mRNA_H-elongata_contig114840.1184.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114840.1184.1
Unique NamemRNA_H-elongata_contig114840.1184.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.970e-14
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 KRGCKSTCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKL 279
            KR   S  IK+  G +LRD   I  RW  WF +LLN KSP ++    D +++ P   PL   P+L EV+EAV ++ N KAVG+D++  EL+KL
Sbjct:   52 KRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKL 144          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E)

HSP 1 Score: 69.3 bits (168), Expect = 9.920e-12
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   16 STCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
            S  IK+ +G LL  K  +L RW E F  LLNV   A +   L  + +LP+   LV  P+L+EV EA+   +N KAVGVDN+ GELLK G
Sbjct:  452 SVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDRLA-DFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELLKYG 539          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A6P8H386_ACTTE (uncharacterized protein LOC116287377 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H386_ACTTE)

HSP 1 Score: 62.4 bits (150), Expect = 1.800e-10
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   13 KSTCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPA--LNASILDGIE---QLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLK 276
            +ST ++N +G  L  K  +   W E F+E+ N + PA  + +   +G E    + E A  V EPT+ EVKEAV KL+NGKA+G+DN+  ELLK
Sbjct:   18 QSTAVENKNGNFLSMKSEVQATWMEHFKEVPNREQPANPITSEEENGFEFSAVMEEIA--VNEPTIGEVKEAVKKLKNGKALGIDNITAELLK 108          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A818VPA9_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A818VPA9_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 7.050e-9
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   25 IKNASGVLLRDKPSILLRWKEWFQELLNVKS-------PALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
            I+N  G LL +   ++LRW+E+F +LLNV S         ++  I+   EQ+ +  P    P+L EV +A+ +++N KA GVDN+  +LLK G
Sbjct:  363 IQNKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPHIFQQISVPIISTTEQMRQDKP----PSLSEVHDAIKQMKNRKAPGVDNISADLLKAG 451          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A8M1KV33_CLUHA (zinc finger protein 883-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KV33_CLUHA)

HSP 1 Score: 60.5 bits (145), Expect = 1.260e-8
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   19 TCIKNASGV-LLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
            T +K A G+ +L+D+ S+L RW E F  LLN  S A + +ILD + +LP    L   PT  EV  AV  L+N K+ G+DN+  ELLK G
Sbjct:   41 TPLKTADGLRVLKDQSSVLERWAEHFNTLLNRDSEA-DHTILDQLPELPPIDILNQPPTFLEVLSAVRSLKNNKSPGMDNIPAELLKQG 128          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A336M488_CULSO (CSON002588 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336M488_CULSO)

HSP 1 Score: 60.5 bits (145), Expect = 1.280e-8
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   25 IKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLK 276
            +K+ +GVLL +    L RW+E FQE+LN++   +    +  +  LP      + PT +E+ +A+  L+NGKA G+D++  E+LK
Sbjct:  432 VKDKNGVLLTNVEDQLKRWREHFQEVLNLRRDGIEVPQIRAVRTLPIRT---SPPTKKEITDAIKSLKNGKAAGIDSITAEVLK 512          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A8K0NUE5_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NUE5_LADFU)

HSP 1 Score: 59.3 bits (142), Expect = 2.090e-8
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   25 IKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLK 276
            IK+ASGV++R+   +  RWKE+F +LLN ++P L     DG E        V + +  EVK A+ K++NGKAVG D +  E+ K
Sbjct:  118 IKDASGVIIREDGDVRKRWKEYFHKLLNEENPRLRNEEGDGNELA------VQDMSRVEVKAALKKVKNGKAVGADQIPVEIRK 195          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A817QYR2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817QYR2_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 3.060e-8
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   25 IKNASGVLLRDKPSILLRWKEWFQELLNVKS---PALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
            I+N  G LL +   ++LRW+E+F +LLNV S   P +   IL  I    E       P+L EV +A+ +++N KA GVDN+  +LLK G
Sbjct:  239 IQNKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPHIFQQILVPIISTTEQMRQDKPPSLSEVHDAIKQMKNRKAPGVDNISVDLLKAG 327          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A817NW72_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NW72_9BILA)

