mRNA_H-elongata_contig115491.1226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115491.1226.1
Unique NamemRNA_H-elongata_contig115491.1226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: D8LCC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC8_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 7.870e-71
Identity = 115/166 (69.28%), Postives = 136/166 (81.93%), Query Frame = 1
Query:    1 AYANLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRP--LESLSTLAEGE--GEESAAHLIPHRVGTDHPIPFTKGQEEADNTRADGSRVPP 486
            A  +L+EGNPFFSGDS+TAHHGKES+ Q+KFR F+E F AL+AGE LPFT++V DPLGNSFIGS++HENPADDP +TVE FER+F+ENEELGLNDMNTD +E+LPEGYVRP   +  S+ A G+  G E A HLIPHRVGTDHP  FTKGQEEAD+T  DG+   P
Sbjct:  413 ARTSLVEGNPFFSGDSATAHHGKESDVQRKFRIFLERFGALIAGESLPFTLVVRDPLGNSFIGSSEHENPADDPQMTVEWFERTFEENEELGLNDMNTDDFETLPEGYVRPPVAQPGSSGAPGQEGGGEGATHLIPHRVGTDHPTAFTKGQEEADDTVTDGAFASP 578          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A6H5K257_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K257_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 9.900e-51
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  112 FRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNIT---------VERFERSFQENEELGLNDMNTDGYESLPEGYVRP-----LESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEADNTRADGSRVPP 486
            F AL+AGE LPFT++V DPLGNSFIGS++HENPADDP +T         VE FER+FQENEELGLND+NTD +E+LPEGYVRP     + S +   EG G  SAAHLIPHRVGTDHP  FTKGQEEAD+T  DG+   P
Sbjct:   22 FGALIAGESLPFTLVVRDPLGNSFIGSSEHENPADDPKMTALNFDLGGVVEWFERTFQENEELGLNDINTDDFETLPEGYVRPPVAQPVSSGAPEQEG-GGGSAAHLIPHRVGTDHPTAFTKGQEEADDTVTDGTFASP 159          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S4DIZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIZ4_HETAK)

HSP 1 Score: 112 bits (279), Expect = 3.830e-26
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 1
Query:   10 NLLEGNPFFSGDSSTAHH----GKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLI-PHRVGTDHPIPFTKGQEEA 450
            NL EGNPF +GDS+T HH    G  +  + +F AFM   + ++  +VLPFT+ + DPLGNSFIGS   EN  +DP I  E +ERS +ENE+LGLNDM T+GYE   EG    +E+  T A  +       ++  H+ G DHP  F KG  +A
Sbjct:  199 NLEEGNPFAAGDSATKHHAPADGPGAATRDRFLAFMGRLQDVIDKKVLPFTLELVDPLGNSFIGSR-LENFLEDPQIHSEDYERSHEENEDLGLNDMKTEGYE---EGEPGAVETTGTEAPKKEPILPDRVVMAHKRGPDHPHQFAKGCNDA 346          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A4D9D461_9STRA (Zpr1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D461_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.290e-23
Identity = 66/163 (40.49%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   10 NLLEGNPFFSGDSSTAHHGKESEA-------------QKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEADNT 459
            +L EGNPF  GDS+  HH  E E              Q++FR FM     LV G   PFT+ + DPLGNSFI S   ++PA D  +T E + RS+ E+E+LGL+DM T+G+E+  EG        STL             PH  G DHPI FT+G ++   T
Sbjct:  220 HLQEGNPFGMGDSAVKHHLGEEEGKEGGGGKAEGKTLQERFRVFMRRLDDLVEGRSFPFTLELRDPLGNSFI-SFQGDSPAADTRLTTESYTRSWDEDEQLGLHDMATEGFETGYEGQGGKESLRSTL----------QTHPHVHGGDHPIHFTRGCDDGART 371          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S2XY77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY77_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.050e-21
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   10 NLLEGNPFFSGDSSTAHH---GKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHE---NPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKG 438
            NLLEGNPF  GDS+  HH   G +  A+ +   F++    +  G+VLPFT+ V DPL NSFIG    +   N  DDP I VE +ERSFQENE+LGL+D+NT+ Y              S+  E E E+    + P  V  DHP  FTKG
