mRNA_H-elongata_contig115152.1205.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115152.1205.1
Unique NamemRNA_H-elongata_contig115152.1205.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: D8LCF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCF0_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 2.870e-127
Identity = 186/210 (88.57%), Postives = 199/210 (94.76%), Query Frame = 1
Query:   19 NEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            +++ AA KK EIF+RAERYVKEYR QEND+IRFRREAKA GNI+VPAEA VV+V+RIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAAT+KMLRLVEPY+AYGYPNLKTVRELIYKRGFGKV KQRIPISDNSV+EG+LGK GIICVEDLIHEIYTVGP FK ANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKIN L+KRML
Sbjct:   38 DQKAAAAKKTEIFERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNFKAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALIKRML 247          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A836CG85_9STRA (Ribosomal protein L30, ferredoxin-like fold domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG85_9STRA)

HSP 1 Score: 313 bits (801), Expect = 1.280e-105
Identity = 155/205 (75.61%), Postives = 180/205 (87.80%), Query Frame = 1
Query:   34 AVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            A K+ E+F RA++Y +EY D +  AI  RR AK  GN YVPAEAK+ +VIRIRGIIGV PKVRKILQLLRLRQINN+VFVKLNAATIKMLRLVEPYIAYGYPNLKT+++L+YKRGFGKV+K RIPISDNSV+EG LGK+GI+ V+DLIHEIYTVGP FK+ANNFLWPFKLSNP GGF QKLLHFNEGG+AGQRG +IN +++ M+
Sbjct:   35 AAKRKELFVRAQKYEQEYNDADKAAIDLRRAAKKEGNFYVPAEAKLAVVIRIRGIIGVGPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTIKQLVYKRGFGKVRKSRIPISDNSVIEGVLGKYGIVGVDDLIHEIYTVGPHFKEANNFLWPFKLSNPTGGFTQKLLHFNEGGEAGQRGEEINKMIRLMV 239          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S2WW50_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW50_9STRA)

HSP 1 Score: 310 bits (793), Expect = 3.770e-104
Identity = 157/213 (73.71%), Postives = 179/213 (84.04%), Query Frame = 1
Query:   10 KLPNEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            K   E  AA  K+++ KRAE YV EY+  ENDAIR RREAK  G+ YVP E K+  V+RIRGIIGVSPKVRKILQLLRLRQI+N VFVKLN+ATIKMLRLVEPYIAYGYPNLK+ REL+ KRGFGKV KQRI ISDNSV+E  LGK+ IICVEDLIHEIYTVGP FK+A+NFLWP KLS+P GGF +KL+HFNEGG+AG RG KINGL+K+M+
Sbjct:   44 KAAAELKAAENKEQMLKRAETYVNEYKQMENDAIRLRREAKVAGSYYVPEEPKLAFVVRIRGIIGVSPKVRKILQLLRLRQIHNGVFVKLNSATIKMLRLVEPYIAYGYPNLKSTRELVLKRGFGKVNKQRIAISDNSVIEQVLGKYDIICVEDLIHEIYTVGPHFKEASNFLWPMKLSSPKGGFSRKLIHFNEGGEAGLRGDKINGLIKQMI 256          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S3V109_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V109_9STRA)

HSP 1 Score: 308 bits (790), Expect = 6.030e-104
Identity = 152/204 (74.51%), Postives = 179/204 (87.75%), Query Frame = 1
Query:   37 VKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            VK+ + FKRAE+YVKEY+  END +R +R AK+ GN+YV  E+K+++  RIRGIIG+SPKVRKILQLLRLRQI+N+VF+K N ATI MLRLVEP++AYGYP+LKTVREL+YKRGFGKV KQRIPI+DNSV+E  LGK  IICVEDLIHEIYTVGP FK A NFLWPFKLS+PNGGF++KLLHFNEGGDAG RGAKIN L+KRM+
Sbjct:   36 VKRSKAFKRAEQYVKEYKAAENDLVRLKRVAKSEGNLYVEPESKLIVATRIRGIIGISPKVRKILQLLRLRQIHNTVFLKANKATINMLRLVEPFVAYGYPSLKTVRELVYKRGFGKVNKQRIPIADNSVIEEVLGKKDIICVEDLIHEIYTVGPNFKAAANFLWPFKLSSPNGGFKRKLLHFNEGGDAGNRGAKINALIKRMI 239          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S4E8W3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8W3_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.840e-100
Identity = 148/203 (72.91%), Postives = 174/203 (85.71%), Query Frame = 1
Query:   40 KKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            KKD IFKRAE+Y  EY+ QENDAIR RREAK   +IYVP EAK+  VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKLN +TIKMLRLVEPYIAYG PNLKTVREL+YKRG+GKV KQR+PI +N+VVE  LGK+ I+CVED+IHE+YT GP FK+  NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+M+
Sbjct:   36 KKDVIFKRAEKYAAEYKQQENDAIRLRREAKKANSIYVPPEAKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLNGSTIKMLRLVEPYIAYGTPNLKTVRELVYKRGYGKVNKQRVPIDNNAVVEQVLGKYDIVCVEDVIHELYTTGPHFKEVANFLWPCKLSSPTGGFKMKLLHYNEGGDAGDRGEKIHELVKKMI 238          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A4D9CRP3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRP3_9STRA)

