mRNA_H-elongata_contig114862.1188.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: D8LEW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEW6_ECTSI) HSP 1 Score: 257 bits (656), Expect = 9.630e-80 Identity = 127/165 (76.97%), Postives = 141/165 (85.45%), Query Frame = 1
Query: 1 RYLESSSAEDVTRDMSSAVSQGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFS---GCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
+YLESSSAE +T+ M SAV QGLKAA G K+A + AEDAKGLLRMDL+GG+AG + S GCSWM+V GGD+ELTEEG+AQGASEFGT ++VGVALRKK WY EV LLTAGLMQIGWADHTFV GGPESGDGIGDV GSWAYDG R+QRWNE QSDYGEAWKV
Sbjct: 275 KYLESSSAEPMTQAMPSAVEQGLKAAARAGAKKAADHAEDAKGLLRMDLQGGQAGEKKSSSPGCSWMEVAGGDVELTEEGQAQGASEFGTARVVGVALRKKTWYFEVALLTAGLMQIGWADHTFVAGGPESGDGIGDVSGSWAYDGVRQQRWNEGQSDYGEAWKV 439
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S2STZ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STZ1_9STRA) HSP 1 Score: 128 bits (321), Expect = 5.530e-32 Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 1
Query: 25 EDVTRDMSSAVSQGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
E V ++ AV QG+K ++ E++ + + +L +DL G G + W+ + G++E G +G SEFG+ +GV+L++ KWY EV L ++G+MQ+GWADH F G E+GDG+GD K SWAYDG R+Q+WN D +DYG AW
Sbjct: 58 EAVADALNQAVLQGMKREAAVKKRKKEEKSVEQRKMLPVDLEGKMRGVRWGQEGWLGLLAGEIEFGGGGVVRGVSEFGSVCALGVSLKEGKWYYEVELRSSGVMQVGWADHLF-KGDSENGDGVGDDKHSWAYDGCRQQKWNGDGADYGLAWDT 210
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S2SSZ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSZ0_9STRA) HSP 1 Score: 128 bits (321), Expect = 2.570e-31 Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 1
Query: 25 EDVTRDMSSAVSQGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
E V ++ AV QG+K ++ E++ + + +L +DL G G + W+ + G++E G +G SEFG+ +GV+L++ KWY EV L ++G+MQ+GWADH F G E+GDG+GD K SWAYDG R+Q+WN D +DYG AW
Sbjct: 305 EAVADALNQAVLQGMKREAAVKKRKKEEKSVEQRKMLPVDLEGKMRGVRWGQEGWLGLLAGEIEFGGGGVVRGVSEFGSVCALGVSLKEGKWYYEVELRSSGVMQVGWADHLF-KGDSENGDGVGDDKHSWAYDGCRQQKWNGDGADYGLAWDT 457
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S1C952_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C952_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.000e-28 Identity = 69/170 (40.59%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 25 EDVTRD-MSSAVSQGLKAAXXXGFKRAVEQAEDA---KGLLRMDLRGGEAGNEFSGCSWMDVCGGD----MELTEEGRAQGA--------SEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
E+V+ D M++AV QGL A G KR +D+ + L +D+ G AG + G W+ GGD + + EG GA +EFG+ ++VG+A+ ++Y EV LLT GL+Q+GWAD FV G GDG+GD + SW+YDGAR+ W+ D +DYG WK
Sbjct: 52 EEVSSDAMAAAVRQGLGRAQAKGLKRRRGGEDDSDLGREFLPIDVSGQRAGLRWDGGHWLASVGGDGDVNVTMAPEGGGGGARFAEVDGRAEFGSARVVGLAVTAGRYYYEVELLTGGLLQVGWADGLFV-GNAGVGDGVGDHEHSWSYDGARQLSWSGDSADYGARWKA 220
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S2CQD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQD4_9STRA) HSP 1 Score: 110 bits (276), Expect = 2.890e-28 Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 151 GGEAGNEFSGCSWMDVCGGDMELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWN-EDQSDYGEAWKV 486
GG+AG SW+ + G+++ E G+ +G S+FG+ +GVAL + +WY E LLTAG+MQ+GWA+H F G +GDG+GD SWAYDG R+Q+WN + +D+G AW
Sbjct: 9 GGQAG------SWLGLLAGEVQFKEGGKVEGVSDFGSVCALGVALNEGRWYYEAELLTAGVMQVGWANHLF-RGDSSNGDGVGDDTNSWAYDGCRQQKWNGPEPADFGLAWSA 114
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: W4GHS0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GHS0_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.540e-17 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 184 SWMDVCGGDMELT-----EEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSD-YGEAWKV 486