Sbjct:  361 NLLEGNPFTRGDSAVQHHDTSGNQQRARGEMDRFLQKLEDVKNGKVLPFTLEVKDPLANSFIGPRRDDTRGNIRDDPLIQVEEYERSFQENEDLGLHDINTENYAVG-----------SSQVEVEVEQPV--VGPTEVA-DHPHHFTKG 495          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A836CEY4_9STRA (ZPR1 zinc-finger domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.050e-19
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   10 NLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDP 222
            NL EGNPF+SGDS+T HHG E   Q KFR F+E   AL  G+  PFT+++ DPLGNSFIG+  +++PADDP
Sbjct:  364 NLCEGNPFYSGDSATHHHGSEGATQVKFRVFLEKLDALRDGQHFPFTLVLRDPLGNSFIGALGYDDPADDP 434          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S4A1G6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1G6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.260e-18
Identity = 68/162 (41.98%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   13 LLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIG-----------STDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPE-GYVRPLESLSTLAEGEGEES--AAHLIPH-RVGTDHPIP-FTKGQEEA 450
            LL GNPF  GDS+      E+E ++KF AF++  RAL  G+V PFT+I+ DPL NSFIG           S   E P D PN+TVE ++R+F E+EELGLND+N    +++ E G    L ++  L  G       A H+ P  R   DHP P F +G ++A
Sbjct:  355 LLRGNPF--GDSA------ETENRRKFEAFLDRVRALRDGKVFPFTVIMQDPLANSFIGPRRDAASFSPISEAGEAPPD-PNLTVEDYDRTFDEDEELGLNDINDGTLDAVAEEGSDDDLPAVDGLEVGPKRVVGVADHVRPAPRTTVDHPNPEFARGCDDA 507          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S2DCU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCU7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.180e-17
Identity = 56/158 (35.44%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   13 LLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGYESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEADNTRADGSRVPP 486
            +    PF++GDS     GK+   + K+ AF +    +  G+ +PFT+ + DPL +SFIGS D   P  DP +TV  + RS+ E+EE G+NDMN    E    G    + S S +A+     +  H+   R G DHP  + KG +       DG RV P
Sbjct:   86 MTHSQPFYAGDS-----GKDDTLRSKWTAFTDKLSEIADGQGMPFTLTLRDPLASSFIGSLDGLPPDQDPQVTVTDYTRSWDEDEEYGINDMNAS--EGGGGGAEITIPSDSGVAQANPNLAMTHV---RSGEDHPREYAKGCD-------DGVRVVP 226          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: A0A7S2S3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3B9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.750e-15
Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 1
Query:    4 YANLLEGNPFFSGDSSTAHH----GKESE----AQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHE----NPADD------------PNITVERFERSFQENEELGLNDMNTDGY-ESLPEGYVRPLESLSTLAEGEGEESAAHLI--PHRVGTDHPIPFTKGQEEADNT 459
            Y  L   NPF  GD++T  H    G+E        K +  F++    +  G+  P+TMI+ DPL NSFIG   H     + ADD            P I +E +ERSF++NE LGLND+NT+ Y E+  E  V          + +G +   H +    R G DHP    KG  + D T
Sbjct:   34 YDRLKCVNPFPHGDAATKQHRTNDGEEFSDPCPRTKNYLQFLQTLDDMKNGKKFPYTMIISDPLSNSFIGPVPHHAVQISSADDDNHNCSLQNYVDPRIKMEPYERSFEQNEILGLNDINTENYREATKEHKVN--------CDFDGSDLPNHFVRLDTRRGPDHPHDVAKGTLDGDET 204          
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Match: F2E5X6_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E5X6_HORVV)

HSP 1 Score: 81.6 bits (200), Expect = 5.340e-15
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   10 NLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFTMIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDGY 303
            +LL  NPF  GDSS      +   + KF+ F+++  AL +G+   FT+I+ DP+ NS+I S     P  DPN+T E +ER+F+ENE+LGLND+NT+ Y