HSP 1 Score: 293 bits (751), Expect = 4.820e-98
Identity = 147/215 (68.37%), Postives = 174/215 (80.93%), Query Frame = 1
Query:    4 AIKLPNEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            A K   ++ A  K+ E  KRAE+Y+ EY+  END IR RREAKA G  YVPAEAKV  V+RIRGI GVSPKV+KILQLLRLRQI+N VF+KLN +T+ +LR VEPYIAYGYPNLK+VRELIYKRG+ KV KQR+P++DN++VE  LGK+G+ICVEDLIHEIYTVGP FKQA NFLWPFKLS+P GG++ K  HF EGGDAG RG KIN  +K +L
Sbjct:   23 AEKAAAKKAARAKRGETVKRAEKYMNEYKKLENDQIRLRREAKASGAFYVPAEAKVAFVMRIRGINGVSPKVKKILQLLRLRQIHNGVFIKLNGSTVNLLRWVEPYIAYGYPNLKSVRELIYKRGYAKVNKQRLPLTDNTLVEQELGKYGLICVEDLIHEIYTVGPHFKQAANFLWPFKLSSPKGGYKDKKTHFIEGGDAGARGDKINAFIKAVL 237          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A7S1G5B0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5B0_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.340e-98
Identity = 151/212 (71.23%), Postives = 176/212 (83.02%), Query Frame = 1
Query:   31 AAVKKD------EIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            AAV++D      E FKRAE+YVKEYR +E   +R RR+AK  GN +V  E K+ LV+RIRGI+GVSPKVRKILQLLRLRQINN+VFV++N AT  ML +VEPYIA+GYPNLKTVREL+YKRGFGKV KQRIP++DNSV+EG LGK  IICVEDL+HEI TVGP FK+ANNFLWPFKLS+P GGF +KL HFNEGG+AG R  KIN LV+RML
Sbjct:   29 AAVRRDAKKNRTEAFKRAEKYVKEYRAEERSLLRLRRQAKKAGNFFVEPEGKLALVVRIRGIMGVSPKVRKILQLLRLRQINNAVFVRINKATRNMLTIVEPYIAWGYPNLKTVRELVYKRGFGKVNKQRIPLTDNSVIEGVLGKKDIICVEDLVHEITTVGPAFKEANNFLWPFKLSSPLGGFSKKLRHFNEGGEAGCREDKINALVQRML 240          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: A0A2D4BFA6_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BFA6_PYTIN)

HSP 1 Score: 292 bits (748), Expect = 1.530e-97
Identity = 144/198 (72.73%), Postives = 168/198 (84.85%), Query Frame = 1
Query:   55 FKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            FK AE+YVKEYR  E   +  RR+AK+ GN YVPAEAK+  VIRIRGIIGVSPKVRKILQL RLRQI N VFVKLN ATI MLRLVEP++ YGYPNLKT RELIYKRGFGKV+ QRI ++DNS++E SLG  GIIC+EDLIHEI+TVGP FK+A+NFLWPF+LS+PNGG++QKLLHF EGGDAG RG +IN  +K++L
Sbjct:   43 FKSAEKYVKEYRQIEKQNVLLRRQAKSTGNFYVPAEAKLAFVIRIRGIIGVSPKVRKILQLFRLRQIQNGVFVKLNKATINMLRLVEPFVTYGYPNLKTTRELIYKRGFGKVRGQRIALTDNSIIEKSLGHHGIICIEDLIHEIFTVGPHFKEASNFLWPFQLSSPNGGYKQKLLHFCEGGDAGNRGEEINKFIKKVL 240          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: UPI001F045B80 (60S ribosomal protein L7-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F045B80)

