mRNA_H-elongata_contig11523.1211.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI) HSP 1 Score: 344 bits (883), Expect = 1.340e-107 Identity = 178/208 (85.58%), Postives = 192/208 (92.31%), Query Frame = 1
Query: 1 MSQSIDEVLLGT-MKARGSSDDEGEG--DKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEFGLPEVGDAGDPE---GIAEVVETLLEDVDSYLDEASGKGANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLELAPV 606
MSQSIDEVLLGT + G D+EGEG DKFVRQLFESLLLGTRASNAIPDGE QEDYAYNATFPEFR+RAEGCGKQVLE+IQIFLNHV QEGE GLPEVGDAGDPE GIA+VVETLLEDVDSYLDEA+GKGANQQVALMRHQLKTVASAARSGPAKYA+MV+NVVD+PKPQEAF+ EIDN RDTPFVP+LREKPNA+TPL+LAP+
Sbjct: 1 MSQSIDEVLLGTPARGAGGGDEEGEGEGDKFVRQLFESLLLGTRASNAIPDGEGQEDYAYNATFPEFRSRAEGCGKQVLEVIQIFLNHVSQEGELGLPEVGDAGDPEVFQGIADVVETLLEDVDSYLDEAAGKGANQQVALMRHQLKTVASAARSGPAKYASMVSNVVDMPKPQEAFQEEIDNSRDTPFVPKLREKPNAVTPLDLAPI 208
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A7S3UZH7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UZH7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.190e-19 Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 1
Query: 82 FVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGE-FGLPEVGDAGDP------EGIAEVVETLLEDVDSYLDEA-------SGK-------GANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
F + L+ +L+ GT+ASN++P E EDY+Y A+ PEF+ + K+++ LI F + V E F L E+ DA DP E +A+VV+ LLE+VDSYLDEA SG AN QV + + +L A +G ++ + +I +PQ F IDN R +PF+P+L+ K +A+ PL
Sbjct: 20 FEKNLYNALVHGTKASNSLPGDE--EDYSYYASLPEFKDKIGNFRKRIVNLIYKFASRVDSSDELFKLHELIDA-DPADFETFEPVADVVDLLLENVDSYLDEARRHSDNLSGLEKSNPSINANAQVEVSKSELVRDVRAGLNG------VITHDANIQRPQMNFDDAIDNSR-SPFIPKLKHKVHAIVPL 200
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: UPI001457F2D4 (exosome component 10-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457F2D4) HSP 1 Score: 80.1 bits (196), Expect = 5.690e-14 Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query: 79 KFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEF--GLPEVGDAGDP-EGIAEVVETLLEDVDSYLDEASG-----------KGANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLE 594
+F ++ ++L T++SN +P +D+ Y ++F FR + GKQ+L ++Q + H G+ G +V D D + + + + +LE V S+LDEASG +Q A K SAA+S PA Y + A +I +PQ F+ ++DN PFVPR++EKPNAL LE
Sbjct: 25 EFTQKTLRAVLQATKSSNELPAAG--DDFDYYSSFQGFRDILDIEGKQILHIVQNVMQHQNVRGKLSHGSSDVLDLEDKFDVLTDANDQILERVGSWLDEASGIKKKDNTLVIASATPKQQASTSWNKKKSTSAAKS-PASYHLLSAK--NILRPQLRFKDKVDNGNQ-PFVPRIKEKPNALKSLE 204
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: H3BAQ0_LATCH (HRDC domain-containing protein n=3 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BAQ0_LATCH) HSP 1 Score: 77.8 bits (190), Expect = 3.590e-13 Identity = 69/214 (32.24%), Postives = 110/214 (51.40%), Query Frame = 1
Query: 22 VLLGTMKARGSSDDE---GE-------GDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSGPA----KYATM-VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
V GT G++++E GE D FV+ +++ T+AS +P + ++Y + +FP FRA E G ++L+ + + +H+R + + E+ D D + + + +LE V +LDEASG NQQ L ++ V+S R G A K T + + +IP+PQ FR +IDN +TPFVP++ KPNAL PL
