mRNA_H-elongata_contig115211.1210.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115211.1210.1
Unique NamemRNA_H-elongata_contig115211.1210.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig115211.1210.1 vs. uniprot
Match: D7FTF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF4_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 7.040e-30
Identity = 76/137 (55.47%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:    1 NAATEEGCLEQANSLIMLLKADVRALNICAVRFLPPPSEVEHAADSTADTTDVAVSAYGAETIERLMRRFRQIDTSDSSKG-IEAMSATKQLIVMRERLQAGLSARLLGLKADMENEFGCAFADIESCLLTEKGTSA 408
            N AT+E CL+QANSLIMLLKADVR LN CA R L P SE     DS   T++V  SAY  ETIER                 I+A+SAT QL+++RERLQAGLS+RLL LK  M+ EFG AF D+ES L  EK T A
Sbjct:   38 NVATDEECLKQANSLIMLLKADVRVLNACAARLLLP-SEAAIVTDSA--TSEVPRSAYNVETIERXXXXXXXXXXXXXXXXXIQAVSATNQLLLIRERLQAGLSSRLLELKTKMDKEFGTAFVDMESYLRMEKDTQA 171
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BLAST of mRNA_H-elongata_contig115211.1210.1 vs. uniprot
Match: A0A6H5JEQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.350e-24
Identity = 70/149 (46.98%), Postives = 83/149 (55.70%), Query Frame = 1 
Query:    1 NAATEEGCLEQANSLIMLLKADVRALNICAVRFLPPPSEV-------------EHAADS-TADTTDVAV--SAYGAETIERLMRRFRQIDTSDSS-KGIEAMSATKQLIVMRERLQAGLSARLLGLKADMENEFGCAFADIESCLLTEK 396
            N AT+E CL+QANSLIMLLKADVR LN CA R L P                  H+ D    DTT      SAY  ETI                   ++A+SAT QL+++RERLQAGLS+RLL LK +M+ EFG AF D+ES L  EK
Sbjct:    8 NVATDEECLKQANSLIMLLKADVRVLNACAARLLLPSDAAIVTDSATNEIPRRSHSGDGHLKDTTTFPHENSAYSVETIXXXXXXXXXXXXXXXXXSSLQAVSATNQLLLIRERLQAGLSSRLLELKTEMDKEFGTAFVDMESYLRMEK 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115211.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTF4_ECTSI7.040e-3055.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEQ6_9PHAE9.350e-2446.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115211contigH-elongata_contig115211:795..1824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue2.1e-25
Seed eggNOG ortholog2880.D7FTF4
EggNOG OGs2EUYJ@1,2SX17@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001140.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.6279132-CDS-H-elongata_contig115211:794..9611622929667.6279132-CDS-H-elongata_contig115211:794..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115211 795..961 +
1691679112.2708354-CDS-H-elongata_contig115211:794..9611691679112.2708354-CDS-H-elongata_contig115211:794..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115211 795..961 +
1622929667.6436565-CDS-H-elongata_contig115211:1568..18241622929667.6436565-CDS-H-elongata_contig115211:1568..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115211 1569..1824 +
1691679112.2819316-CDS-H-elongata_contig115211:1568..18241691679112.2819316-CDS-H-elongata_contig115211:1568..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115211 1569..1824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115211.1210.1prot_H-elongata_contig115211.1210.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115211 795..1824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115211.1210.1

