mRNA_H-elongata_contig115063.1200.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI) HSP 1 Score: 139 bits (351), Expect = 1.760e-41 Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1
Query: 7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
DEDHTLGNALRHVLMQNK+VDFCGYSVPHPSEPKMNLRLQTTGRPALE+LKEGLRDLR LC+ILEERVE
Sbjct: 32 DEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVE 100
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.510e-30 Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTT-GRPALEVLKEGLRDLRSLCDILEERVE 213
DEDHTLGNALRHVLMQ + DFCGYSVPHPSEPKMNLRLQT G PA++VLK GL+DL ++CDIL+E+++
Sbjct: 32 DEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD 101
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: F0YN30_AURAN (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN30_AURAN) HSP 1 Score: 109 bits (273), Expect = 4.690e-30 Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 RDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
RDEDHTLGNALRHVLM+ +D DF GYSVPHPSEP MN+RLQTTGRPAL V+ +GL L S+CD L ++E
Sbjct: 5 RDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLAQLSSICDSLTGQLE 74
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S3JWW1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWW1_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.230e-29 Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 1
Query: 4 RDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCD 192
RDEDHTLGN+LRHVLM NKD +FCGYSVPHPSE +N+RLQTTG+PA EV++EGL DL ++CD
Sbjct: 23 RDEDHTLGNSLRHVLMNNKDTEFCGYSVPHPSESLVNIRLQTTGKPADEVMEEGLTDLANICD 85
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK) HSP 1 Score: 106 bits (265), Expect = 3.630e-28 Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1
Query: 10 EDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDIL 198
EDHTLGNALRHVLMQ K+ DFCGYSVPHP+EPKMN+RLQT G AL VL+ GL DL +CD+L
Sbjct: 60 EDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA) HSP 1 Score: 103 bits (257), Expect = 4.020e-27 Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 1
Query: 7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGR--PALEVLKEGLRDLRSLCDILEE 204
DE HTLGNALRHVLM+ K+ FCGYS+PHPSEPKMN+RLQTT + PA+++LK GL+DL +CD+++E
Sbjct: 35 DEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.320e-26 Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 10 EDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRP--ALEVLKEGLRDLRSLCDILEE 204
EDHTLGNALRHVLMQ ++ FCGYS+PHPSEPKMNLRLQT + A+++LK GL+DL +CD+++E
Sbjct: 36 EDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDE 102
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: UPI001EB0A69E (DNA-directed RNA polymerases I and III subunit RPAC2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0A69E) HSP 1 Score: 101 bits (251), Expect = 3.790e-26 Identity = 42/71 (59.15%), Postives = 58/71 (81.69%), Query Frame = 1
Query: 1 LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
+ +EDHTLGN+LR++LM++ DV FCGYS+PHPSE K+N R+QT G+PA EVLK+GL DL+ LC +++ E
Sbjct: 29 MHNEDHTLGNSLRYILMKSADVQFCGYSIPHPSETKINFRIQTNGKPATEVLKKGLEDLKKLCQHVQKTFE 99
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: C3YRU6_BRAFL (DNA-directed RNA polymerases I and III subunit RPAC2 (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3YRU6_BRAFL) HSP 1 Score: 100 bits (250), Expect = 4.170e-26 Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1
Query: 1 LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRSLCDILEERVE 213
L DEDHTLGNALR+++M+N DVDFCGYSVPHPSE K+NLR+Q+ G PA ++L+ GL +L +LC+ ++ E
Sbjct: 15 LHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQSRGPPAADILRRGLTELNALCEHVQNTFE 85
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA) HSP 1 Score: 100 bits (250), Expect = 5.680e-26 Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1
Query: 7 DEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTG-RPALEVLKEGLRDLRSLCDILE 201
DEDHTLGN+LRHVLM K+ FCGYSVPHPSEPKMN+RLQT+ +PAL+VLK+GL ++ +CD+ +
Sbjct: 32 DEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFD 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115063.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig115063.1200.1 >prot_H-elongata_contig115063.1200.1 ID=prot_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp LRDEDHTLGNALRHVLMQNKDVDFCGYSVPHPSEPKMNLRLQTTGRPALEback to top mRNA from alignment at H-elongata_contig115063:1149..1799- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig115063.1200.1 ID=mRNA_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig115063:1149..1799- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig115063:1149..1799- >mRNA_H-elongata_contig115063.1200.1 ID=mRNA_H-elongata_contig115063.1200.1|Name=mRNA_H-elongata_contig115063.1200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig115063:1149..1799- (Himanthalia elongata Himel1 dioecious)back to top |