mRNA_H-elongata_contig11481.1181.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11481.1181.1
Unique NamemRNA_H-elongata_contig11481.1181.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: D8LG87_ECTSI (Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG87_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 8.460e-71
Identity = 106/124 (85.48%), Postives = 114/124 (91.94%), Query Frame = 1 
Query:    1 EFDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIE+DL+IDPFTPWTQSAQYSPNGLEVISPIFQNMPRLP+P+GTFLYP+FLRLPW DRLTALG+LA  + W      WRK
Sbjct:   46 DFDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEDDLKIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRK 169
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: A0A6H5KSI6_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI6_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.250e-70
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 1 
Query:    1 EFDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIE+DL+IDPFTPWTQSAQYSPNGLEVISPIFQNMPRLP+PLGTFLYP+FLRLPW DRLTALG+LA  + W      WRK
Sbjct:  110 DFDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEDDLKIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPSPLGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRK 233
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: I2CR86_NANGC (Amine oxidase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR86_NANGC)

HSP 1 Score: 174 bits (442), Expect = 1.460e-53
Identity = 82/124 (66.13%), Postives = 96/124 (77.42%), Query Frame = 1 
Query:    1 EFDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            E++VTLLE G SVGGLVAGW T GG+ +EAGVHGFWY YRNIF L+E +LR+ PFT WT SAQYSPNGLEV SPIFQ++PRLPTPLGTFLY  F RLP  DR +A  +L+  L +   D  WR+
Sbjct:   37 EYEVTLLEAGPSVGGLVAGWKTKGGKSIEAGVHGFWYCYRNIFHLVENELRLSPFTDWTPSAQYSPNGLEVTSPIFQDLPRLPTPLGTFLYTRFRRLPLADRASAFALLSSLLDFDNSDDAWRR 160
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: UPI001683E8BE (FAD-dependent oxidoreductase n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001683E8BE)

HSP 1 Score: 169 bits (429), Expect = 4.600e-48
Identity = 84/123 (68.29%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW T GGR VEAG+HGFWYPY+NIF L+EE L +DPFTPWT+SAQYSP GLEV SPIFQN PRLPTPLGTFLY  F RLP  DRL+AL +L   + +   D  WR+
Sbjct:   31 YDVTLLEAGAYPGGLVAGWKTAGGRSVEAGIHGFWYPYKNIFSLVEE-LGLDPFTPWTRSAQYSPAGLEVESPIFQNEPRLPTPLGTFLYTQFKRLPLVDRLSALPLLYAVVDFDNSDEAWRR 152
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: UPI0019DDC8A4 (FAD-dependent oxidoreductase n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019DDC8A4)

HSP 1 Score: 169 bits (428), Expect = 6.340e-48
Identity = 83/123 (67.48%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW T GGR VEAG+HGFWYPYRNIF L++E L + PFTPWT+S+QYSP GLEV SPIFQ+ PRLPTPLGTFLYPNF RLP  DRL+AL +L   + +   D  WR+
Sbjct:   30 YDVTLLEAGPYPGGLVAGWKTTGGRSVEAGIHGFWYPYRNIFALMDE-LGLQPFTPWTRSSQYSPAGLEVESPIFQDQPRLPTPLGTFLYPNFRRLPLIDRLSALPLLYAVVDFDNSDEAWRR 151
[Close]
BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: UPI00168492CE (FAD-dependent oxidoreductase n=1 Tax=Coleofasciculus sp. FACHB-712 TaxID=2692789 RepID=UPI00168492CE)

HSP 1 Score: 166 bits (420), Expect = 1.060e-47
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW T GGR VEAG+HGFWYPYRNIF L++E L + PFTPWT+S+QYSP GLEV SPIFQ++PRLPTPLGTFLY  F RLP +DRL+AL +L   + +   D  WR+
Sbjct:   31 YDVTLLEAGPYPGGLVAGWKTAGGRSVEAGIHGFWYPYRNIFSLVKE-LGLSPFTPWTRSSQYSPAGLEVESPIFQDLPRLPTPLGTFLYTQFKRLPLSDRLSALPLLYAVIDFDNSDEAWRR 152
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: A0A2T1CAM5_9CYAN (Amine oxidase (Fragment) n=1 Tax=filamentous cyanobacterium Phorm 46 TaxID=2107705 RepID=A0A2T1CAM5_9CYAN)

