mRNA_H-elongata_contig115609.1233.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 186 bits (471), Expect = 2.610e-50 Identity = 102/234 (43.59%), Postives = 144/234 (61.54%), Query Frame = 1
Query: 1 ISSMVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIEKKPLGVE------GISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
I M+PY +N YAREPP+LL+ D G+ V SA GVQQGC LGPLCYSAG LK+L++FRANPP+ G + ++FIDD+ V+ P + AA E ++ G++LNR K + L G + E+ R ++ T L V GMR+VGVPVG + + GEPT+L++ + + DAQAS QILR S +RL+ LL ++PP + +AA+ +D VE L +I+ G
Sbjct: 1316 IPPMLPYATNIYAREPPKLLYKTDS-GMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNG 1548
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 4.820e-47 Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 1
Query: 10 MVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+V Y N YAR +LLF ++ +EV S RGVQQGC LG + G L I+KEF PP+PGV+ + ++DD+ PP L +M AI ++ L +GI L+ K + L G+ LT +++ + GL+V GM VVG+PVGTE+FQR+ V K G+P EL+ L + D QAS+Q+LRLS RL HLL T+ PSI AA +D ++ WA++ I+ G
Sbjct: 283 LVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 513
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 176 bits (445), Expect = 7.320e-47 Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 1
Query: 10 MVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+V Y N YAR +LLF ++ +EV S RGVQQGC LG + G L I+KEF PP+PGV+ + ++DD+ PP L +M AI ++ L +GI L+ K + L G+ LT +++ + GL+V GM VVG+PVGTE+FQR+ V K G+P EL+ L + D QAS+Q+LRLS RL HLL T+ PSI AA +D ++ WA++ I+ G
Sbjct: 283 LVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 513
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 7.520e-47 Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 1
Query: 10 MVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+V Y N YAR +LLF ++ +EV S RGVQQGC LG + G L I+KEF PP+PGV+ + ++DD+ PP L +M AI ++ L +GI L+ K + L G+ LT +++ + GL+V GM VVG+PVGTE+FQR+ V K G+P EL+ L + D QAS+Q+LRLS RL HLL T+ PSI AA +D ++ WA++ I+ G
Sbjct: 131 LVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 361
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.440e-45 Identity = 98/231 (42.42%), Postives = 134/231 (58.01%), Query Frame = 1
Query: 10 MVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+V Y N YAR +LLF ++ +EV S RGVQQGC LG + G L I+KEF PP+PG + + ++DD+ V PP L ++ AI + L +GI L+ K + L G+ LT +++ + TGL+V GM +VGVPVGTE FQR V G P EL+R L + D QAS+Q+LRLS RL HLL T+ PSI AA +D L+ WA++ I+ G
Sbjct: 283 LVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLG 513
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.010e-43 Identity = 94/231 (40.69%), Postives = 131/231 (56.71%), Query Frame = 1
Query: 10 MVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+ Y N YAR +LLF ++ +EV S RGVQQGC LG + G L I+KEF PP+PG + + ++DD+ V PP L ++ AI + L +GI L+ K L G+ LT +++ + TGL+V GM +VGVPVGTE FQR V G P EL+ L + D Q S+Q+LR+S RL HLL T+ PSI AA +D+L+ WA++ I+ G
Sbjct: 131 LAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLG 361
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE) HSP 1 Score: 153 bits (386), Expect = 4.700e-42 Identity = 88/212 (41.51%), Postives = 122/212 (57.55%), Query Frame = 1
Query: 67 LDGRGLEVAESARGVQQGCPLGPLCYSAGSLKILKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
++ +E+ S RGVQQGC LG +S G L +KEF PP+PG + + ++DD+ V PP L ++ AI + L +GI L+ K + L G LT +++ + TGL+V GM +VGVPVGTE FQR V G P EL+R L + D QAS+Q+LRLS RL HLL T+ PSI AA +D L+ WA++ I+ G
Sbjct: 1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLG 212
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.660e-33 Identity = 72/179 (40.22%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 166 LKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+KEF PP+PGV+ + ++DD+ PP L +M AI ++ L +GI L+ K + L G+ LT +++ + GL+V GM VVG+P GTE+FQR+ V K G+P EL+ L + D QAS+Q+LRLS RL HLL T+ PSI AA +D ++ WA++ I+ G
Sbjct: 1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 179
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE) HSP 1 Score: 130 bits (326), Expect = 6.010e-31 Identity = 72/179 (40.22%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 166 LKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIE------KKPLGVEGISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+KEF PP+PGV+ + ++DD+ PP L +M AI ++ L +GI L+ K + L G+ LT +++ + GL+V GM VVG+PVGTE+FQR+ V K G+P EL+ L + D QAS+Q+LRLS RL LL T+ PSI AA +D ++ WA++ I+ G
Sbjct: 1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 179
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE) HSP 1 Score: 122 bits (307), Expect = 4.940e-30 Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 1
Query: 166 LKEFRANPPMPGVRPVSFIDDITVIPPPELFLDMAAIEKKPLGVEG------ISLNRRKLQALLAYGVGPEQLTEEKRVAMDITGLTVVRQGMRVVGVPVGTEQFQRDLVQKAVNGEPTELVRALVPMKDAQASFQILRLSVTSRLSHLLLTVPPSIMCQAAANYDALVEWALASIIAG 684
+KEF PP+PG + + ++DD+ V PP L ++ AI ++ I L+ K + L G+ LT +++ + TGL+V GM +VGVPVGTE FQR V G P EL+R L + D QAS+Q+LRLS RL HLL T PSI AA +D L+ WA++ I+ G
Sbjct: 1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLG 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115609.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115609.1233.1 >prot_H-elongata_contig115609.1233.1 ID=prot_H-elongata_contig115609.1233.1|Name=mRNA_H-elongata_contig115609.1233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp MVPYTSNFYAREPPELLFALDGRGLEVAESARGVQQGCPLGPLCYSAGSLback to top mRNA from alignment at H-elongata_contig115609:265..972+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115609.1233.1 ID=mRNA_H-elongata_contig115609.1233.1|Name=mRNA_H-elongata_contig115609.1233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig115609:265..972+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115609:265..972+ >mRNA_H-elongata_contig115609.1233.1 ID=mRNA_H-elongata_contig115609.1233.1|Name=mRNA_H-elongata_contig115609.1233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig115609:265..972+ (Himanthalia elongata Himel1 dioecious)back to top |