mRNA_H-elongata_contig115698.1242.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115698.1242.1
Unique NamemRNA_H-elongata_contig115698.1242.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.810e-22
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   10 RAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKK 201
            RAEELEV+ TGTSELDF ELAKAT+YDGG+  DH T+ AFW AV  M  EE++RLLMFVTGSKK
Sbjct: 1590 RAEELEVLVTGTSELDFEELAKATEYDGGYGEDHRTIRAFWRAVGEMPAEEQRRLLMFVTGSKK 1653          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.200e-21
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   10 RAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKK 201
            RAEELEV+ TGTSELDF ELAKAT+YDGG++ DH T+ AFW AV  M  EE++RLLMFVTGSKK
Sbjct: 1085 RAEELEVLVTGTSELDFEELAKATEYDGGYDEDHRTILAFWRAVGRMPAEEQRRLLMFVTGSKK 1148          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: D7FSE3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.390e-20
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   13 AEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSK 198
            AEELEV+ TGTSELDF +LAK T+YDGG+  DH T+ AFW AV  M  EE++ LLMFVTGSK
Sbjct:   51 AEELEVLVTGTSELDFDKLAKTTEYDGGYGKDHCTILAFWRAVGRMPAEEQRHLLMFVTGSK 112          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: A0A5J4WD19_9EUKA (Putative Ubiquitin-protein ligase E3A n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WD19_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 6.960e-15
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   16 EELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTG 192
            EELE++  GT+ELDF EL K  QYDGGFN  HPT+  FW+ V     +EK+RLL FVT 
Sbjct:  676 EELELLIVGTNELDFNELKKVAQYDGGFNASHPTILQFWETVSEFNEDEKRRLLHFVTS 734          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: A0A1Y2F9I0_9FUNG (HECT-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2F9I0_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 3.850e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 VARAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKKV 204
            + RAEELE++ +G+ ELD+ EL KAT+YD G++ DH  +  FW+ V  M  ++KK+LLMFVT S +V
Sbjct:  160 MCRAEELELLISGSVELDYEELEKATEYDDGYSKDHIVIKNFWEIVHAMTYDQKKKLLMFVTASDRV 226          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: A0A1Y1VBT8_9FUNG (HECT-domain-containing protein n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VBT8_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 8.470e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 VARAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKKV 204
            + RAEELE++ +G+ ELD+ EL KAT+YD G++ DH  +  FW+ V  M  ++KK+LLMFVT S +V
Sbjct:  820 MCRAEELELLISGSVELDYEELEKATEYDDGYSKDHIVIKNFWEIVHAMTYDQKKKLLMFVTASDRV 886          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: A0A2T7PLQ0_POMCA (HECT domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PLQ0_POMCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.580e-13
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 MVARAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKKV 204
            M+ R +E+E++  G+ E DF  L  AT YDGGF  D PTV  FWD V     E+KK+LL F TGS +V
Sbjct:  728 MLFRPDEVEMLVCGSKEFDFHALETATDYDGGFTADSPTVRNFWDIVHEFSEEDKKKLLQFTTGSDRV 795          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: UPI0003F0E64C (ubiquitin-protein ligase E3A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0E64C)

HSP 1 Score: 73.2 bits (178), Expect = 1.590e-13
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   16 EELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKKV 204
            EE+E++  G+  LDF  L +AT+YDGGF  D P +  FW+ V + + E+KKRLLMF TGS +V
Sbjct: 1020 EEIELLVCGSKHLDFNALEEATEYDGGFTRDSPIIRNFWEIVHNFDEEDKKRLLMFTTGSDRV 1082          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: A0A7M7NGF1_STRPU (HECT domain-containing protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NGF1_STRPU)

HSP 1 Score: 72.0 bits (175), Expect = 4.030e-13
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   10 RAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKKV 204
            R +E+E++  G+   DF EL KAT+YDGG+    PT+  FW+ V  M+ ++K++LLMF TGS +V
Sbjct:  782 RPDEVELLVCGSKNFDFNELEKATEYDGGYTSTSPTIRYFWEIVHSMDEDQKRKLLMFTTGSDRV 846          
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Match: D2VA31_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VA31_NAEGR)

