mRNA_H-elongata_contig115374.1220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115374.1220.1
Unique NamemRNA_H-elongata_contig115374.1220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115374.1220.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.240e-8
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 GTEKGDYAESVMVNDDSSLLVVFETGGSWDGPNIGGDDFAAVKLDSNGNEIWRWQVNKV 177
            GT + D      +  + S ++   T G+WDG N GG+D AA+KLD+ GNE+WR+Q   V
Sbjct:   11 GTSETDVFAGGAMGPNGSCVLAGATEGAWDGTNFGGNDMAAIKLDAEGNELWRYQDGSV 69
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BLAST of mRNA_H-elongata_contig115374.1220.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 4.840e-6
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:    1 GTEKGDYAESVMVNDDSSLLVVFETGGSWDGPNIGGD-DFAAVKLDSNGNEIWRWQ 165
            GT   D  ++     D  +++   T G W G   G + DFAAVKLD+NG E+WRWQ
Sbjct:  209 GTSSSDEIQAAAATGDGFVVLAGYTFGEWSGGLTGEECDFAAVKLDANGTEVWRWQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115374.1220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY76_9PHAE3.240e-842.37Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI4.840e-642.86Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115374contigH-elongata_contig115374:1610..1816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.7027287-CDS-H-elongata_contig115374:1609..18161622929668.7027287-CDS-H-elongata_contig115374:1609..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115374 1610..1816 -
1691679112.7151735-CDS-H-elongata_contig115374:1609..18161691679112.7151735-CDS-H-elongata_contig115374:1609..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115374 1610..1816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115374.1220.1prot_H-elongata_contig115374.1220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115374 1610..1816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115374.1220.1

>prot_H-elongata_contig115374.1220.1 ID=prot_H-elongata_contig115374.1220.1|Name=mRNA_H-elongata_contig115374.1220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GTEKGDYAESVMVNDDSSLLVVFETGGSWDGPNIGGDDFAAVKLDSNGNE
IWRWQVNKVGWICQDILR*
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mRNA from alignment at H-elongata_contig115374:1610..1816-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115374.1220.1 ID=mRNA_H-elongata_contig115374.1220.1|Name=mRNA_H-elongata_contig115374.1220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig115374:1610..1816- (Himanthalia elongata Himel1 dioecious)
GGGACAGAAAAAGGGGACTACGCAGAATCTGTGATGGTAAACGACGACAG
TTCCTTATTAGTAGTCTTTGAAACTGGTGGGAGTTGGGATGGTCCCAACA
TTGGTGGCGATGACTTTGCCGCGGTAAAGCTGGACTCCAATGGAAACGAA
ATATGGCGCTGGCAGGTGAACAAAGTAGGCTGGATATGTCAGGATATTTT
ACGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig115374:1610..1816-

>mRNA_H-elongata_contig115374.1220.1 ID=mRNA_H-elongata_contig115374.1220.1|Name=mRNA_H-elongata_contig115374.1220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig115374:1610..1816- (Himanthalia elongata Himel1 dioecious)
GGGACAGAAAAAGGGGACTACGCAGAATCTGTGATGGTAAACGACGACAG
TTCCTTATTAGTAGTCTTTGAAACTGGTGGGAGTTGGGATGGTCCCAACA
TTGGTGGCGATGACTTTGCCGCGGTAAAGCTGGACTCCAATGGAAACGAA
ATATGGCGCTGGCAGGTGAACAAAGTAGGCTGGATATGTCAGGATATTTT
ACGCTAGGGGACAGAAAAAGGGGACTACGCAGAATCTGTGATGGTAAACG
ACGACAGTTCCTTATTAGTAGTCTTTGAAACTGGTGGGAGTTGGGATGGT
CCCAACATTGGTGGCGATGACTTTGCCGCGGTAAAGCTGGACTCCAATGG
AAACGAAATATGGCGCTGGCAGGTGAACAAAGTAGGCTGGATATGTCAGG
ATATTTTACGCTAG
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