HSP 1 Score: 59.3 bits (142), Expect = 3.270e-8
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   25 IKNASGVLLRDKPSILLRWKEWFQELLNVKS---PALNASILDGIEQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
            I+N  G LL +   ++LRW+E+F +LLNV S   P +   IL  I    E       P+L EV +A+ +++N KA GVDN+  +LLK G
Sbjct:  239 IQNKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPHIFQQILVPIISTTEQMRQDKPPSLSEVHDAIKQMKNRKAPGVDNISVDLLKAG 327          
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Match: A0A5J4N3A9_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N3A9_9TREM)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-7
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   25 IKNASGVLLRDKPSILLRWKEWFQELLNV---KSPALNASILDGIEQL-PEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG 282
            +KN  G LL  +  +L RW+E+F+ELLNV   +   ++     GI     E  P+V+   + EV+EAVGK++ GKA G+D +  E+LK G
Sbjct:  290 VKNRRGELLNGELEVLGRWREYFEELLNVDEDREAVISCIGQGGITSCRSEEEPVVS---VGEVREAVGKMKGGKAAGIDGIKIEMLKAG 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114840.1184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVM9_9PHAE4.970e-1444.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001F135E6E9.920e-1247.19uncharacterized protein LOC124542503 n=1 Tax=Vanes... [more]
A0A6P8H386_ACTTE1.800e-1043.01uncharacterized protein LOC116287377 n=1 Tax=Actin... [more]
A0A818VPA9_9BILA7.050e-937.63Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A8M1KV33_CLUHA1.260e-844.94zinc finger protein 883-like n=1 Tax=Clupea hareng... [more]
A0A336M488_CULSO1.280e-835.71CSON002588 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A8K0NUE5_LADFU2.090e-841.67Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A817QYR2_9BILA3.060e-840.45Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A817NW72_9BILA3.270e-840.45Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A5J4N3A9_9TREM1.120e-740.00Uncharacterized protein n=1 Tax=Paragonimus wester... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114840contigH-elongata_contig114840:1794..2075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog13735.ENSPSIP00000000041
KEGG koko:K04257
KEGG Pathwayko04740,map04740
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,487I3@7711,4962T@7742,4CKCN@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.3848405-CDS-H-elongata_contig114840:1793..20751622929664.3848405-CDS-H-elongata_contig114840:1793..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114840 1794..2075 +
1691679110.8653386-CDS-H-elongata_contig114840:1793..20751691679110.8653386-CDS-H-elongata_contig114840:1793..2075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114840 1794..2075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114840.1184.1prot_H-elongata_contig114840.1184.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114840 1794..2075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114840.1184.1

>prot_H-elongata_contig114840.1184.1 ID=prot_H-elongata_contig114840.1184.1|Name=mRNA_H-elongata_contig114840.1184.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
KRGCKSTCIKNASGVLLRDKPSILLRWKEWFQELLNVKSPALNASILDGI
EQLPEHAPLVAEPTLEEVKEAVGKLENGKAVGVDNVCGELLKLG
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mRNA from alignment at H-elongata_contig114840:1794..2075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114840.1184.1 ID=mRNA_H-elongata_contig114840.1184.1|Name=mRNA_H-elongata_contig114840.1184.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig114840:1794..2075+ (Himanthalia elongata Himel1 dioecious)
AAGAGGGGATGTAAATCAACCTGCATCAAGAACGCTTCTGGCGTGTTGTT GCGGGACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGC TCCTGAACGTGAAATCGCCGGCTCTCAATGCCTCTATCCTCGACGGCATC GAGCAGTTGCCCGAACACGCCCCGCTTGTGGCCGAGCCCACGTTGGAGGA AGTGAAGGAGGCAGTGGGCAAGCTGGAGAACGGCAAGGCTGTCGGCGTCG ACAATGTCTGCGGTGAACTGCTGAAGCTCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig114840:1794..2075+

>mRNA_H-elongata_contig114840.1184.1 ID=mRNA_H-elongata_contig114840.1184.1|Name=mRNA_H-elongata_contig114840.1184.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig114840:1794..2075+ (Himanthalia elongata Himel1 dioecious)
AAGAGGGGATGTAAATCAACCTGCATCAAGAACGCTTCTGGCGTGTTGTT
GCGGGACAAGCCGTCTATCCTACTTCGGTGGAAAGAGTGGTTCCAGGAGC
TCCTGAACGTGAAATCGCCGGCTCTCAATGCCTCTATCCTCGACGGCATC
GAGCAGTTGCCCGAACACGCCCCGCTTGTGGCCGAGCCCACGTTGGAGGA
AGTGAAGGAGGCAGTGGGCAAGCTGGAGAACGGCAAGGCTGTCGGCGTCG
ACAATGTCTGCGGTGAACTGCTGAAGCTCGGTAAGAGGGGATGTAAATCA
ACCTGCATCAAGAACGCTTCTGGCGTGTTGTTGCGGGACAAGCCGTCTAT
CCTACTTCGGTGGAAAGAGTGGTTCCAGGAGCTCCTGAACGTGAAATCGC
CGGCTCTCAATGCCTCTATCCTCGACGGCATCGAGCAGTTGCCCGAACAC
GCCCCGCTTGTGGCCGAGCCCACGTTGGAGGAAGTGAAGGAGGCAGTGGG
CAAGCTGGAGAACGGCAAGGCTGTCGGCGTCGACAATGTCTGCGGTGAAC
TGCTGAAGCTCGGT
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