mRNA_H-elongata_contig1149.1190.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1149.1190.1 vs. uniprot
Match: D8LDP3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI) HSP 1 Score: 682 bits (1759), Expect = 8.790e-222 Identity = 524/1124 (46.62%), Postives = 610/1124 (54.27%), Query Frame = 1
Query: 1 VETEETSDLVDTDDLSALGGXXXXXXXXXXXIFGQAPRGLHGCVAVILPRTTALTRSMDAPGKKSPVARTSR---------RRDLVRSPSRR----RDMGM---GGGSIGVYSTSFP---PPKS----------RMIRRFRTKVRQMRHVVAARVLQDTPARNTGGGTPSVP------------GGEGVPAAREPDLLAGMASDDTDYQKVRSRLNGQILELIAADVTEWLPRYCLPSAIARVHTSHGGRKVR-LSLLLLSKPIAGGGGGTKTGSPREASQSCDAT-------NSGKEEKDIDVDLVQPRVHHFVMTVPRKRQSPPASPAPIGLPPDSSQRGTREPRGNFGDRANNSHHPGNISGYGQKAPFNNVFGPSRHASSRRWG-TRPVKGSFPLAIDRESNLVLHAACATVWQKVERKPQRNEEKXXXXXXLQWMKGXXXXXXXXXXXXXXXEIETTAYVPRCVCALSFDPLFDTLRAVALARGGFPEAGRALMLGGGGRIGAGGSPAGFGGVSGRTEGLEDL------------------------------EAGM-LRWGLGDAATLQAAPPPLPILSPPTRPAAPTLPTVFSPATRIPAAGSESAVFSSRAPPLVQSLSAPESLGGWS------VESDESG-WAGSVGMAEAATAAADKTSSQADESRSSRERWSSFGLPPLVPLDHPVEPLFQALSSDNVLLTLSALVCERPVVVTCSVRSLLSVAVSSLKTLLHPLGWHHAYAPLLPATEIIGFWRSKLLLDKRAAMSQGRSGSPPRITPHQWGSSPGXXXXXXXXXXXXXLLIRPTPN-RAVPQPRFRPQTAFLVGLEGEVVRMACGKPRGVFANGAEGSKESGGGGDSGAEVWGVVSSESCMVPPNAE--VYAMGVAATQPSPALLETVRAMLKQSVHVDLDYDEVTWPPPVPPAVSPEDADVASRPNHGGKGGVGGGSFXXXXXEFRXXXXXXXXXXSTGGGLENDGAPPVWPEEAARRAKRVIQSTLFPEFEDFDLVSPTPPETSELGAEDDSALFKCSRSAGGGAEVSLRDKIQACRNSSTPVRDRFRAGVRGVVSRMTESVVGMYAPTPADLALRAAAAGLVASVLGRVKEFTTLFAQ 3099
V+TEE +D D DD + I GQAPRGLHG A+ T S D+ K++ T+ RR VRSP R R G G G + + S P PP + R++RRFRTKVRQMRHV+AARVLQD P R TGGG PSVP G G + +LLAGMAS DT+Y +VRSRLNGQILEL+AA+VTE LPRYCLPSAIARV G K R L + LS PI + G+ + + PRVHHFVMTVPRKR SP SP +G P S+ T G G G G +R S RRW + +G+FP AIDR+SN+VLH AC TVW+K + +E W + +TTAYVPRCVCALSFDPLFDTLRAVALARGG PE RALM+G GG GGV +AG+ L WGLGDAATL+A PPLPIL PP PTLP+VF+P+ A G ++A + PPLVQS SAP+S+GGWS ++E G W G A ++ + S+FGLPPLVPLDHPVEPLFQALSSDNVLL LSAL+CERPV+VTCSVRSLLS+AVSSLK LLHPL WHHAYAPLLPA E+ LDK+ A++ G SGSPPR+TP WG P XXXX TP RA P FLVGL+GE+VRMA K G G G EVWGV SSE+CMVP AE A G+A TQPSPALLE VR M+KQSVHVDLD+D++TWPPP P P + G GG E XXXXXXXXXX GAPPVWPEEAARRA+RV++STLFP+FE FD+V +L +DDSALFKCS +GGG E SLRDK++ACR S+ R GV G +TES+VGMY PT ADLALRAA AGLVASVLGRVKEFTTLFAQ
Sbjct: 245 VDTEEATDGEDNDDDTGPPAPAPSGAKGGT-ILGQAPRGLHGVAAIA---ATPAPGSPDSATKRAAATATAALPMKGRGQGRRGSVRSPPRPSGPPRAYGSPTDGAGRMASPARSSPQGVPPGAGEXXXXXXXGRLLRRFRTKVRQMRHVIAARVLQDMPPRKTGGGDPSVPRSDSAWGWDGEEGEGGEDELEDVELLAGMASSDTNYAEVRSRLNGQILELMAANVTEALPRYCLPSAIARVEAKKPGEKKRTLPKVDLSFPITFSSXXXXXXXXXXXXXXXXXXXXXXXLRHHGERGDGEAAEAMLPRVHHFVMTVPRKRSSPSVSPR-VGSP---SRMSTGRGGGGEGSXXXXREGAGXXXXXXXXXXXXRK-GVNRQESDRRWAIAKATQGTFPAAIDRDSNIVLHGACLTVWRKAD--SDEGDEGDL------WGRDSDDDDEEDGA-----RAKTTAYVPRCVCALSFDPLFDTLRAVALARGGHPETARALMVGRGG-----------GGVELSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKAGLRLEWGLGDAATLKAGRPPLPILPPPPPTPGPTLPSVFAPSLSRDAGG-DAARTLRKPPPLVQSNSAPDSMGGWSSTGEGGYSTEEEGPWRGXXXXXXXXXAIGGRSGDRIAGG------LSAFGLPPLVPLDHPVEPLFQALSSDNVLLALSALMCERPVLVTCSVRSLLSLAVSSLKALLHPLDWHHAYAPLLPAAEVA--------LDKKTALNHGGSGSPPRLTPGSWG--PSGRGGRGSPGXXXXXXXXXTPRVRATP---------FLVGLDGELVRMAMRKGGGSGKGVKAGPAGPG-------EVWGVASSEACMVPEGAEEEAGASGIATTQPSPALLEVVRCMVKQSVHVDLDHDDITWPPPQAPDTPPAE--------EGEGGGTAKTDSLGSGKEXXXXXXXXXXXXXXXXXXXXVGAPPVWPEEAARRARRVVKSTLFPDFETFDVVD-------DLDXDDDSALFKCSGLSGGGVEASLRDKVEACRTSAAAA-SAPRRGVSGGAGTLTESIVGMYIPTTADLALRAAVAGLVASVLGRVKEFTTLFAQ 1286
BLAST of mRNA_H-elongata_contig1149.1190.1 vs. uniprot
Match: A0A6H5JQ29_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE) HSP 1 Score: 602 bits (1553), Expect = 1.170e-196 Identity = 429/922 (46.53%), Postives = 499/922 (54.12%), Query Frame = 1
Query: 478 MASDDTDYQKVRSRLNGQILELIAADVTEWLPRYCLPSAIARVHTSHGGRKVR-LSLLLLSKPIAGGGGGTKTGSPREASQSCDAT----------NSGKEEKDIDVDLVQPRVHHFVMTVPRKRQSPPASPAPIGLPPDSSQRGTREPRGNFGDRANNSHHPGNISGYGQKAPFNNVFGPSRHASSRRWG-TRPVKGSFPLAIDRESNLVLHAACATVWQKVERKPQRNEEKXXXXXXLQWMKGXXXXXXXXXXXXXXXEIETTAYVPRCVCALSFDPLFDTLRAVALARGGFPEAGRALMLGGGGRIGAGGSPAGFGGVSGRTEGLEDL-------------------------------EAGM-LRWGLGDAATLQAAPPPLPILSPPTRPAAPTLPTVFSPATRIPAAGSESAVFSSRAPPLVQSLSAPESLGGWSVESDESGWAGSVGMAEAATAAADKTSSQADESRSSRERW-SSFGLPPLVPLDHPVEPLFQALSSDNVLLTLSALVCERPVVVTCSVRSLLSVAVSSLKTLLHPLGWHHAYAPLLPATEIIGFWRSKLLLDKRAAMSQGRSGSPPRITPHQWGSSPGXXXXXXXXXXXXXLLIRPTPNRAVPQPRFRPQTAFLVGLEGEVVRMACGKPRGVFANGAEGSKESGGGGDSGAEVWGVVSSESCMVPPNAE--VYAMGVAATQPSPALLETVRAMLKQSVHVDLDYDEVTWPPPVPPAVSPEDADVASRPNHGGKGGVGGGSFXXXXXEFRXXXXXXXXXXSTGGGLENDGAPPVWPEEAARRAKRVIQSTLFPEFEDFDLVSPTPPETSELGAEDD-SALFKCSRSAGGGAEVSLRDKIQACRNSSTPVRDRFRAGVRGVVSRMTESVVGMYAPTPADLALRAAAAGLVASVLGRVKEFTTLFAQ 3099
MAS DT+Y +VRSRLNGQILEL+AA+VTE LPRYCLPSAIARV G K R L + LS PI + + G+ + + PRVHHFVMTVPRKR D S++G + S RRW + +G+FP AIDR+SN+VLH AC TVW+K + ++E W + XXXX +TTAYVPRCVCALSFDPLFDTLRAVALARGG PE RALM+G GG GGV +AGM L WGLGDAATL+A PPLPIL PP PTLP++F+P+ A G + + + PPLVQS SAP+S+GGWS + S+FGLPPLVPLDHPVEPLFQALSSDNVLL LSAL+CERPV+VTCSVRSLLS+AVSSLK LLHPL WHHAYAPLLPA E++ FWRSK+ LDK+ A++ GRSGSPPRITP WG+S P P PR R T FLVGL+GE+VRMA GGG VWGV SSE CMVP AE A G+A TQPSPALLE VR ++KQSVHVDLD+D++TWPPP P P A +G G XE X G P VWPEEAARRA+RV+QSTLFP+FE FD+VS TPP+ + SALFKCS +GGGAE SLRDK++ACR S+ R G+ G +TES+VGMY PT ADLALRAA AGLVASVLGRVKEFTTLFAQ