Sbjct:  370 DLLRNNPFLKGDSS------QETDRTKFKKFLDDIEALTSGKE-NFTVIIDDPMANSYIQSLTAPEP--DPNMTTEDYERTFEENEDLGLNDINTENY 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115491.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC8_ECTSI7.870e-7169.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K257_9PHAE9.900e-5164.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DIZ4_HETAK3.830e-2645.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D461_9STRA3.290e-2340.49Zpr1 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2XY77_9STRA3.050e-2144.30Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CEY4_9STRA5.050e-1959.15ZPR1 zinc-finger domain-containing protein (Fragme... [more]
A0A7S4A1G6_9STRA3.260e-1841.98Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2DCU7_9STRA2.180e-1735.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2S3B9_9STRA3.750e-1534.08Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
F2E5X6_HORVV5.340e-1544.90Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115491contigH-elongata_contig115491:303..1527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue9.1e-60
Seed eggNOG ortholog2880.D8LCC8
Preferred nameZPR1
KEGG koko:K06874,ko:K09025
KEGG Pathwayko03320,map03320
GOsGO:0000082,GO:0000083,GO:0000086,GO:0000226,GO:0000278,GO:0001701,GO:0001763,GO:0001824,GO:0001832,GO:0001833,GO:0001834,GO:0002009,GO:0002181,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006401,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007424,GO:0007430,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016604,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021510,GO:0022008,GO:0022402,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030575,GO:0030576,GO:0030971,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031641,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032880,GO:0032991,GO:0033120,GO:0033157,GO:0033267,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0034655,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035295,GO:0036477,GO:0040007,GO:0040008,GO:0042023,GO:0042221,GO:0042306,GO:0042307,GO:0042594,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045893,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0060255,GO:0060341,GO:0060429,GO:0060446,GO:0060541,GO:0060548,GO:0060562,GO:0061138,GO:0061564,GO:0061770,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071363,GO:0071364,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071931,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0097504,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1900180,GO:1900182,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1902680,GO:1902742,GO:1903047,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990261,GO:1990782,GO:2000026,GO:2000112,GO:2000671,GO:2000672,GO:2001141
EggNOG free text desc.pre-mRNA catabolic process
EggNOG OGsCOG1779@1,KOG2703@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, ZPR1-type
Ec32 orthologEc-14_005230.1
Exons3
Model size504
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115491.1226.1prot_H-elongata_contig115491.1226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115491 303..1527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.404764-CDS-H-elongata_contig115491:302..4121622929669.404764-CDS-H-elongata_contig115491:302..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115491 303..412 +
1691679113.033261-CDS-H-elongata_contig115491:302..4121691679113.033261-CDS-H-elongata_contig115491:302..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115491 303..412 +
1622929669.4197586-CDS-H-elongata_contig115491:772..8931622929669.4197586-CDS-H-elongata_contig115491:772..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115491 773..893 +
1691679113.048786-CDS-H-elongata_contig115491:772..8931691679113.048786-CDS-H-elongata_contig115491:772..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115491 773..893 +
