mRNA_H-elongata_contig115233.1212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115233.1212.1
Unique NamemRNA_H-elongata_contig115233.1212.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: D7G3D1_ECTSI (Rad21_Rec8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3D1_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.770e-18
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            NIL+PTVPLALR+SGHLLLGLVRIYSRKVKYLMSDASEALVKIQM
Sbjct:   43 NILQPTVPLALRMSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 87
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: W7TL72_9STRA (Mitotic cohesin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL72_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.210e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM D S+AL KI+M
Sbjct:   43 SIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKM 87
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A7S3YM80_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM80_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.890e-15
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            +I+ PTVPLALRVSGHLLLGL RIYSRKVKYLM+D SEALVKI+M
Sbjct:   45 SIVNPTVPLALRVSGHLLLGLTRIYSRKVKYLMTDCSEALVKIKM 89
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: B8C9U8_THAPS (Rad21_Rec8_N domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9U8_THAPS)

HSP 1 Score: 71.6 bits (174), Expect = 4.410e-15
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            +I+ PTVPLALRVSGHLLLG+VRIYSRKV+YLM D  EA+VKI+M
Sbjct:   44 SIVNPTVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKM 88
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A7S2XQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ04_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.740e-15
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM D  EA+VKI+M
Sbjct:   44 SIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMHDCHEAMVKIKM 88
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: K0RNW5_THAOC (Rad21_Rec8_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RNW5_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 2.220e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM+D  EA+VKI+M
Sbjct:   44 SIVNPTVPLALRVSGHLLLGVVRIYSRKVKYLMTDCHEAMVKIKM 88
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A6U6IWB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IWB3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.070e-14
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQMV---GLQG 150
            +I+ P VPLALRVSGHLLLG+VRIYSRKV+YLM D  EA+VKI+M    G++G
Sbjct:   44 SIVNPAVPLALRVSGHLLLGVVRIYSRKVRYLMHDCHEAMVKIKMAFRPGVEG 96
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BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A421EYK2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EYK2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.060e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            NI+ P VPLALRVSGHLLLG+VRIYSRKVKYL SD SEALVKI++
Sbjct:   62 NIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKL 106
[Close]
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A421GXK5_9STRA (Rad21_Rec8_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GXK5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.080e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            NI+ P VPLALRVSGHLLLG+VRIYSRKVKYL SD SEALVKI++
Sbjct:   62 NIVNPQVPLALRVSGHLLLGVVRIYSRKVKYLYSDCSEALVKIKL 106
[Close]
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Match: A0A4D9CUA7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUA7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.290e-14
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQM 135
            +I+ PTVPLALRVSGHLLLG+VRIYSRKVKYLM D S+AL KI+M
Sbjct:   43 SIVHPTVPLALRVSGHLLLGVVRIYSRKVKYLMEDCSQALTKIKM 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115233.1212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D1_ECTSI9.770e-1895.56Rad21_Rec8_N domain-containing protein n=2 Tax=Ect... [more]
W7TL72_9STRA1.210e-1580.00Mitotic cohesin n=1 Tax=Nannochloropsis gaditana T... [more]
A0A7S3YM80_HETAK1.890e-1584.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8C9U8_THAPS4.410e-1577.78Rad21_Rec8_N domain-containing protein (Fragment) ... [more]
A0A7S2XQ04_9STRA4.740e-1580.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K0RNW5_THAOC2.220e-1480.00Rad21_Rec8_N domain-containing protein n=1 Tax=Tha... [more]
A0A6U6IWB3_9STRA4.070e-1467.92Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A421EYK2_9STRA6.060e-1482.22Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A421GXK5_9STRA6.080e-1482.22Rad21_Rec8_N domain-containing protein n=3 Tax=Phy... [more]
A0A4D9CUA7_9STRA8.290e-1480.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115233contigH-elongata_contig115233:41..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog2880.D7G3D1
Preferred nameRAD21L1
KEGG koko:K06670
KEGG Pathwayko04110,ko04111,map04110,map04111
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000981,GO:0001228,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005721,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010972,GO:0016043,GO:0016070,GO:0016322,GO:0016363,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030182,GO:0030893,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034991,GO:0035295,GO:0035825,GO:0042551,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044821,GO:0044877,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045876,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051984,GO:0051985,GO:0060255,GO:0061458,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070197,GO:0070727,GO:0071168,GO:0071695,GO:0071704,GO:0071840,GO:0072520,GO:0080090,GO:0090068,GO:0090220,GO:0090304,GO:0097159,GO:0097240,GO:0097659,GO:0098687,GO:0098813,GO:0099086,GO:0140013,GO:0140014,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902680,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905818,GO:1905819,GO:2000112,GO:2000816,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsKOG1213@1,KOG1213@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.7708776-CDS-H-elongata_contig115233:40..1991622929667.7708776-CDS-H-elongata_contig115233:40..199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115233 41..199 -
1691679112.3460832-CDS-H-elongata_contig115233:40..1991691679112.3460832-CDS-H-elongata_contig115233:40..199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115233 41..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115233.1212.1prot_H-elongata_contig115233.1212.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115233 41..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115233.1212.1

>prot_H-elongata_contig115233.1212.1 ID=prot_H-elongata_contig115233.1212.1|Name=mRNA_H-elongata_contig115233.1212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
NILEPTVPLALRVSGHLLLGLVRIYSRKVKYLMSDASEALVKIQMVGLQG
FR*
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mRNA from alignment at H-elongata_contig115233:41..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115233.1212.1 ID=mRNA_H-elongata_contig115233.1212.1|Name=mRNA_H-elongata_contig115233.1212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig115233:41..199- (Himanthalia elongata Himel1 dioecious)
AACATTCTCGAGCCGACAGTACCGCTGGCGCTGCGTGTGTCGGGACATCT
GTTGCTTGGGCTGGTTCGTATATACTCCCGGAAAGTGAAGTACCTCATGT
CCGATGCCAGCGAAGCCCTGGTCAAGATTCAAATGGTGGGTCTGCAAGGT
TTCCGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig115233:41..199-

>mRNA_H-elongata_contig115233.1212.1 ID=mRNA_H-elongata_contig115233.1212.1|Name=mRNA_H-elongata_contig115233.1212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig115233:41..199- (Himanthalia elongata Himel1 dioecious)
AACATTCTCGAGCCGACAGTACCGCTGGCGCTGCGTGTGTCGGGACATCT
GTTGCTTGGGCTGGTTCGTATATACTCCCGGAAAGTGAAGTACCTCATGT
CCGATGCCAGCGAAGCCCTGGTCAAGATTCAAATGGTGGGTCTGCAAGGT
TTCCGTTGAAACATTCTCGAGCCGACAGTACCGCTGGCGCTGCGTGTGTC
GGGACATCTGTTGCTTGGGCTGGTTCGTATATACTCCCGGAAAGTGAAGT
ACCTCATGTCCGATGCCAGCGAAGCCCTGGTCAAGATTCAAATGGTGGGT
CTGCAAGGTTTCCGTTGA
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