mRNA_H-elongata_contig11536.1219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11536.1219.1
Unique NamemRNA_H-elongata_contig11536.1219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11536.1219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11536contigH-elongata_contig11536:1140..4314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2037
Cds size1185
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11536.1219.1prot_H-elongata_contig11536.1219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11536 1163..3485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.57784-UTR-H-elongata_contig11536:1139..11621622929668.57784-UTR-H-elongata_contig11536:1139..1162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11536 1140..1162 +
1691679112.6679213-UTR-H-elongata_contig11536:1139..11621691679112.6679213-UTR-H-elongata_contig11536:1139..1162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11536 1140..1162 +
1622929668.6369126-UTR-H-elongata_contig11536:3485..43141622929668.6369126-UTR-H-elongata_contig11536:3485..4314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11536 3486..4314 +
1691679112.7005355-UTR-H-elongata_contig11536:3485..43141691679112.7005355-UTR-H-elongata_contig11536:3485..4314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11536 3486..4314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.5890853-CDS-H-elongata_contig11536:1162..12891622929668.5890853-CDS-H-elongata_contig11536:1162..1289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11536 1163..1289 +
1691679112.6753953-CDS-H-elongata_contig11536:1162..12891691679112.6753953-CDS-H-elongata_contig11536:1162..1289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11536 1163..1289 +
1622929668.599731-CDS-H-elongata_contig11536:1835..19041622929668.599731-CDS-H-elongata_contig11536:1835..1904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11536 1836..1904 +
1691679112.6827614-CDS-H-elongata_contig11536:1835..19041691679112.6827614-CDS-H-elongata_contig11536:1835..1904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11536 1836..1904 +
1622929668.6180944-CDS-H-elongata_contig11536:2496..34851622929668.6180944-CDS-H-elongata_contig11536:2496..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11536 2497..3485 +
1691679112.689887-CDS-H-elongata_contig11536:2496..34851691679112.689887-CDS-H-elongata_contig11536:2496..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11536 2497..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11536.1219.1

>prot_H-elongata_contig11536.1219.1 ID=prot_H-elongata_contig11536.1219.1|Name=mRNA_H-elongata_contig11536.1219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=395bp
MADGNNARGEEGEDGLEGISMGNSRPHAVVAQPCTGKAFISSVTDVKGDS
ATKSDVGKNQAEDSLGPTALLTVVNHWLCDKAGEFHTFPLDLHVVSLEIC
AACRTVAAARVHVRSVSQLHVLTLGGSATRMPILRARAVVWDLSLAQLSP
DVELLKDLHCLMFGDEFNEPIASLVWPPFLRKLTFGWKFNQPVVGFKWQA
SLLELTLGGSFDQPVVGIELPSSLKTLTFGKCFNQAVVGVEWPASLRRLT
FSGRFNQAIVGAIWPACLERLTLSQCFNQPVVGIVLPASLQELAFGTFFD
RPIIGVQWPISLQQLSFGNCFNQPIIGIEWPASLRQLTFGRYFDQPILGV
VWPESLQELILGGKFNQSIDGILWPSSLEILWVRNRQVDIGNAS*
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mRNA from alignment at H-elongata_contig11536:1140..4314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11536.1219.1 ID=mRNA_H-elongata_contig11536.1219.1|Name=mRNA_H-elongata_contig11536.1219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3175bp|location=Sequence derived from alignment at H-elongata_contig11536:1140..4314+ (Himanthalia elongata Himel1 dioecious)
AAGCGCGTGTTCACCTGGCGATAATGGCTGACGGAAATAACGCTAGGGGG
GAAGAAGGCGAAGACGGCCTAGAGGGAATATCGATGGGAAACTCCAGGCC
ACATGCCGTTGTTGCCCAGCCATGCACAGGCAAAGCCTTTATATCTTCAG
GTGGGGTCCAGCGTGAAGTCTCGCGGCCAACTTTAGAAGGTGCTGGGGTT
TGTTAACTATTTCGACCTAGTGAGCTATGTTTTGTGTGTAATACATTGAG
ACGTCGTCAGCCGGATGAATACCTGCCACATATTCGGGCGTGCGTCGGTC
GTTCTTTAATATGCTTGGGAATGTTCCGTAAATGGTTTGCTCCGATGTTC
CACCGAAGTTGTAAAAGCATCCCCACAACCACAATTATTAAGTTTTATGG
AGAGTTGTTGTTGGCCAGGCACCTGAAGAAATAATAACATCACCCCTTCT
AAAAGACCCTCGACTAAATGAGGTGGCATGCACCCATTAAACTTAAGAAG
TAACTTATAGTATAGTTCTAGACGACAGTCTCGTCTACGCTTGGACTAAA
GCTTGACCCTCATTCAGTATTGATTTAGTTAGCCTGGGTCCTCTGATGGA
AGAATCCAATACATGAGCAAGTCACAGAGGTAAATATCGACCTAACCAAT
GTTTTGTGCCGCAATACATCGCACAACGTTTCGCTGCACGCTGCAGTTAC
CGACGTCAAGGGAGACTCAGCAACCAAATCTGATGTTGGTAAGAATCAGG
CGGAAGATTCGTTAGGTAAGAAGCTTTGGGTTACCAGCTGTTGCATACAG
CGAATAATTGTCTTAATTGTGGTTAGCTTAGCGCTTCCGGGAACAGAGAA
GGCTGCCCGCTTGATGTCAAAATTCGGCATGTGACGTCCTTCCCTGCGGT
ATTTTATGAGAGGGTCCAAACCTTTATTGTCGGTAGTGGGAATATTCACT
GACACTGAGCGGAACGGAAAGAGATATATTCCCCGCTAAGTAATTATCAC
AGACTATACGAGATAAATTAACTGTGATACCTGCGAGCTCAAATGACTTT
GGCCGCGATTACTGCCGCCAAACTCCCGGCATGTACCTCACATGTCTATA
TAGGTATACCTATTATTTGCCATCGGATAGGGAATAGACATAGAATACGA
GCAAGTAATGGCGGAAGCAACACAGGCATGTCACGATGCAAGCAGTCACT
CCATGAAAGGGGCGCATGGAATGTAAATAACCTGTCGATATCTCGAGAGT
