mRNA_H-elongata_contig115069.1201.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 109 bits (273), Expect = 2.480e-27 Identity = 64/167 (38.32%), Postives = 85/167 (50.90%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKR--GQPA-------------KRLEHRVTEYCTAFGINPKCWMRAAQDAPEWHRKVEAGAEVF 456
LKAEV+E +LYGCVTWTL+ F KLR AH +LLR + R D+ LSY + L T CE I+ + KR L +AG V R H+ RLP+ +M G + GG + GQP K E + FG+ W AA+ +W+R + AE F
Sbjct: 2 LKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRT--DHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQF 166
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.640e-25 Identity = 62/154 (40.26%), Postives = 85/154 (55.19%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGA 447
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D+RLP ++ GEM GG RG RV E AF + + W +A+D+ W+ KVE GA
Sbjct: 44 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.900e-23 Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D+RLP ++ G M GG RG +R+ E AFG+ + W +A+D W+ K+E GA F
Sbjct: 221 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWF 374
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 102 bits (253), Expect = 4.990e-23 Identity = 61/157 (38.85%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D RLP ++ G M GG RG R+ EY AF + + W +A+D+ W+ KVE A F
Sbjct: 120 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDVAAWF 273
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.120e-22 Identity = 61/157 (38.85%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D RLP ++ G M GG RG+ R+ E AF + + W +A+D W+ KVE GA F
Sbjct: 171 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGRQESDWVSRLGEDLVAFNMRDEKQGGKWRESAKDPQVWYNKVEYGASWF 324
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.480e-22 Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+L+ + KL E HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D+RLP ++ G M GG RG R+ E AF + + W A+D W+ KVE GA F
Sbjct: 465 LQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGAKWKECAKDPEVWYNKVEDGAAWF 618
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5K065_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K065_9PHAE) HSP 1 Score: 102 bits (253), Expect = 2.830e-22 Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D+RLP ++ G M GG RG R+ E AF + + W +A+D W+ KVE GA +F
Sbjct: 633 LQAEVVETLLYGCASWSLTVEHYTKLNGTHRQFLTRCIG--WSKRQRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGDKWKESAKDPEVWYNKVEDGAALF 786
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5JEU3_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU3_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 3.670e-22 Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGA 447
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG + RM D RLP ++ G M GG RG R+ E AF + + W +A+D W+ KVE GA
Sbjct: 120 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGNIMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGA 270
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5KGF6_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF6_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 6.660e-22 Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDCE-CIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+L+ + KL HR L RC+ S R D LSY + L++ CE I+A + KR L +AG V RM D RLP ++ G M GG RG R+ E AF + + W +A+D W+ KVE A F
Sbjct: 16 LQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKHMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDVATWF 169
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Match: A0A6H5L618_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L618_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.340e-21 Identity = 62/157 (39.49%), Postives = 83/157 (52.87%), Query Frame = 1
Query: 1 LKAEVLEVMLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVLLRTDC-ECIQAAMMKRILHYAGRVARMHDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGINPKC----WMRAAQDAPEWHRKVEAGAEVF 456
L+AEV+E +LYGC +W+LS + KL HR L RC+ S R D LSY + L++ C E I+A + KR L +AG V RM D RLP ++ G M GG RG R+ E AF + + W +A+D W+ KVE GA F
Sbjct: 539 LQAEVVETLLYGCASWSLSVEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCKETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQESDWVPRLGEDLVAFNMRDEKEGGKWKESAKDPEVWYDKVEDGAAWF 692 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115069.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115069.1201.1 >prot_H-elongata_contig115069.1201.1 ID=prot_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp MLYGCVTWTLSPGDFDKLREAHRGMLLRCLNAYTSTRAAPDYHMLSYLEVback to top mRNA from alignment at H-elongata_contig115069:1632..2087- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115069.1201.1 ID=mRNA_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig115069:1632..2087- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115069:1632..2087- >mRNA_H-elongata_contig115069.1201.1 ID=mRNA_H-elongata_contig115069.1201.1|Name=mRNA_H-elongata_contig115069.1201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig115069:1632..2087- (Himanthalia elongata Himel1 dioecious)back to top |