mRNA_H-elongata_contig114842.1185.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114842.1185.1
Unique NamemRNA_H-elongata_contig114842.1185.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114842.1185.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.570e-43
Identity = 138/393 (35.11%), Postives = 183/393 (46.56%), Query Frame = 1 
Query:    1 PAGQYLLPGARETSRRRQLVGSDGR--------TARIGGGSVAMARLAATRVVTKPGIPLTGMNVGIAHPSPRTCESWGRVLSAAGAENVRRISG-PLLEEGDEAKNGKWAEGRGGMKARTRRTMSVDNVRPSRQHRXXXXXXXXXXXXXXESKGLSALAAALEGLDCVVCDYPSAWR-----DSHERAVPSGSGSGGIRRELRSGGRGALTLGLTRSQSCHRPGEYRQEGAMPKLGCLVTAARRESVRLVSLSWAINCAIRGTRIKQQSRAEYLSPFLDEALG-GREPRITAAVRASMMSRVHAFVARTGERYEVDDHVRYAAHGASGTEQSPSADGSGSGRSARGRENPRTGQDRS--------DVRVGRVVSLELA--PSGRVFIAIEPL 1104
            PA  YLLPGARE SRR                 TA+ GG S  ++R A  + V+K G PL GM +G+AHPSP TCE W +VL AAGA+ V RI+G PLL    + K   W        + +R T S    R +                   S   S  A  L GLDCV+CD+P AW      D  E    +G      RR +R  G      G    ++   P  +        LG +  AA+ E V +V+LSWA++C +RGTR++QQ+R EYL+PFLD ++  GR    + ++     +R+   V+R+G RYEV DHV ++A              +GSGR                          VGR+V LE A    GRVF  IEPL
Sbjct: 2713 PASPYLLPGAREASRRXXXXXXXXXXXXXXXXATAKAGG-SHKVSRAALAKAVSKTGTPLLGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRITGDPLLLLPPQEKTADWT-----TSSPSRGTRSCSRGRRT--------------AGASSSSSSSLQAGQLAGLDCVLCDFPGAWNGSGGGDDTECRAATG------RRPVRGNGGVPAIAGTATKKAKSSPPPF------SSLGLVFEAAKLEGVPVVALSWAMDCVVRGTRVRQQARPEYLTPFLDASVAAGRPSSRSQSLAGGTDTRLLVAVSRSGTRYEVGDHVYFSA--------------AGSGRGXXXXXXXXXXXXXXXXXXXXXXQAEVGRIVHLERAGGSGGRVFATIEPL 3059
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BLAST of mRNA_H-elongata_contig114842.1185.1 vs. uniprot
Match: D7FGY7_ECTSI (BRCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.730e-14
Identity = 66/191 (34.55%), Postives = 80/191 (41.88%), Query Frame = 1 
Query:    1 PAGQYLLPGARETSRRRQLVGSDGRTARIGGGSVAM-------ARLAATRVVTKPGIPLTGMNVGIAHPSPRTCESWGRVLSAAGAENVRRISG-PLL------EEG------DEAKNGKWAEGRGGMKARTRRTMSVDNVRPSRQHRXXXXXXXXXXXXXXESKGLSALAAALEGLDCVVCDYPSAWRDS 513
            PA  YLLPGARE SR                            + +A  + V+K G PL GM +G+AHPSP TCE W +VL AAGA+ V R++G PLL      EE            G W+  RG      RRT    +                       S   S  A  L GLDCV+CD+P AW  S
Sbjct:  531 PASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRG------RRTAGASS-----------------------SSSSSLQAEQLAGLDCVLCDFPGAWNGS 692
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114842.1185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L777_9PHAE2.570e-4335.11BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FGY7_ECTSI2.730e-1434.55BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114842contigH-elongata_contig114842:3..1232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-00_000140.1
Exons3
Model size1104
Cds size1104
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114842.1185.1prot_H-elongata_contig114842.1185.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114842 3..1232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.4199932-CDS-H-elongata_contig114842:2..5601622929664.4199932-CDS-H-elongata_contig114842:2..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114842 3..560 +