Sbjct: 8 VGSGTKSKTGTAENEEKEGEVIPGFKDADSFVKYALGTVVTATKASGGLP--QAGDEYDFYCSFPGFRAFCESQGDRLLKCMSQLMQYHGCRSHIRDCNK--VTELEDKFDL--LVDSNDVILERVGIFLDEASGVNKNQQPVLPVGLQPPKTIVSSWNRKGSAANKSKSETFRLLHAKNIPRPQIKFREKIDNS-NTPFVPKIFIKPNALKPL 214
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A210Q5R3_MIZYE (Exosome component 10 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q5R3_MIZYE) HSP 1 Score: 73.6 bits (179), Expect = 1.030e-11 Identity = 55/183 (30.05%), Postives = 93/183 (50.82%), Query Frame = 1
Query: 88 RQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFLNHVRQEGEF--GLPEVGDAGDP-EGIAEVVETLLEDVDSYLDEASG-----------KGANQQVALMRHQLKTVASAARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLE 594
++ ++L T+ASN +P +D+ Y ++F FR + GK++L ++Q + H G G ++ D D + + + + +LE V S+LDEASG +Q A K SA +S + + N++ +PQ F+ ++DN R+ PFVPR++EKPNA+ LE
Sbjct: 3 QKTLRAVLQATKASNDMPAAG--DDFDYYSSFQGFRDILDIEGKRILHIVQNVMQHQNVRGRLSHGSSDILDLEDKFDVLTDANDQILERVGSWLDEASGIKKKDNTLVLATATPKQQASSSWNKKKSTSATKSAASYHLLSAKNIL---RPQLRFKDKVDN-RNQPFVPRIKEKPNAMKSLE 179
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A8C8VKJ9_9SAUR (Exosome component 10 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VKJ9_9SAUR) HSP 1 Score: 72.4 bits (176), Expect = 2.600e-11 Identity = 63/188 (33.51%), Postives = 97/188 (51.60%), Query Frame = 1
Query: 70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVALMRH-QL-KTVASA-----ARSGPAKYATM-VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
+ D FV+ +++ T+ASN +P + ++Y + +FP FRA E G ++L + + +H++ + E+ D D + + + +LE V LDEA+G NQQ L QL KTV S+ S K T + + +I +PQ FR +IDN +TPFVP+L KPNAL PL
Sbjct: 80 DADSFVKHALGTVVAATKASNGLP--QAGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHIKDRSKA--TELEDKFDL--LVDSNDVILERVGILLDEAAGVNKNQQPILPAGMQLPKTVISSWNRKSGESNRTKSETFRLLHAKNITRPQFKFREKIDNS-NTPFVPKLFVKPNALKPL 260
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A7L4N9W6_9AVES (EXOSX protein (Fragment) n=1 Tax=Ceyx cyanopectus TaxID=390723 RepID=A0A7L4N9W6_9AVES) HSP 1 Score: 72.0 bits (175), Expect = 3.370e-11 Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 1
Query: 43 ARGSSDDEGEG-----------DKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVALMRHQL--KTVASA-------ARSGPAKYATMVANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
A G + EG G D FV+ +++ T+ASN +P + ++Y + +FP FRA E G+++L + + +H+R + + E+ D D + + + +LE V LDEA+G NQQ L +T+ S+ + G + + +I +PQ FR ++DN +TPFVP+L KPNAL PL
Sbjct: 26 AAGLAGSEGSGSAAVLPGFDDVDAFVKHALGTVVAATKASNGLP--QPGDEYDFYRSFPGFRAFCETQGERLLHCMSRVMQHHGCRSHLRDRSK--VTELEDKFDM--LVDANDIILERVGILLDEAAGVNRNQQPVLPAGSQPPQTIISSWNRKAGESHKGSQSETFRLLHAKNISRPQLRFREKVDNS-NTPFVPKLCIKPNALKPL 227
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: A0A8D2LBW2_VARKO (Exosome component 10 n=3 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LBW2_VARKO) HSP 1 Score: 72.0 bits (175), Expect = 3.500e-11 Identity = 58/192 (30.21%), Postives = 101/192 (52.60%), Query Frame = 1
Query: 70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSG--PAKYATM----VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPLELA 600