CTGTAATCTATTTTCTCGAAGAAACAAGTAATGATTTTCCCTCATCCCAC
TCCCCTGCCTCTTGTCCAATTTTGTGCGACAATACATTTATGAACGAGGT
CTATTAGGCCCCACCGCTCTTCTGACAGTGGTGAACCACTGGCTCTGCGA
CAAGGCCGGGGAGTTCCATACTTTCCCGCTCGATCTACATGTAGTGTCGC
TTGAGATATGCGCAGCGTGTCGGACCGTCGCAGCCGCGCGCGTGCACGTC
AGAAGCGTTTCCCAACTACACGTTTTGACTTTAGGTGGCTCGGCAACACG
GATGCCGATTCTGCGGGCTCGGGCGGTTGTGTGGGACCTATCACTGGCCC
AGCTTTCCCCGGATGTTGAGCTCTTGAAAGATTTGCATTGCTTGATGTTT
GGGGACGAGTTTAACGAGCCGATCGCCAGTTTGGTGTGGCCACCGTTTCT
GAGGAAGTTAACATTCGGATGGAAGTTCAACCAGCCGGTCGTCGGATTTA
AGTGGCAGGCCTCCTTGCTTGAGTTAACGCTCGGAGGCTCATTTGACCAG
CCCGTCGTTGGAATTGAGTTACCGAGCTCTCTGAAGACGCTGACGTTTGG
TAAGTGTTTTAACCAGGCAGTTGTGGGCGTGGAGTGGCCAGCCTCGCTTA
GGCGTTTGACGTTTTCTGGAAGGTTTAATCAGGCAATCGTGGGAGCAATA
TGGCCAGCCTGTCTTGAGCGTCTCACCCTCTCACAGTGCTTCAACCAGCC
CGTTGTTGGAATAGTGTTGCCGGCCTCCCTGCAAGAGCTAGCGTTCGGCA
CGTTCTTCGACAGACCGATTATAGGAGTCCAGTGGCCTATCTCGCTGCAG
CAACTGTCCTTCGGAAACTGTTTTAACCAACCAATTATCGGAATCGAGTG
GCCGGCCTCTCTGCGGCAGCTGACATTCGGGCGGTACTTCGACCAGCCCA
TCCTGGGAGTGGTGTGGCCCGAATCGTTGCAGGAGCTGATCTTGGGGGGA
AAGTTCAACCAGTCAATTGACGGAATTCTGTGGCCTTCCTCACTAGAAAT
ACTGTGGGTGAGAAATCGGCAAGTGGATATAGGAAACGCCTCCTAATGTT
TCAATAGATTTTGCTGATCAAATAAAGGATTCCGCACCCAACGAATCGTT
TGATTCGACGTAATGTTGCTTACAAAGTGTTGCCGAATACCTTCCATGAA
ATATCAAGGAGTTGAAATGACACTGTCAGTCATGCGTTTACCCCGTTTTT
TCGCATCTGATATAATAAGGCTTGGACAAGGTTTTGTCAAGACGTGCGGT
AATCTGTATTGATGCCAGCCATGTTGTCATTGATAGAATTCACCACCTTG
CATGGCTTGCCGCTTCTATTTGTTTCTGCATTAAACCCTACGTTTGGGCT
GTAAGGTGCTATGGCGGGTTTTCTTTTCCGTTTGGTAGATTTGAAACATG
TGTGATTGCGTTTTGTATCGGGCATGTATTTTGTTCCTTACCGCGGCGCT
GGAAATATCCGTCGGCGTAAATTGCGCCCGTGCGTGCGTGCGTGCGCGTG
TCCAGTGACGTTTAAACGACATTGTTAACCGTTGACCCGATGAATTTACA
AATGGGGAACACGAACAACACATATGACGTTTCTGTGCTTAATTGTAGTA
ATATCCAAATTCGGACATGACGATAGTGGGTCCCCTGGACTACACCTTGC
ATGGTGCTAAGAAGGAGTGGATGTTCGACGGGTCTTAATGACTTCATATG
TTTTTTAATAGAAACTACAATCGTCGAGGTGTTCTGAGCTCAACGATTCA
TGTATGAGTGAATTGACGCTCCTCTCCCGCCAAAGATATCGCTTAGTTTC
TACGGCCGCTTTAGATCATTGTATCTCAAATAGATTATATGCGGGTACTT
GGGTGCGGATGTAATGTGATGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig11536:1140..4314+

>mRNA_H-elongata_contig11536.1219.1 ID=mRNA_H-elongata_contig11536.1219.1|Name=mRNA_H-elongata_contig11536.1219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2370bp|location=Sequence derived from alignment at H-elongata_contig11536:1140..4314+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGACGGAAATAACGCTAGGGGGGAAGAAGGCGAAGACGGCCTAGA