1691679110.8771343-CDS-H-elongata_contig114842:2..5601691679110.8771343-CDS-H-elongata_contig114842:2..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114842 3..560 +
1622929664.4361393-CDS-H-elongata_contig114842:623..9161622929664.4361393-CDS-H-elongata_contig114842:623..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114842 624..916 +
1691679110.8916514-CDS-H-elongata_contig114842:623..9161691679110.8916514-CDS-H-elongata_contig114842:623..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114842 624..916 +
1622929664.4590666-CDS-H-elongata_contig114842:979..12321622929664.4590666-CDS-H-elongata_contig114842:979..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114842 980..1232 +
1691679110.8992229-CDS-H-elongata_contig114842:979..12321691679110.8992229-CDS-H-elongata_contig114842:979..1232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114842 980..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114842.1185.1

>prot_H-elongata_contig114842.1185.1 ID=prot_H-elongata_contig114842.1185.1|Name=mRNA_H-elongata_contig114842.1185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=368bp
PAGQYLLPGARETSRRRQLVGSDGRTARIGGGSVAMARLAATRVVTKPGI
PLTGMNVGIAHPSPRTCESWGRVLSAAGAENVRRISGPLLEEGDEAKNGK
WAEGRGGMKARTRRTMSVDNVRPSRQHRKGEEGEKRSGVNGVESKGLSAL
AAALEGLDCVVCDYPSAWRDSHERAVPSGSGSGGIRRELRSGGRGALTLG
LTRSQSCHRPGEYRQEGAMPKLGCLVTAARRESVRLVSLSWAINCAIRGT
RIKQQSRAEYLSPFLDEALGGREPRITAAVRASMMSRVHAFVARTGERYE
VDDHVRYAAHGASGTEQSPSADGSGSGRSARGRENPRTGQDRSDVRVGRV
VSLELAPSGRVFIAIEPL
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mRNA from alignment at H-elongata_contig114842:3..1232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114842.1185.1 ID=mRNA_H-elongata_contig114842.1185.1|Name=mRNA_H-elongata_contig114842.1185.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1230bp|location=Sequence derived from alignment at H-elongata_contig114842:3..1232+ (Himanthalia elongata Himel1 dioecious)
CCCGCCGGTCAGTATCTCTTGCCCGGAGCTCGCGAAACCTCCCGAAGGCG
CCAGCTCGTGGGCAGTGACGGTAGAACAGCGCGAATAGGGGGAGGATCGG
TGGCGATGGCGAGGCTGGCCGCCACGAGAGTGGTTACGAAGCCGGGAATC
CCACTTACCGGCATGAACGTCGGCATCGCTCACCCGTCCCCGCGTACGTG
CGAGAGTTGGGGCAGGGTGCTGAGTGCAGCGGGGGCGGAGAATGTGCGTA
GGATATCTGGGCCGCTGCTCGAGGAGGGCGACGAAGCGAAGAACGGGAAG
TGGGCGGAGGGTAGGGGTGGTATGAAGGCGCGGACCCGGCGGACGATGTC
CGTTGACAACGTTCGCCCGTCGAGACAACACCGAAAAGGGGAGGAGGGAG
AGAAGCGCAGTGGCGTGAACGGTGTTGAGAGCAAGGGTTTGTCCGCGTTA
GCAGCGGCGCTCGAGGGTTTGGACTGTGTTGTCTGTGACTATCCCAGTGC
GTGGCGTGACAGCCACGAGCGCGCGGTCCCCAGCGGCAGCGGGAGCGGTG
GCATAAGAGTTCCGGTGGAAAGAATGGGATCCGATTTGTGGTCACCATCG
CGAAGGAGACCGGAATGGGAGCGCGAGCTTCGGAGTGGTGGCCGCGGAGC
TTTGACCCTCGGGCTAACGCGATCGCAATCGTGTCACCGACCCGGGGAGT
ACAGGCAAGAAGGTGCGATGCCGAAGCTCGGGTGCCTTGTCACAGCCGCG
CGTCGTGAGAGCGTGCGCCTTGTGTCTTTGTCCTGGGCCATCAACTGCGC
CATTCGCGGCACGCGGATAAAGCAGCAGTCGCGTGCGGAGTACCTTTCCC
CTTTCCTCGACGAGGCCCTCGGCGGGAGAGAGCCGCGAATCACCGCGGCG