1622929669.4359565-CDS-H-elongata_contig115491:1254..15271622929669.4359565-CDS-H-elongata_contig115491:1254..1527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115491 1255..1527 +
1691679113.0607812-CDS-H-elongata_contig115491:1254..15271691679113.0607812-CDS-H-elongata_contig115491:1254..1527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115491 1255..1527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115491.1226.1

>prot_H-elongata_contig115491.1226.1 ID=prot_H-elongata_contig115491.1226.1|Name=mRNA_H-elongata_contig115491.1226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
AYANLLEGNPFFSGDSSTAHHGKESEAQKKFRAFMENFRALVAGEVLPFT
MIVGDPLGNSFIGSTDHENPADDPNITVERFERSFQENEELGLNDMNTDG
YESLPEGYVRPLESLSTLAEGEGEESAAHLIPHRVGTDHPIPFTKGQEEA
DNTRADGSRVPPRLKVL*
back to top

mRNA from alignment at H-elongata_contig115491:303..1527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115491.1226.1 ID=mRNA_H-elongata_contig115491.1226.1|Name=mRNA_H-elongata_contig115491.1226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1225bp|location=Sequence derived from alignment at H-elongata_contig115491:303..1527+ (Himanthalia elongata Himel1 dioecious)
GCATACGCCAACCTCCTCGAGGGAAACCCGTTCTTCAGCGGGGACTCTTC GACCGCGCATCACGGCAAGGAGAGCGAGGCGCAGAAGAAGTTCCGTGCGT TCATGGAAAAGTGAGGAAGAGGGCCTCCTAACTAGAAATAATAAATATAG TCGTCTTCCACGTCAAAGCGTTGGTTTAGTTAACATCCGCAGCAGCAGCC GGGTGATGAGATGAAGAAAAGGAAGAGAGAGGAGGGATTTTACTAACGCT TGCCTTCGTAATCTGAAGAGAAATACAGTATATAACAACACGATTCTGCT AGCTCTCGGCCTGAAATTTCGTGTGCGCTACCCTGCATCTCGCTTCATTG TCGTATATTTTCTGACGCCCATCGCACGTCCACCCCTCATGTCTCGCTCG GTTGTCGGTGGGCCGTTTCTCCGGTGGCCGGTGTCTACTCTCGAAATATG GGCGTGCGGTGACTTGTCAGTTTTCGGGCGTTGGTGGCTGGAGAGGTGCT GCCGTTCACTATGATCGTTGGGGATCCGTTAGGGAACAGCTTCATCGGTT CTACAGATCATGAAAACCCCGCGGACGATCCAAACATCACGGTGAGGCGG GGTTTCGTAAATGAGATTGACACACGACGCTGCGTGTACGTTGGCGGGTG GATGTTGCCGTCATCGTTGGCGAGCATGTCTTGAACTTAATATAAGTATG TATAGGATAAATTGGACGGTAAAGGTTACTGCGATTATGATTTTCCTATC GCGCGCCGAGCTGAGCCGATGCGGTGAACATTACAGCAGCGATTACCGGG AGAGCGTGGTCCATTGAAAGGCGAAAGTAACACATCTGAACGCGTTTTCG CCCGTCGCACACTCGTACTGATTGTACACCCACAAAATGCTGTGGCGCAT TCTCCTCCATCCCCTCCCCATCGGCCTTGTTCACGGGTGCTGCCGCAATA AGGTGGAGCGGTTCGAAAGAAGTTTCCAGGAAAACGAGGAGCTGGGGCTG AATGACATGAATACTGATGGATACGAGTCGCTGCCGGAGGGTTACGTCCG CCCACTAGAGTCACTTTCGACGCTTGCCGAAGGAGAGGGGGAAGAAAGCG CAGCACATCTCATCCCACACCGAGTTGGCACGGACCACCCGATACCGTTC ACGAAGGGACAAGAAGAGGCGGATAACACACGGGCGGACGGATCGAGGGT CCCCCCTCGTTTGAAAGTCTTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig115491:303..1527+

>mRNA_H-elongata_contig115491.1226.1 ID=mRNA_H-elongata_contig115491.1226.1|Name=mRNA_H-elongata_contig115491.1226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig115491:303..1527+ (Himanthalia elongata Himel1 dioecious)
GCATACGCCAACCTCCTCGAGGGAAACCCGTTCTTCAGCGGGGACTCTTC
GACCGCGCATCACGGCAAGGAGAGCGAGGCGCAGAAGAAGTTCCGTGCGT
TCATGGAAAAGCATACGCCAACCTCCTCGAGGGAAACCCGTTCTTCAGCG
GGGACTCTTCGACCGCGCATCACGGCAAGGAGAGCGAGGCGCAGAAGAAG
TTCCGTGCGTTCATGGAAAATTTTCGGGCGTTGGTGGCTGGAGAGGTGCT
GCCGTTCACTATGATCGTTGGGGATCCGTTAGGGAACAGCTTCATCGGTT
CTACAGATCATGAAAACCCCGCGGACGATCCAAACATCACGTTTTCGGGC
GTTGGTGGCTGGAGAGGTGCTGCCGTTCACTATGATCGTTGGGGATCCGT
TAGGGAACAGCTTCATCGGTTCTACAGATCATGAAAACCCCGCGGACGAT
CCAAACATCACGGTGGAGCGGTTCGAAAGAAGTTTCCAGGAAAACGAGGA
GCTGGGGCTGAATGACATGAATACTGATGGATACGAGTCGCTGCCGGAGG
GTTACGTCCGCCCACTAGAGTCACTTTCGACGCTTGCCGAAGGAGAGGGG
GAAGAAAGCGCAGCACATCTCATCCCACACCGAGTTGGCACGGACCACCC
GATACCGTTCACGAAGGGACAAGAAGAGGCGGATAACACACGGGCGGACG
GATCGAGGGTCCCCCCTCGTTTGAAAGTCTTGTGAGTGGAGCGGTTCGAA
AGAAGTTTCCAGGAAAACGAGGAGCTGGGGCTGAATGACATGAATACTGA
TGGATACGAGTCGCTGCCGGAGGGTTACGTCCGCCCACTAGAGTCACTTT
CGACGCTTGCCGAAGGAGAGGGGGAAGAAAGCGCAGCACATCTCATCCCA
CACCGAGTTGGCACGGACCACCCGATACCGTTCACGAAGGGACAAGAAGA
GGCGGATAACACACGGGCGGACGGATCGAGGGTCCCCCCTCGTTTGAAAG
TCTTGTGA
back to top