Sbjct: 1 MASSDTNYAEVRSRLNGQILELMAANVTEALPRYCLPSAIARVEAKKPGEKKRALPKVDLSFPITFSSSSSLXXXXXXXXXXXXXXXXXLPLPPLPHHGERGDGEAAEAMLPRVHHFVMTVPRKRTGGXXX-XXXXXXXDGSRKGV-----------------------------------NLQESERRWAIAKATQGTFPAAIDRDSNIVLHGACLTVWRKAD--SDEDDEGDL------WGRDSDXXXXEDGT-----RAKTTAYVPRCVCALSFDPLFDTLRAVALARGGHPETARALMVGRGG-----------GGVELSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEKAGMRLEWGLGDAATLKAGRPPLPILPPPPPNPGPTLPSLFAPSLSREAGGDATGMLRNP-PPLVQSNSAPDSMGGWSFTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAFGLPPLVPLDHPVEPLFQALSSDNVLLALSALMCERPVLVTCSVRSLLSLAVSSLKALLHPLDWHHAYAPLLPAAEVVSFWRSKVALDKKTALNHGRSGSPPRITPGSWGAS------GRGGRGSPGXXXXPPPT-----PRVR-ATPFLVGLDGELVRMAMRN----------------GGGSGKGVVWGVASSEPCMVPEGAEEEAGASGIATTQPSPALLEVVRCIVKQSVHVDLDHDDITWPPPQAP--DPSTAXXXXXXXXSKTDSLGSGKEKKKGXE-EAAGATGDEGXXXXXXXXXVGVPLVWPEEAARRARRVVQSTLFPDFETFDVVSETPPQVDDFDXXXXXSALFKCSGLSGGGAEASLRDKVEACRTSAAAA-SASRRGISGGAGTLTESIVGMYIPTAADLALRAAVAGLVASVLGRVKEFTTLFAQ 829
BLAST of mRNA_H-elongata_contig1149.1190.1 vs. uniprot
Match: A0A6H5JUK7_9PHAE (RGS domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK7_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.800e-11 Identity = 60/141 (42.55%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 94 IFGQAPRGLHGCVAVILPRTTALTRSMDAPGKKSPVARTSR---------RRDLVRSPSRRRD--MGMGGGSIGVYSTSFP--------PPKS----------RMIRRFRTKVRQMRHVVAARVLQDTPARNTGGGTPSVP 429
I GQAPRGLHG A+ T + S D+ K++ A T+ RR VRSP R G + G + P PP + R++RRFRTKVRQMRHV+AARVLQD P R TGGG PSVP
Sbjct: 526 ILGQAPRGLHGVAAIA---ATPVPGSPDSATKRAAAAATAALPVEGRGQGRRGFVRSPPRPSGPPRAYGSPTDGAARKASPTRSSPQGVPPGAGEXXXXXXXXRLLRRFRTKVRQMRHVIAARVLQDMPPRKTGGGNPSVP 663 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1149.1190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1149.1190.1 >prot_H-elongata_contig1149.1190.1 ID=prot_H-elongata_contig1149.1190.1|Name=mRNA_H-elongata_contig1149.1190.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1033bp VETEETSDLVDTDDLSALGGGGRGSGGGGGGIFGQAPRGLHGCVAVILPRback to top mRNA from alignment at H-elongata_contig1149:154..15561- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1149.1190.1 ID=mRNA_H-elongata_contig1149.1190.1|Name=mRNA_H-elongata_contig1149.1190.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=15408bp|location=Sequence derived from alignment at H-elongata_contig1149:154..15561- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1149:154..15561- >mRNA_H-elongata_contig1149.1190.1 ID=mRNA_H-elongata_contig1149.1190.1|Name=mRNA_H-elongata_contig1149.1190.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6198bp|location=Sequence derived from alignment at H-elongata_contig1149:154..15561- (Himanthalia elongata Himel1 dioecious)back to top |