HSP 1 Score: 292 bits (748), Expect = 1.690e-97
Identity = 144/198 (72.73%), Postives = 169/198 (85.35%), Query Frame = 1
Query:   52 IFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRM 645
            IFKRAE+YVKEYR +E+D IR +R AK  GN YVP+EAK+  VIRIRGI GVSP+VRKILQL RL QINN VFVKLN AT+ ML +++PY+A+GYPNLK+VRELIYKRGF K+ KQRIPI+DNS++E SLGKFGIICVEDLIHEI+T+GP FK+ANNFLWPFKLSNP GG R+K  HF EGGD G R  KINGL+++M
Sbjct:   45 IFKRAEQYVKEYRLKEHDEIRMKRMAKQFGNFYVPSEAKLAFVIRIRGINGVSPRVRKILQLFRLLQINNGVFVKLNKATLNMLNIIQPYVAFGYPNLKSVRELIYKRGFVKINKQRIPITDNSLIEESLGKFGIICVEDLIHEIFTIGPHFKEANNFLWPFKLSNPTGGLRKKRNHFVEGGDFGNREDKINGLIRKM 242          
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Match: F0XYU4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYU4_AURAN)

HSP 1 Score: 291 bits (745), Expect = 4.080e-97
Identity = 147/203 (72.41%), Postives = 172/203 (84.73%), Query Frame = 1
Query:   40 KKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIYVPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINGLVKRML 648
            KK+  FKRAE+Y+ EY+  ENDAIR RREAKA  +IYVP E K+  VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKL  AT KMLRLVEPYIAYG PNLK+VRE IYKRG+GKV K+R+PI +N+VVE  LGK+ IICVEDLIHEIYTVGP F++A NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+ML
Sbjct:   36 KKEVTFKRAEKYMAEYKAAENDAIRLRREAKAANSIYVPPEGKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLTGATTKMLRLVEPYIAYGEPNLKSVRECIYKRGYGKVNKKRVPIDNNAVVEDVLGKYDIICVEDLIHEIYTVGPHFREAANFLWPVKLSSPTGGFKAKLLHYNEGGDAGYRGEKIHELVKKML 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115152.1205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF0_ECTSI2.870e-12788.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG85_9STRA1.280e-10575.61Ribosomal protein L30, ferredoxin-like fold domain... [more]
A0A7S2WW50_9STRA3.770e-10473.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3V109_9STRA6.030e-10474.51Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S4E8W3_9STRA1.840e-10072.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CRP3_9STRA4.820e-9868.37Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1G5B0_9STRA5.340e-9871.23Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2D4BFA6_PYTIN1.530e-9772.73Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
UPI001F045B801.690e-9772.7360S ribosomal protein L7-like n=1 Tax=Xenia sp. Ca... [more]
F0XYU4_AURAN4.080e-9772.41Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115152contigH-elongata_contig115152:714..1364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.6e-99
Seed eggNOG ortholog2880.D8LCF0
Preferred nameRPL7
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1841@1,KOG3184@2759
Ec32 ortholog descriptionRibosomal protein L30, ferredoxin-like fold domain
Ec32 orthologEc-26_004750.1
EC2.7.11.22,2.7.11.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size651
Cds size651
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.1472337-CDS-H-elongata_contig115152:713..13641622929667.1472337-CDS-H-elongata_contig115152:713..1364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115152 714..1364 +
1691679112.0721684-CDS-H-elongata_contig115152:713..13641691679112.0721684-CDS-H-elongata_contig115152:713..1364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115152 714..1364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115152.1205.1prot_H-elongata_contig115152.1205.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115152 714..1364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115152.1205.1

