mRNA_H-elongata_contig114873.1189.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114873.1189.1
Unique NamemRNA_H-elongata_contig114873.1189.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114873.1189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114873contigH-elongata_contig114873:15..1855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size262
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114873.1189.1prot_H-elongata_contig114873.1189.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114873 72..1800 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.7484782-UTR-H-elongata_contig114873:14..711622929664.7484782-UTR-H-elongata_contig114873:14..71Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114873 15..71 +
1691679110.9595356-UTR-H-elongata_contig114873:14..711691679110.9595356-UTR-H-elongata_contig114873:14..71Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114873 15..71 +
1622929664.8034568-UTR-H-elongata_contig114873:1800..18551622929664.8034568-UTR-H-elongata_contig114873:1800..1855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114873 1801..1855 +
1691679110.981448-UTR-H-elongata_contig114873:1800..18551691679110.981448-UTR-H-elongata_contig114873:1800..1855Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114873 1801..1855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.765472-CDS-H-elongata_contig114873:71..2201622929664.765472-CDS-H-elongata_contig114873:71..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114873 72..220 +
1691679110.9667969-CDS-H-elongata_contig114873:71..2201691679110.9667969-CDS-H-elongata_contig114873:71..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114873 72..220 +
1622929664.7808459-CDS-H-elongata_contig114873:1799..18001622929664.7808459-CDS-H-elongata_contig114873:1799..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114873 1800..1800 +
1691679110.974077-CDS-H-elongata_contig114873:1799..18001691679110.974077-CDS-H-elongata_contig114873:1799..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114873 1800..1800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114873.1189.1

>prot_H-elongata_contig114873.1189.1 ID=prot_H-elongata_contig114873.1189.1|Name=mRNA_H-elongata_contig114873.1189.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MMSTILYIYLNKRNGYSTLYETNIFWDFYTRSTEIVFMGAKLSIPTSAT*
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mRNA from alignment at H-elongata_contig114873:15..1855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114873.1189.1 ID=mRNA_H-elongata_contig114873.1189.1|Name=mRNA_H-elongata_contig114873.1189.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1841bp|location=Sequence derived from alignment at H-elongata_contig114873:15..1855+ (Himanthalia elongata Himel1 dioecious)
CCTGGGGTCACCGGTCATCATGACCACCGGCAAGCCCCCGCCAGGTAAGT
ATGCTTGATGATGTCCACAATTCTTTACATATATCTGAATAAAAGAAACG
GCTATTCTACTCTATATGAAACTAACATCTTTTGGGACTTTTACACGCGA
TCCACGGAGATCGTTTTTATGGGCGCCAAGTTATCAATCCCAACTTCTGC
AACGTAAAACAGTGTTTCTGTCGTATGAAGTATGGCGATTTTTTATAAGA
ACGTTTTTTTCAGACGTTTGGGTTGACAGAACCTGGTGGGTTTTAGAACA
ATAATTTTATTTTTTAAAAAACTCATTAACAGGCTATTGAAGGAAAGAAA
ACAAATACAGAGAAACCGTTAGAGGGTCATCGACTTGTCATATATATGGG
CGTTGTTTCGCCAGCTTTAATTCCCATGGTTGGTTGTAAAACGACGAGGG
TTCTTAGTTCATTTTTATAGGGATATGTCACCAGTCAATACTTGGAGGGA
ACGCGGATGAGAGGCTGTATTTTTGAAGTACTTATTGCCAAAATATATTT
CTCAAACGTTTTTGGTGGACGATCGGATTGAAAACTTTCAGTTGCTAATG
ATATTATAGAGCATTTTACTACTTTAGAATGTAACTCTCTGGTTTCATAT
AGCGGCGTAGGATAGAAGAAAATATTTTGATAAGTTATATACCAGTAAAA
CAATTGTTCTCAAAGAATAACAAGTATAGGACAGCGCTGATCAGAAGGCG
TGGATGTTCAAAGGATTGGAATGACTTCAAGGTTTTTAAAAATAATAATC
GCCAGATTCATCCCTGGGTTGAGAGAACGGGCTGACGCGGGACGGGAGTG
AGCGCTGAACCCGCCTCGCGAGTCCAAATTTTCAGGTGCGGACGGGGACA
GGGGGAAAATATTTTCCCTGATCATTAGCTGACCACGAGGAGAAGGCAAC
CAAATCAGTTTGATCCTTCTGCTAAAAGTGAGACCAACAACAACAACTGA
GCCCTCAAAGCATTTTGTCCGCTGCTACCCACATCGCCTGCACGGCTTGT
CACGATGGGGTCGACTACCGGGCAGGCACCCAGACACACACGTTGTCCAT
ATTCTCAACTACTATTTACTATCGCGGTATTCCCTTTTGATCAGCTTGCA
TTAAACCGCACAAACCGGCAAGACACTTAAGGGGGTGACACGCCGGTTTG
AGAGTGGTCCCTCATTATTTATGGAGAGCTATCCCTGGGGACTGTTCAGC
AGACCACGAACGGGACTGTGCTGCTAATCGCAAAGAAAGTGTTCGGGTTG
GCAACCAATACGCTGAATGTAAGAAACAACAACAACAACAACAACAGGAC
GCTATAAATCCGGAAACAAACATCATTGTGTGCGACACAAACAAAACCAT
GTTTTACACTCTGCCTCATATAACTATCTATGCTTACCAACCTCTCCTAA
CTACATTTGAGTCTCTAAACCTAGTCTGGTACTTGCTATTTTTTATTTAA
AAAAGAAACAAAAATTATTTTTTAAAATCGTATGACGACTACTATAAATA
AAGCCGTTCTCCCTAGTCTGTCCCTATCATATGACAAGCACGACAACAAA
ACTAAGTCGATGACCCTCTAACGGCTTCTCTGTATTTTTTGTCTTTCCTT
TGATAGCCAGTTAATGAGTTTTTTTTTTCATGAAAATATTGTTCTAAAAA
CCCACCAGGTTCTATCGACCCAAACAACTGAAAAATACGTTCTTATAAAA
AATCGCGATTCTTCATACGACAGAAACATTGTTGTAACCCGTCCCGTCTT
TGGCCCGAATGGATAAACCACCAACCACCAACCATCACTCC
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Coding sequence (CDS) from alignment at H-elongata_contig114873:15..1855+

>mRNA_H-elongata_contig114873.1189.1 ID=mRNA_H-elongata_contig114873.1189.1|Name=mRNA_H-elongata_contig114873.1189.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig114873:15..1855+ (Himanthalia elongata Himel1 dioecious)
ATGATGTCCACAATTCTTTACATATATCTGAATAAAAGAAACGGCTATTC
TACTCTATATGAAACTAACATCTTTTGGGACTTTTACACGCGATCCACGG
AGATCGTTTTTATGGGCGCCAAGTTATCAATCCCAACTTCTGCAACGTAA
TGATGTCCACAATTCTTTACATATATCTGAATAAAAGAAACGGCTATTCT
ACTCTATATGAAACTAACATCTTTTGGGACTTTTACACGCGATCCACGGA
GATCGTTTTTATGGGCGCCAAGTTATCAATCCCAACTTCTGCAACGTAAA
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