HSP 1 Score: 71.2 bits (173), Expect = 5.320e-13
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   10 RAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHMEPEEKKRLLMFVTGSKKV 204
            RAEELE++  G+  LDF  L + T+Y  G++ DHP +  FWD V H   E+KK+ LMF TGS +V
Sbjct:  206 RAEELELLICGSPVLDFEALERTTKYADGYDKDHPLIKDFWDIVHHFSEEDKKKFLMFCTGSDRV 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115698.1242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2Y9_9PHAE8.810e-2273.44HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWC7_ECTSI1.200e-2173.44HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FSE3_ECTSI2.390e-2067.74HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5J4WD19_9EUKA6.960e-1557.63Putative Ubiquitin-protein ligase E3A n=1 Tax=Stre... [more]
A0A1Y2F9I0_9FUNG3.850e-1450.75HECT-domain-containing protein n=1 Tax=Neocallimas... [more]
A0A1Y1VBT8_9FUNG8.470e-1450.75HECT-domain-containing protein n=3 Tax=Neocallimas... [more]
A0A2T7PLQ0_POMCA1.580e-1350.00HECT domain-containing protein n=2 Tax=Pomacea can... [more]
UPI0003F0E64C1.590e-1350.79ubiquitin-protein ligase E3A-like n=1 Tax=Saccoglo... [more]
A0A7M7NGF1_STRPU4.030e-1346.15HECT domain-containing protein n=2 Tax=Echinacea T... [more]
D2VA31_NAEGR5.320e-1349.23Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115698contigH-elongata_contig115698:1737..1940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog2880.D7FWC7
KEGG koko:K10587,ko:K10615
KEGG Pathwayko04120,ko05165,ko05203,map04120,map05165,map05203
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHECT
Ec32 orthologEc-25_000920.1
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.1103384-CDS-H-elongata_contig115698:1736..19401622929671.1103384-CDS-H-elongata_contig115698:1736..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115698 1737..1940 -
1691679113.6378233-CDS-H-elongata_contig115698:1736..19401691679113.6378233-CDS-H-elongata_contig115698:1736..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115698 1737..1940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115698.1242.1prot_H-elongata_contig115698.1242.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115698 1737..1940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115698.1242.1

>prot_H-elongata_contig115698.1242.1 ID=prot_H-elongata_contig115698.1242.1|Name=mRNA_H-elongata_contig115698.1242.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVARAEELEVMATGTSELDFGELAKATQYDGGFNPDHPTVGAFWDAVEHM
EPEEKKRLLMFVTGSKKV
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mRNA from alignment at H-elongata_contig115698:1737..1940-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115698.1242.1 ID=mRNA_H-elongata_contig115698.1242.1|Name=mRNA_H-elongata_contig115698.1242.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig115698:1737..1940- (Himanthalia elongata Himel1 dioecious)
ATGGTGGCCAGGGCTGAAGAGCTCGAGGTCATGGCCACGGGGACGTCGGA GTTGGACTTCGGCGAGCTGGCGAAGGCAACGCAGTACGACGGGGGGTTCA ACCCAGACCATCCCACGGTGGGGGCGTTTTGGGATGCGGTTGAGCACATG GAGCCGGAGGAGAAGAAACGCCTCCTTATGTTCGTGACGGGGTCAAAGAA GGTC
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Coding sequence (CDS) from alignment at H-elongata_contig115698:1737..1940-

>mRNA_H-elongata_contig115698.1242.1 ID=mRNA_H-elongata_contig115698.1242.1|Name=mRNA_H-elongata_contig115698.1242.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig115698:1737..1940- (Himanthalia elongata Himel1 dioecious)
ATGGTGGCCAGGGCTGAAGAGCTCGAGGTCATGGCCACGGGGACGTCGGA
GTTGGACTTCGGCGAGCTGGCGAAGGCAACGCAGTACGACGGGGGGTTCA
ACCCAGACCATCCCACGGTGGGGGCGTTTTGGGATGCGGTTGAGCACATG
GAGCCGGAGGAGAAGAAACGCCTCCTTATGTTCGTGACGGGGTCAAAGAA
GGTCATGGTGGCCAGGGCTGAAGAGCTCGAGGTCATGGCCACGGGGACGT
CGGAGTTGGACTTCGGCGAGCTGGCGAAGGCAACGCAGTACGACGGGGGG
TTCAACCCAGACCATCCCACGGTGGGGGCGTTTTGGGATGCGGTTGAGCA
CATGGAGCCGGAGGAGAAGAAACGCCTCCTTATGTTCGTGACGGGGTCAA
AGAAGGTC
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