mRNA_H-elongata_contig115599.1232.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115599.1232.1
Unique NamemRNA_H-elongata_contig115599.1232.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115599.1232.1 vs. uniprot
Match: A0A6H5L7F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.820e-28
Identity = 91/216 (42.13%), Postives = 107/216 (49.54%), Query Frame = -2 
Query:    3 CGELSKAKRVLLAMEGYPGGSIAQTLTYNTIIKGLGRELLLDEAFEVARSMVERGCSPNEAREFGAGKDDVGVGTGEDEMSVVSQESVDDVDGLLSLLSESDRQDAVGSARSAPNSAPVGRLASVSEATDKVGADVEGDASSPPSGSIGSDADGFSEAGVSSDNVRNGVAATSAAAGRGTKGRRGTLVRPSVEAFTSVLTGFAGIGDKDRALAVFQ 650
            CGELSKA+ VL +ME  PGGSIAQTL+YNT+IKGLGRELL+DEAF VAR M+++GCSP+E                               + L+ +   S   D   +    P                            PP    G DA G + A   +     GV  TS    R   G    LVRPSVEAFTSVLTGFAG+GDKDRALAVFQ
Sbjct:  631 CGELSKARSVLRSMEESPGGSIAQTLSYNTLIKGLGRELLVDEAFGVARGMLDKGCSPDEVT----------------------------TNSLVDICVRSGNLDRAYNLLKNP-------------------------LLFPPPPQPGLDA-GSATAAAEAGTDAGGVEGTSPGGERKEAG----LVRPSVEAFTSVLTGFAGVGDKDRALAVFQ 788
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BLAST of mRNA_H-elongata_contig115599.1232.1 vs. uniprot
Match: D8LBV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.540e-27
Identity = 91/216 (42.13%), Postives = 108/216 (50.00%), Query Frame = -2 
Query:    3 CGELSKAKRVLLAMEGYPGGSIAQTLTYNTIIKGLGRELLLDEAFEVARSMVERGCSPNEAREFGAGKDDVGVGTGEDEMSVVSQESVDDVDGLLSLLSESDRQDAVGSARSAPNSAPVGRLASVSEATDKVGADVEGDASSPPSGSIGSDADGFSEAGVSSDNVRNGVAATSAAAGRGTKGRRGTLVRPSVEAFTSVLTGFAGIGDKDRALAVFQ 650
            C ELSKA+ VL  ME  PGGSIAQTL+YNT+IKGLGRELL+DEAF VAR M+++GC P+E                               + L+ +   S   D   +    P   P+           + G D  G A        G+DA G             GV  TS     G  G+   LVRPSVEAFTSVLTGFAG+GDKDRALAVFQ
Sbjct:  168 CAELSKARTVLRRMEESPGGSIAQTLSYNTLIKGLGRELLVDEAFGVARGMLDKGCLPDEVT----------------------------TNSLVDICVRSGNLDRAYNLLKNPTLFPL-------PPPPQPGCDA-GSAXXXXXXXXGADAGG-------------GVEGTSP----GGAGKETGLVRPSVEAFTSVLTGFAGVGDKDRALAVFQ 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115599.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7F1_9PHAE6.820e-2842.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV9_ECTSI5.540e-2742.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115599contigH-elongata_contig115599:470..2050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size654
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.006179-CDS-H-elongata_contig115599:469..9331622929670.006179-CDS-H-elongata_contig115599:469..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115599 470..933 +