>prot_H-elongata_contig115211.1210.1 ID=prot_H-elongata_contig115211.1210.1|Name=mRNA_H-elongata_contig115211.1210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
NAATEEGCLEQANSLIMLLKADVRALNICAVRFLPPPSEVEHAADSTADT
TDVAVSAYGAETIERLMRRFRQIDTSDSSKGIEAMSATKQLIVMRERLQA
GLSARLLGLKADMENEFGCAFADIESCLLTEKGTSAAVVV*
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mRNA from alignment at H-elongata_contig115211:795..1824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115211.1210.1 ID=mRNA_H-elongata_contig115211.1210.1|Name=mRNA_H-elongata_contig115211.1210.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1030bp|location=Sequence derived from alignment at H-elongata_contig115211:795..1824+ (Himanthalia elongata Himel1 dioecious)
AACGCAGCGACGGAAGAAGGATGTCTCGAGCAGGCTAACTCTCTGATAAT
GCTTCTGAAGGCCGACGTCCGAGCGCTGAACATCTGCGCTGTGAGATTTC
TACCACCACCGTCGGAGGTTGAACACGCGGCCGACTCGACCGCTGATACC
ACCGACGTAGCTGTTAGGTACGAGAAGAAAAAGTAACGATGCATCGCCAA
ACGTATTATGCGTGTATTGTATTCCCGCGCTATAGATGATAACATAGGAT
AATTTATCTTTGCCGAAAGAGCGGCTTGTCGTCCGGCTTGAGGGAACTCC
TCGAGGCGCGGAGGCAAAGATCATTTTTTCCCTTTGCTTGTTTCTTGGGA
GAATTGGACATGGGCGGCGATTTCATGATATTTTTTCTCGGCTTCAAACG
CAATTTGACAGGCTATCTTCAGCCCGTCATCGGAAATGAACAGCTAGTTG
TGATTATCTGCTTGTAGTGGTACCATCAGTTGTGTGTCCTATGGCAGTCT
ATAGTTCAGGTACGAACGATTTATCATTGTGGGCATTGGCTACTCTGATG
TCTACACGCTAAGATTTTTTTCCTTTATTAAGACACAGATGGAGAATGCA
AAAACCGAATCAAACCAGCAGCATTAAGCGCAAACGGGGTAAATTTTGCC
GTTGAGGCAGTAGAAAAGTTCATCCCATCCCAAACAGCCAATATCACGGC
GTCGCGCGCCCCGTTTGCCGCTCCGGGTCGCCGATGAATGCATACCGGGT
CGGTGCCATCTTCTTCACACGCAGCGCTTACGGCGCGGAGACCATCGAGC
GACTCATGAGGAGATTTAGGCAGATCGACACCTCGGACAGCAGCAAGGGC
ATCGAGGCCATGTCGGCCACAAAGCAGCTGATAGTTATGCGCGAACGGCT
TCAGGCAGGGCTGAGTGCTCGACTGCTGGGCCTCAAAGCCGATATGGAAA
ATGAGTTTGGGTGCGCCTTCGCCGACATAGAGTCTTGCCTGCTAACCGAA
AAAGGTACGAGTGCTGCAGTAGTAGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig115211:795..1824+

>mRNA_H-elongata_contig115211.1210.1 ID=mRNA_H-elongata_contig115211.1210.1|Name=mRNA_H-elongata_contig115211.1210.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig115211:795..1824+ (Himanthalia elongata Himel1 dioecious)
AACGCAGCGACGGAAGAAGGATGTCTCGAGCAGGCTAACTCTCTGATAAT
GCTTCTGAAGGCCGACGTCCGAGCGCTGAACATCTGCGCTGTGAGATTTC
TACCACCACCGTCGGAGGTTGAACACGCGGCCGACTCGACCGCTGATACC
ACCGACGTAGCTGTTAGAACGCAGCGACGGAAGAAGGATGTCTCGAGCAG
GCTAACTCTCTGATAATGCTTCTGAAGGCCGACGTCCGAGCGCTGAACAT
CTGCGCTGTGAGATTTCTACCACCACCGTCGGAGGTTGAACACGCGGCCG
ACTCGACCGCTGATACCACCGACGTAGCTGTTAGCGCTTACGGCGCGGAG
ACCATCGAGCGACTCATGAGGAGATTTAGGCAGATCGACACCTCGGACAG
CAGCAAGGGCATCGAGGCCATGTCGGCCACAAAGCAGCTGATAGTTATGC
GCGAACGGCTTCAGGCAGGGCTGAGTGCTCGACTGCTGGGCCTCAAAGCC
GATATGGAAAATGAGTTTGGGTGCGCCTTCGCCGACATAGAGTCTTGCCT
GCTAACCGAAAAAGGTACGAGTGCTGCAGTAGTAGTGTAGCGCTTACGGC
GCGGAGACCATCGAGCGACTCATGAGGAGATTTAGGCAGATCGACACCTC
GGACAGCAGCAAGGGCATCGAGGCCATGTCGGCCACAAAGCAGCTGATAG
TTATGCGCGAACGGCTTCAGGCAGGGCTGAGTGCTCGACTGCTGGGCCTC
AAAGCCGATATGGAAAATGAGTTTGGGTGCGCCTTCGCCGACATAGAGTC
TTGCCTGCTAACCGAAAAAGGTACGAGTGCTGCAGTAGTAGTGTAG
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