GGGAATATCGATGGGAAACTCCAGGCCACATGCCGTTGTTGCCCAGCCAT
GCACAGGCAAAGCCTTTATATCTTCAGATGGCTGACGGAAATAACGCTAG
GGGGGAAGAAGGCGAAGACGGCCTAGAGGGAATATCGATGGGAAACTCCA
GGCCACATGCCGTTGTTGCCCAGCCATGCACAGGCAAAGCCTTTATATCT
TCAGTTACCGACGTCAAGGGAGACTCAGCAACCAAATCTGATGTTGGTAA
GAATCAGGCGGAAGATTCGTTAGTTACCGACGTCAAGGGAGACTCAGCAA
CCAAATCTGATGTTGGTAAGAATCAGGCGGAAGATTCGTTAGGCCCCACC
GCTCTTCTGACAGTGGTGAACCACTGGCTCTGCGACAAGGCCGGGGAGTT
CCATACTTTCCCGCTCGATCTACATGTAGTGTCGCTTGAGATATGCGCAG
CGTGTCGGACCGTCGCAGCCGCGCGCGTGCACGTCAGAAGCGTTTCCCAA
CTACACGTTTTGACTTTAGGTGGCTCGGCAACACGGATGCCGATTCTGCG
GGCTCGGGCGGTTGTGTGGGACCTATCACTGGCCCAGCTTTCCCCGGATG
TTGAGCTCTTGAAAGATTTGCATTGCTTGATGTTTGGGGACGAGTTTAAC
GAGCCGATCGCCAGTTTGGTGTGGCCACCGTTTCTGAGGAAGTTAACATT
CGGATGGAAGTTCAACCAGCCGGTCGTCGGATTTAAGTGGCAGGCCTCCT
TGCTTGAGTTAACGCTCGGAGGCTCATTTGACCAGCCCGTCGTTGGAATT
GAGTTACCGAGCTCTCTGAAGACGCTGACGTTTGGTAAGTGTTTTAACCA
GGCAGTTGTGGGCGTGGAGTGGCCAGCCTCGCTTAGGCGTTTGACGTTTT
CTGGAAGGTTTAATCAGGCAATCGTGGGAGCAATATGGCCAGCCTGTCTT
GAGCGTCTCACCCTCTCACAGTGCTTCAACCAGCCCGTTGTTGGAATAGT
GTTGCCGGCCTCCCTGCAAGAGCTAGCGTTCGGCACGTTCTTCGACAGAC
CGATTATAGGAGTCCAGTGGCCTATCTCGCTGCAGCAACTGTCCTTCGGA
AACTGTTTTAACCAACCAATTATCGGAATCGAGTGGCCGGCCTCTCTGCG
GCAGCTGACATTCGGGCGGTACTTCGACCAGCCCATCCTGGGAGTGGTGT
GGCCCGAATCGTTGCAGGAGCTGATCTTGGGGGGAAAGTTCAACCAGTCA
ATTGACGGAATTCTGTGGCCTTCCTCACTAGAAATACTGTGGGTGAGAAA
TCGGCAAGTGGATATAGGAAACGCCTCCTAAGCCCCACCGCTCTTCTGAC
AGTGGTGAACCACTGGCTCTGCGACAAGGCCGGGGAGTTCCATACTTTCC
CGCTCGATCTACATGTAGTGTCGCTTGAGATATGCGCAGCGTGTCGGACC
GTCGCAGCCGCGCGCGTGCACGTCAGAAGCGTTTCCCAACTACACGTTTT
GACTTTAGGTGGCTCGGCAACACGGATGCCGATTCTGCGGGCTCGGGCGG
TTGTGTGGGACCTATCACTGGCCCAGCTTTCCCCGGATGTTGAGCTCTTG
AAAGATTTGCATTGCTTGATGTTTGGGGACGAGTTTAACGAGCCGATCGC
CAGTTTGGTGTGGCCACCGTTTCTGAGGAAGTTAACATTCGGATGGAAGT
TCAACCAGCCGGTCGTCGGATTTAAGTGGCAGGCCTCCTTGCTTGAGTTA
ACGCTCGGAGGCTCATTTGACCAGCCCGTCGTTGGAATTGAGTTACCGAG
CTCTCTGAAGACGCTGACGTTTGGTAAGTGTTTTAACCAGGCAGTTGTGG
GCGTGGAGTGGCCAGCCTCGCTTAGGCGTTTGACGTTTTCTGGAAGGTTT
AATCAGGCAATCGTGGGAGCAATATGGCCAGCCTGTCTTGAGCGTCTCAC
CCTCTCACAGTGCTTCAACCAGCCCGTTGTTGGAATAGTGTTGCCGGCCT
CCCTGCAAGAGCTAGCGTTCGGCACGTTCTTCGACAGACCGATTATAGGA
GTCCAGTGGCCTATCTCGCTGCAGCAACTGTCCTTCGGAAACTGTTTTAA
CCAACCAATTATCGGAATCGAGTGGCCGGCCTCTCTGCGGCAGCTGACAT
TCGGGCGGTACTTCGACCAGCCCATCCTGGGAGTGGTGTGGCCCGAATCG
TTGCAGGAGCTGATCTTGGGGGGAAAGTTCAACCAGTCAATTGACGGAAT
TCTGTGGCCTTCCTCACTAGAAATACTGTGGGTGAGAAATCGGCAAGTGG
ATATAGGAAACGCCTCCTAA
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