1691679113.283124-CDS-H-elongata_contig115599:469..9331691679113.283124-CDS-H-elongata_contig115599:469..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115599 470..933 +
1622929670.024944-CDS-H-elongata_contig115599:1861..20481622929670.024944-CDS-H-elongata_contig115599:1861..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115599 1862..2048 +
1691679113.2915802-CDS-H-elongata_contig115599:1861..20481691679113.2915802-CDS-H-elongata_contig115599:1861..2048Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115599 1862..2048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115599.1232.1prot_H-elongata_contig115599.1232.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115599 470..2048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115599.1232.1

>prot_H-elongata_contig115599.1232.1 ID=prot_H-elongata_contig115599.1232.1|Name=mRNA_H-elongata_contig115599.1232.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
CWKTASARSLSPIPANPVSTDVNASTDGRTSVPRRPFVPLPAAADVAATP
LRTLSELTPASENPSASEPIEPEGGELASPSTSAPTLSVASETDASRPTG
AEFGAERALPTASWRSDSDSSDNRPSTSSTDSWLTTLISSSPVPTPTSSF
PAPNSRASFGEHPLSTMLRATSNASSRRSSLPRPLIIVLYVSVWAIEPPG
YPSMARRTRFAFDSSPH
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mRNA from alignment at H-elongata_contig115599:470..2050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115599.1232.1 ID=mRNA_H-elongata_contig115599.1232.1|Name=mRNA_H-elongata_contig115599.1232.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1581bp|location=Sequence derived from alignment at H-elongata_contig115599:470..2050+ (Himanthalia elongata Himel1 dioecious)
TGCTGGAAGACGGCGAGCGCGCGGTCTTTGTCTCCGATCCCGGCGAACCC
CGTCAGCACCGATGTGAACGCCTCCACCGACGGTCGGACCAGCGTGCCTC
GCCGTCCCTTCGTCCCTCTCCCCGCTGCCGCTGACGTCGCTGCCACCCCG
TTGCGGACATTGTCAGAGCTTACTCCTGCCTCCGAAAATCCATCAGCGTC
GGAACCGATCGAGCCCGAAGGCGGCGAGCTCGCGTCGCCCTCGACGTCCG
CGCCAACTTTGTCCGTAGCTTCTGAAACTGACGCCAGCCGCCCAACTGGA
GCTGAATTTGGAGCTGAACGCGCACTCCCCACGGCGTCCTGGCGATCTGA
CTCCGATAGCAGCGACAACAGGCCGTCCACGTCATCGACCGATTCCTGGC
TAACGACACTCATCTCGTCCTCACCCGTGCCCACACCTACATCGTCCTTT
CCCGCCCCGAATTCGTCCGCGACGCCTTCTGTCCCTGAACCTGTGGCCCC
TCCGTCTGCCCCAGCCTTCGCCGCCTCGGGCACCGCTGAAGGCTTGTTCG
ACAGTGCCAAGGGTGACTCTCCTGGTGTGGCAGGAACGGGAGCCATGTCG
GGATTTTTGAGGAGGTCGTACGCGCGGTCAACATCTCCGCTTCGGACGCA
GATGTTCACTAAGGAGTTCGTCGTGACCTGGAAGGGGAGGGGGGGAGAGA
GGAGAAGGAAGGGGGCAAGAAAGAGACTTTACGGTAAGGGATAATTGGAA
CGGATAATTATATCGCACCCGTCGCAATCGTCACGATACAAGACACTCTT
