YPPW R++ V YD A+ + G + GKT++R YD+KKEY+++ GEY C R+YLGE MP P P+ QGT T+DG+ C W+ D + V + Y + + P RL +E+ G L+TYD+L+ PQ +F +P Y S +C V G+ Y+H+F HY+R
Sbjct: 22 PTMPLQFDANIEITSHLVDRSKDYPPWLRRLKVRYDFDQKVARADILAGYDKGKTYIRRYDTKKEYIVKYGEYKKCERAYLGEDMPLPRVPSDLILQGTSTIDGVDCRLWVSEDSDANVRVSVYERSSDRVPIRLMQESQLDGDAWTTLITYDMLDVTVRPQDLSVFEIPGGY--SHRSCSRSVSGFPYIHIFDHYVR 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11571.1244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11571.1244.1 >prot_H-elongata_contig11571.1244.1 ID=prot_H-elongata_contig11571.1244.1|Name=mRNA_H-elongata_contig11571.1244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp VLPQFPRQFSAIVEVTSHLVDRARKYPPWRRKMGVWYDHVAGQAKVVVDEback to top mRNA from alignment at H-elongata_contig11571:6609..8131+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11571.1244.1 ID=mRNA_H-elongata_contig11571.1244.1|Name=mRNA_H-elongata_contig11571.1244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1523bp|location=Sequence derived from alignment at H-elongata_contig11571:6609..8131+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11571:6609..8131+ >mRNA_H-elongata_contig11571.1244.1 ID=mRNA_H-elongata_contig11571.1244.1|Name=mRNA_H-elongata_contig11571.1244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig11571:6609..8131+ (Himanthalia elongata Himel1 dioecious)back to top |