SW+ G++ + E +G FGT + G AL + KWY EV LL+AG++Q+GWAD TF + GDG+GD SWAYDG R+ +W +S YG W
Sbjct: 309 SWLVPLNGNVHVKQSTAEENATVEGRGSFGTATVFGCALHRGKWYYEVELLSAGVIQVGWADATF-EADEDEGDGVGDHMASWAYDGCRQVKWTGGESAAYGAKWAA 414
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A8K1CUC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUC2_PYTOL) HSP 1 Score: 87.0 bits (214), Expect = 6.450e-17 Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 238 QGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNED-QSDYGEAWK 483
+G+ FGT + L KWY EV L+T G++Q+GWADHTFV E+GDG+GD SWAYDG R+ +WN + +YG AW+
Sbjct: 325 RGSGNFGTATMDECRLTSGKWYYEVKLITDGVIQLGWADHTFVANS-ETGDGVGDHARSWAYDGCRQLKWNAGKEEEYGVAWE 406
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A7S3YB49_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YB49_HETAK) HSP 1 Score: 82.4 bits (202), Expect = 1.540e-16 Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 214 ELTEEGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAW 480
+LT EG A G F + G L +WY EV LLTAG MQ+GWAD ++ G E+GDG+GD SWAYDG R+ RW++ ++G W
Sbjct: 13 DLTAEGVAAGG--FASVGCRGCLLDAGRWYFEVRLLTAGCMQLGWADAGYL-GNAETGDGVGDGPHSWAYDGWRQYRWHDGHREWGARW 98
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A1V9YML9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YML9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.050e-16 Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1
Query: 61 QGLKAAXXXGFKRAVEQAEDAKGLLRMDLRGGEAGNEFSGCSWMDVCGGDMELTE-----EGRAQGASEFGTTKIVGVALRKKKWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSD-YGEAWKV 486
+ L+ A ++ Q E A G R+ AG +W+ G++ +T+ + +G FGT + G AL +WY EV L TAG+MQ+GWAD TF E GDG+GD SWA+DG R+ +W ++ YG AW
Sbjct: 272 RALQQALSDQKQQLATQMEYAPGATRLASAVSTAG------AWLVPLHGNVVVTQATADADASVEGQGTFGTATVFGCALHSGRWYYEVQLGTAGVMQLGWADATFEADDDE-GDGVGDHAASWAFDGRRQLKWTAGEAAAYGAAWAA 412
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Match: A0A6H5JWE1_9PHAE (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWE1_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 4.750e-16 Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 190 MDVCGGD--MELTEEGRAQGASEFGTTKI--VGVALRKK--KWYMEVTLLTAGLMQIGWADHTFVPGGPESGDGIGDVKGSWAYDGARRQRWNEDQSDYGEAWKV 486
+ V GGD +E+ E R +S F T ++ VGV LR +WY EVTLLT GLMQ+GWA F P G G+GD SWA+DG R++RW + YG+ W+
Sbjct: 18 LQVMGGDALVEVIEGNRVTASSHFPTIRLSHVGVGLRSTGGRWYYEVTLLTGGLMQLGWAGPLFQCS-PARGQGVGDHMHSWAFDGFRQKRWCVSSAPYGKRWRA 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114862.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114862.1188.1 >prot_H-elongata_contig114862.1188.1 ID=prot_H-elongata_contig114862.1188.1|Name=mRNA_H-elongata_contig114862.1188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp RYLESSSAEDVTRDMSSAVSQGLKAAVKAGFKRAVEQAEDAKGLLRMDLRback to top mRNA from alignment at H-elongata_contig114862:601..1769+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114862.1188.1 ID=mRNA_H-elongata_contig114862.1188.1|Name=mRNA_H-elongata_contig114862.1188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-elongata_contig114862:601..1769+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114862:601..1769+ >mRNA_H-elongata_contig114862.1188.1 ID=mRNA_H-elongata_contig114862.1188.1|Name=mRNA_H-elongata_contig114862.1188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig114862:601..1769+ (Himanthalia elongata Himel1 dioecious)back to top |