CCAAACATCCATACACAAACACGCACTAGGAGGATCGATGCGAGTACCCT
AATAATTGACTAGCATGACACGGCCGGATTGCGCGGTTATGAGCAATTTT
ATAAACACACACACACACAAGCGAGAGGCCGGATCGGGGAGGGGATAGGA
TGGTCGAAGAAGCGCAAGACAGTGGTGTGGATGTTCGTAGGGTTGGAATG
AATTCAAGTTTTTTTTAATAAAAAGGGGGAGATTCGGGTGGAAATAGAAA
AAAGAAAAAGAAAAAAAAATAGACGGGAGAGCGTTGGTCCAATAGGGCGG
GCGACCAAAGCTATATGGCGAACAAGGAAGGAAGTAGAAAAGGAAGCGGA
AAGTATTGACGGTTTAGATACGAAATGTAGATATACTAGTAGTATATTTC
CTTTTGTCACGTCTAATCAGAGGTTTTAGTAGGAAATAAATATTATTGAA
TTCCCCATTGCGAGGATCAGTGCGAGAGTAGCCTAGAAGAGCTAGCATGA
CAGAGCCGGATTGCGCAGTTATGTGCAATTTAGTAAATACACACACACAC
AGAACAGCGCATTTAGAAAAAGCAAGCACATAAAAAAAACAGGCGTGCCT
CGTTCGGGGAGCATCCTCTCTCTACCATGCTGCGAGCGACCTCGAACGCC
TCGTCCAGAAGAAGCTCCCTCCCGAGGCCCTTGATTATAGTGTTGTACGT
GAGCGTCTGGGCAATCGAACCGCCGGGATACCCCTCCATGGCTAGGAGAA
CCCGTTTCGCCTTCGACAGCTCGCCGCATCT
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Coding sequence (CDS) from alignment at H-elongata_contig115599:470..2050+

>mRNA_H-elongata_contig115599.1232.1 ID=mRNA_H-elongata_contig115599.1232.1|Name=mRNA_H-elongata_contig115599.1232.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig115599:470..2050+ (Himanthalia elongata Himel1 dioecious)
TGCTGGAAGACGGCGAGCGCGCGGTCTTTGTCTCCGATCCCGGCGAACCC
CGTCAGCACCGATGTGAACGCCTCCACCGACGGTCGGACCAGCGTGCCTC
GCCGTCCCTTCGTCCCTCTCCCCGCTGCCGCTGACGTCGCTGCCACCCCG
TTGCGGACATTGTCAGAGCTTACTCCTGCCTCCGAAAATCCATCAGCGTC
GGAACCGATCGAGCCCGAAGGCGGCGAGCTCGCGTCGCCCTCGACGTCCG
CGCCAACTTTGTCCGTAGCTTCTGAAACTGACGCCAGCCGCCCAACTGGA
GCTGAATTTGGAGCTGAACGCGCACTCCCCACGGCGTCCTGGCGATCTGA
CTCCGATAGCAGCGACAACAGGCCGTCCACGTCATCGACCGATTCCTGGC
TAACGACACTCATCTCGTCCTCACCCGTGCCCACACCTACATCGTCCTTT
CCCGCCCCGAATTCTGCTGGAAGACGGCGAGCGCGCGGTCTTTGTCTCCG
ATCCCGGCGAACCCCGTCAGCACCGATGTGAACGCCTCCACCGACGGTCG
GACCAGCGTGCCTCGCCGTCCCTTCGTCCCTCTCCCCGCTGCCGCTGACG
TCGCTGCCACCCCGTTGCGGACATTGTCAGAGCTTACTCCTGCCTCCGAA
AATCCATCAGCGTCGGAACCGATCGAGCCCGAAGGCGGCGAGCTCGCGTC
GCCCTCGACGTCCGCGCCAACTTTGTCCGTAGCTTCTGAAACTGACGCCA
GCCGCCCAACTGGAGCTGAATTTGGAGCTGAACGCGCACTCCCCACGGCG
TCCTGGCGATCTGACTCCGATAGCAGCGACAACAGGCCGTCCACGTCATC
GACCGATTCCTGGCTAACGACACTCATCTCGTCCTCACCCGTGCCCACAC
CTACATCGTCCTTTCCCGCCCCGAATTCGCGTGCCTCGTTCGGGGAGCAT
CCTCTCTCTACCATGCTGCGAGCGACCTCGAACGCCTCGTCCAGAAGAAG
CTCCCTCCCGAGGCCCTTGATTATAGTGTTGTACGTGAGCGTCTGGGCAA
TCGAACCGCCGGGATACCCCTCCATGGCTAGGAGAACCCGTTTCGCCTTC
GACAGCTCGCCGCATGCGTGCCTCGTTCGGGGAGCATCCTCTCTCTACCA
TGCTGCGAGCGACCTCGAACGCCTCGTCCAGAAGAAGCTCCCTCCCGAGG
CCCTTGATTATAGTGTTGTACGTGAGCGTCTGGGCAATCGAACCGCCGGG
ATACCCCTCCATGGCTAGGAGAACCCGTTTCGCCTTCGACAGCTCGCCGC
AT
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