+ D FV+ +++ T+AS+ +P + ++Y + +FP F+A E G ++L+ + + +H++ + E+ D D + + + +LE V LDEA+G NQQ L ++ ++S R G +K+A + + +IP+PQ FR ++DN +TPFVP+L KPNAL PL A
Sbjct: 33 DADSFVKHALGTVVSATKASSGLP--QPGDEYDFYRSFPGFQAYCETQGDRLLQCMSRVMQYHGCRSHLQDHSKA--TELEDKFDL--LVDANDAILERVGMLLDEAAGVNRNQQPVLPVGLQPPKTIISSWNRKGGEASKWARQDTFRLLHAKNIPRPQLRFREKVDNS-NTPFVPKLFVKPNALKPLSEA 217
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: K7FBX4_PELSI (HRDC domain-containing protein n=23 Tax=Cryptodira TaxID=8464 RepID=K7FBX4_PELSI) HSP 1 Score: 72.0 bits (175), Expect = 3.500e-11 Identity = 58/188 (30.85%), Postives = 95/188 (50.53%), Query Frame = 1
Query: 70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSGPAKYATM-----VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
+ D FV+ +++ T+ASN +P + ++Y + +FP FRA E G ++L + + +HV+ + E+ D D + + + +LE V LDEA+G NQQ L M+ ++S R + T + + +I +PQ FR +IDN +TPF+P+L KPNAL PL
Sbjct: 45 DADSFVKHALGTVVAATKASNGLP--QPGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHVKDHNKA--TELEDKFDL--LVDSNDVILEKVGILLDEAAGVNKNQQPILPAGMQVPKTIISSWNRKSGESHRTKSEIFRLLHAKNITRPQLRFREKIDNS-NTPFIPKLFVKPNALKPL 225
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Match: M7CKC7_CHEMY (Non-specific serine/threonine protein kinase n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7CKC7_CHEMY) HSP 1 Score: 72.0 bits (175), Expect = 3.810e-11 Identity = 59/188 (31.38%), Postives = 95/188 (50.53%), Query Frame = 1
Query: 70 EGDKFVRQLFESLLLGTRASNAIPDGERQEDYAYNATFPEFRARAEGCGKQVLELIQIFL------NHVRQEGEFGLPEVGDAGDPEGIAEVVETLLEDVDSYLDEASGKGANQQVAL---MRHQLKTVASAARSGPAKYATM-----VANVVDIPKPQEAFRGEIDNDRDTPFVPRLREKPNALTPL 591
+ D FV+ +++ T+ASN +P + ++Y + +FP FRA E G ++L + + +H++ + E+ D D + + + +LE V LDEA+G NQQ L M+ V+S R + T + + +I +PQ FR +IDN +TPFVP+L KPNAL PL
Sbjct: 775 DADSFVKHALGTVVAATKASNGLP--QPGDEYDFYRSFPGFRAYCETQGDRLLHCMSKVMQYHGCRSHIKDRSKA--TELEDKFDL--LVDSNDVILERVGILLDEAAGVNKNQQPILPAGMQLPKTIVSSWNRKSGESHRTKSETFRLLHAKNITRPQLKFREKIDNS-NTPFVPKLFVKPNALKPL 955 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11523.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11523.1211.1 >prot_H-elongata_contig11523.1211.1 ID=prot_H-elongata_contig11523.1211.1|Name=mRNA_H-elongata_contig11523.1211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp MSQSIDEVLLGTMKARGSSDDEGEGDKFVRQLFESLLLGTRASNAIPDGEback to top mRNA from alignment at H-elongata_contig11523:615..3171- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11523.1211.1 ID=mRNA_H-elongata_contig11523.1211.1|Name=mRNA_H-elongata_contig11523.1211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2557bp|location=Sequence derived from alignment at H-elongata_contig11523:615..3171- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11523:615..3171- >mRNA_H-elongata_contig11523.1211.1 ID=mRNA_H-elongata_contig11523.1211.1|Name=mRNA_H-elongata_contig11523.1211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig11523:615..3171- (Himanthalia elongata Himel1 dioecious)back to top |