>prot_H-elongata_contig115152.1205.1 ID=prot_H-elongata_contig115152.1205.1|Name=mRNA_H-elongata_contig115152.1205.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
SAIKLPNEQTAAVKKDEIFKRAERYVKEYRDQENDAIRFRREAKAMGNIY
VPAEAKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATIKM
LRLVEPYIAYGYPNLKTVRELIYKRGFGKVQKQRIPISDNSVVEGSLGKF
GIICVEDLIHEIYTVGPKFKQANNFLWPFKLSNPNGGFRQKLLHFNEGGD
AGQRGAKINGLVKRML*
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mRNA from alignment at H-elongata_contig115152:714..1364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115152.1205.1 ID=mRNA_H-elongata_contig115152.1205.1|Name=mRNA_H-elongata_contig115152.1205.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig115152:714..1364+ (Himanthalia elongata Himel1 dioecious)
TCGGCGATAAAACTCCCGAACGAACAGACAGCCGCGGTCAAGAAGGATGA GATCTTCAAGCGCGCCGAGCGATACGTGAAGGAGTACCGAGACCAGGAGA ACGATGCCATTCGTTTCCGCCGCGAGGCCAAGGCAATGGGAAACATCTAC GTGCCGGCAGAGGCGAAGGTGGTGCTCGTGATCCGCATCCGTGGTATCAT CGGGGTGTCTCCGAAGGTTCGCAAGATCCTGCAGCTGCTGCGCCTTCGCC AGATCAACAACTCGGTATTCGTAAAGCTGAACGCGGCGACCATCAAGATG CTCCGCCTCGTGGAGCCGTACATAGCCTACGGGTACCCCAACCTGAAGAC CGTGCGCGAGCTGATCTACAAGCGTGGCTTTGGCAAGGTCCAGAAGCAGC GCATCCCCATCTCAGACAACTCGGTTGTTGAGGGTTCCCTAGGCAAGTTC GGTATAATCTGTGTCGAAGATCTGATCCACGAGATCTACACGGTGGGACC GAAGTTTAAGCAGGCTAACAATTTCCTCTGGCCCTTCAAGCTTTCCAACC CCAACGGTGGCTTCCGCCAGAAACTGCTCCACTTCAACGAGGGTGGCGAC GCCGGCCAGCGCGGCGCCAAGATCAACGGCCTCGTTAAGCGCATGCTCTA A
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Coding sequence (CDS) from alignment at H-elongata_contig115152:714..1364+

>mRNA_H-elongata_contig115152.1205.1 ID=mRNA_H-elongata_contig115152.1205.1|Name=mRNA_H-elongata_contig115152.1205.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig115152:714..1364+ (Himanthalia elongata Himel1 dioecious)
TCGGCGATAAAACTCCCGAACGAACAGACAGCCGCGGTCAAGAAGGATGA
GATCTTCAAGCGCGCCGAGCGATACGTGAAGGAGTACCGAGACCAGGAGA
ACGATGCCATTCGTTTCCGCCGCGAGGCCAAGGCAATGGGAAACATCTAC
GTGCCGGCAGAGGCGAAGGTGGTGCTCGTGATCCGCATCCGTGGTATCAT
CGGGGTGTCTCCGAAGGTTCGCAAGATCCTGCAGCTGCTGCGCCTTCGCC
AGATCAACAACTCGGTATTCGTAAAGCTGAACGCGGCGACCATCAAGATG
CTCCGCCTCGTGGAGCCGTACATAGCCTACGGGTACCCCAACCTGAAGAC
CGTGCGCGAGCTGATCTACAAGCGTGGCTTTGGCAAGGTCCAGAAGCAGC
GCATCCCCATCTCAGACAACTCGGTTGTTGAGGGTTCCCTAGGCAAGTTC
GGTATAATCTGTGTCGAAGATCTGATCCACGAGATCTACACGGTGGGACC
GAAGTTTAAGCAGGCTAACAATTTCCTCTGGCCCTTCAAGCTTTCCAACC
CCAACGGTGGCTTCCGCCAGAAACTGCTCCACTTCAACGAGGGTGGCGAC
GCCGGCCAGCGCGGCGCCAAGATCAACGGCCTCGTTAAGCGCATGCTCTA
ATCGGCGATAAAACTCCCGAACGAACAGACAGCCGCGGTCAAGAAGGATG
AGATCTTCAAGCGCGCCGAGCGATACGTGAAGGAGTACCGAGACCAGGAG
AACGATGCCATTCGTTTCCGCCGCGAGGCCAAGGCAATGGGAAACATCTA
CGTGCCGGCAGAGGCGAAGGTGGTGCTCGTGATCCGCATCCGTGGTATCA
TCGGGGTGTCTCCGAAGGTTCGCAAGATCCTGCAGCTGCTGCGCCTTCGC
CAGATCAACAACTCGGTATTCGTAAAGCTGAACGCGGCGACCATCAAGAT
GCTCCGCCTCGTGGAGCCGTACATAGCCTACGGGTACCCCAACCTGAAGA
CCGTGCGCGAGCTGATCTACAAGCGTGGCTTTGGCAAGGTCCAGAAGCAG
CGCATCCCCATCTCAGACAACTCGGTTGTTGAGGGTTCCCTAGGCAAGTT
CGGTATAATCTGTGTCGAAGATCTGATCCACGAGATCTACACGGTGGGAC
CGAAGTTTAAGCAGGCTAACAATTTCCTCTGGCCCTTCAAGCTTTCCAAC
CCCAACGGTGGCTTCCGCCAGAAACTGCTCCACTTCAACGAGGGTGGCGA
CGCCGGCCAGCGCGGCGCCAAGATCAACGGCCTCGTTAAGCGCATGCTCT
AA
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