GTCCGCGCGTCCATGTCAACCCCCGCCGGAGCTGCGTCTGGCAAGCCTCG
TCCTCCGACGGTTTTGGCGAGCATCAGGATGTCGCGCGTGCACGCATTCG
TGGCCCGGACGGGTGAGCGCTACGAGGTCGACGATCACGTGCGCTACGCC
GCGCATGGGGCCAGTGGTACAGAACAAAGCCCTAGCGCCGACGGCAGCGG
CTCGGGCCGATCTGCTCGAGGCCGGGAAAATCCGCGGACCGGCCAAGATC
GGTCAGATGTACGCGTAGGGCGCGTCGTCTCTCTCGAGCTGGCGCCGAGC
GGCCGGGTGTTCATTGCTATCGAGCCCCTA
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Coding sequence (CDS) from alignment at H-elongata_contig114842:3..1232+

>mRNA_H-elongata_contig114842.1185.1 ID=mRNA_H-elongata_contig114842.1185.1|Name=mRNA_H-elongata_contig114842.1185.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2208bp|location=Sequence derived from alignment at H-elongata_contig114842:3..1232+ (Himanthalia elongata Himel1 dioecious)
CCCGCCGGTCAGTATCTCTTGCCCGGAGCTCGCGAAACCTCCCGAAGGCG
CCAGCTCGTGGGCAGTGACGGTAGAACAGCGCGAATAGGGGGAGGATCGG
TGGCGATGGCGAGGCTGGCCGCCACGAGAGTGGTTACGAAGCCGGGAATC
CCACTTACCGGCATGAACGTCGGCATCGCTCACCCGTCCCCGCGTACGTG
CGAGAGTTGGGGCAGGGTGCTGAGTGCAGCGGGGGCGGAGAATGTGCGTA
GGATATCTGGGCCGCTGCTCGAGGAGGGCGACGAAGCGAAGAACGGGAAG
TGGGCGGAGGGTAGGGGTGGTATGAAGGCGCGGACCCGGCGGACGATGTC
CGTTGACAACGTTCGCCCGTCGAGACAACACCGAAAAGGGGAGGAGGGAG
AGAAGCGCAGTGGCGTGAACGGTGTTGAGAGCAAGGGTTTGTCCGCGTTA
GCAGCGGCGCTCGAGGGTTTGGACTGTGTTGTCTGTGACTATCCCAGTGC
GTGGCGTGACAGCCACGAGCGCGCGGTCCCCAGCGGCAGCGGGAGCGGTG
GCATAAGACCCGCCGGTCAGTATCTCTTGCCCGGAGCTCGCGAAACCTCC
CGAAGGCGCCAGCTCGTGGGCAGTGACGGTAGAACAGCGCGAATAGGGGG
AGGATCGGTGGCGATGGCGAGGCTGGCCGCCACGAGAGTGGTTACGAAGC
CGGGAATCCCACTTACCGGCATGAACGTCGGCATCGCTCACCCGTCCCCG
CGTACGTGCGAGAGTTGGGGCAGGGTGCTGAGTGCAGCGGGGGCGGAGAA
TGTGCGTAGGATATCTGGGCCGCTGCTCGAGGAGGGCGACGAAGCGAAGA
ACGGGAAGTGGGCGGAGGGTAGGGGTGGTATGAAGGCGCGGACCCGGCGG
ACGATGTCCGTTGACAACGTTCGCCCGTCGAGACAACACCGAAAAGGGGA
GGAGGGAGAGAAGCGCAGTGGCGTGAACGGTGTTGAGAGCAAGGGTTTGT
CCGCGTTAGCAGCGGCGCTCGAGGGTTTGGACTGTGTTGTCTGTGACTAT
CCCAGTGCGTGGCGTGACAGCCACGAGCGCGCGGTCCCCAGCGGCAGCGG
GAGCGGTGGCATAAGACGCGAGCTTCGGAGTGGTGGCCGCGGAGCTTTGA
CCCTCGGGCTAACGCGATCGCAATCGTGTCACCGACCCGGGGAGTACAGG
CAAGAAGGTGCGATGCCGAAGCTCGGGTGCCTTGTCACAGCCGCGCGTCG
TGAGAGCGTGCGCCTTGTGTCTTTGTCCTGGGCCATCAACTGCGCCATTC
GCGGCACGCGGATAAAGCAGCAGTCGCGTGCGGAGTACCTTTCCCCTTTC
CTCGACGAGGCCCTCGGCGGGAGAGAGCCGCGAATCACCGCGGCGGTCCG
CGCGTCCATCGCGAGCTTCGGAGTGGTGGCCGCGGAGCTTTGACCCTCGG
GCTAACGCGATCGCAATCGTGTCACCGACCCGGGGAGTACAGGCAAGAAG
GTGCGATGCCGAAGCTCGGGTGCCTTGTCACAGCCGCGCGTCGTGAGAGC
GTGCGCCTTGTGTCTTTGTCCTGGGCCATCAACTGCGCCATTCGCGGCAC
GCGGATAAAGCAGCAGTCGCGTGCGGAGTACCTTTCCCCTTTCCTCGACG
AGGCCCTCGGCGGGAGAGAGCCGCGAATCACCGCGGCGGTCCGCGCGTCC
ATGATGTCGCGCGTGCACGCATTCGTGGCCCGGACGGGTGAGCGCTACGA
GGTCGACGATCACGTGCGCTACGCCGCGCATGGGGCCAGTGGTACAGAAC
AAAGCCCTAGCGCCGACGGCAGCGGCTCGGGCCGATCTGCTCGAGGCCGG
GAAAATCCGCGGACCGGCCAAGATCGGTCAGATGTACGCGTAGGGCGCGT
CGTCTCTCTCGAGCTGGCGCCGAGCGGCCGGGTGTTCATTGCTATCGAGC
CCCTAGATGTCGCGCGTGCACGCATTCGTGGCCCGGACGGGTGAGCGCTA
CGAGGTCGACGATCACGTGCGCTACGCCGCGCATGGGGCCAGTGGTACAG
AACAAAGCCCTAGCGCCGACGGCAGCGGCTCGGGCCGATCTGCTCGAGGC
CGGGAAAATCCGCGGACCGGCCAAGATCGGTCAGATGTACGCGTAGGGCG
CGTCGTCTCTCTCGAGCTGGCGCCGAGCGGCCGGGTGTTCATTGCTATCG
AGCCCCTA
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