HSP 1 Score: 164 bits (415), Expect = 2.520e-47
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW T GGR VEAG+HGFWYPY+NIF L++E L + PFTPWT+S QYSP GLEV SPIFQ+ PRLPTPLGTFLY  F RLP  DRL+AL +L   L +   D  WR+
Sbjct:   31 YDVTLLEAGPQPGGLVAGWKTAGGRSVEAGIHGFWYPYKNIFSLVKE-LELAPFTPWTRSCQYSPAGLEVESPIFQDEPRLPTPLGTFLYTKFKRLPLVDRLSALPLLYAVLDFDNSDEAWRR 152
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BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: UPI00034A7878 (FAD-dependent oxidoreductase n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI00034A7878)

HSP 1 Score: 167 bits (422), Expect = 4.800e-47
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW T GGR VEAGVHGFWYPYRNIF L+++ L I PFTPWT+S+QYSP GLEV SPIFQ++PRLPTPLGTF YP F RLP +DRL+AL +L   + +   D  WR+
Sbjct:   31 YDVTLLEAGAYPGGLVAGWKTAGGRSVEAGVHGFWYPYRNIFDLVKQ-LGISPFTPWTKSSQYSPAGLEVESPIFQDLPRLPTPLGTFFYPQFKRLPLSDRLSALPLLYAVVDFDNSDDAWRR 152
[Close]
BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: UPI000369AABA (FAD-dependent oxidoreductase n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI000369AABA)

HSP 1 Score: 167 bits (422), Expect = 4.800e-47
Identity = 83/123 (67.48%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW T GGR VEAG+HGFWYPYRNIF L+ E L ++PFTPWT+SAQYSP GLEV SPIFQ  PRLPTPLGTFLYP F RLP  DRL+AL +L     +   D  WR+
Sbjct:   31 YDVTLLEAGSYPGGLVAGWKTAGGRSVEAGIHGFWYPYRNIFSLVRE-LGLNPFTPWTRSAQYSPAGLEVESPIFQEEPRLPTPLGTFLYPQFKRLPLIDRLSALPLLYTLADFDNSDEAWRR 152
[Close]
BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Match: A0A8J6WTF2_9CYAN (FAD-dependent oxidoreductase n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6WTF2_9CYAN)

HSP 1 Score: 166 bits (421), Expect = 6.610e-47
Identity = 80/123 (65.04%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    4 FDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDLRIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWTDRLTALGVLARCLFWCRRD--WRK 366
            +DVTLLE G   GGLVAGW TPGGR +EAG+HGFWYPYRNIF L+++ L + PFTPWT+S+QYSP GLEV SPIFQ++PRLPTPLGTFLY  F RLP  DRL+AL +L   + +   D  WR+
Sbjct:   29 YDVTLLEAGAYPGGLVAGWKTPGGRSIEAGIHGFWYPYRNIFSLVDQ-LGLKPFTPWTRSSQYSPVGLEVESPIFQDLPRLPTPLGTFLYTQFKRLPLRDRLSALPLLYALIDFDNSDAAWRR 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11481.1181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG87_ECTSI8.460e-7185.48Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KSI6_9PHAE2.250e-7086.29Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
I2CR86_NANGC1.460e-5366.13Amine oxidase (Fragment) n=1 Tax=Nannochloropsis g... [more]
UPI001683E8BE4.600e-4868.29FAD-dependent oxidoreductase n=2 Tax=unclassified ... [more]
UPI0019DDC8A46.340e-4867.48FAD-dependent oxidoreductase n=1 Tax=Synechococcal... [more]
UPI00168492CE1.060e-4765.85FAD-dependent oxidoreductase n=1 Tax=Coleofascicul... [more]
A0A2T1CAM5_9CYAN2.520e-4765.85Amine oxidase (Fragment) n=1 Tax=filamentous cyano... [more]
UPI00034A78784.800e-4766.67FAD-dependent oxidoreductase n=1 Tax=Pseudanabaena... [more]
UPI000369AABA4.800e-4767.48FAD-dependent oxidoreductase n=1 Tax=Oscillatoria ... [more]
A0A8J6WTF2_9CYAN6.610e-4765.04FAD-dependent oxidoreductase n=3 Tax=unclassified ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11481contigH-elongata_contig11481:2381..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue1.4e-57
Seed eggNOG ortholog2880.D8LG87
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11481.1181.1prot_H-elongata_contig11481.1181.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11481 2381..3169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.1365464-CDS-H-elongata_contig11481:2380..24871622929664.1365464-CDS-H-elongata_contig11481:2380..2487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11481 2381..2487 +
1691679110.7876465-CDS-H-elongata_contig11481:2380..24871691679110.7876465-CDS-H-elongata_contig11481:2380..2487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11481 2381..2487 +
1622929664.1706858-CDS-H-elongata_contig11481:2677..27801622929664.1706858-CDS-H-elongata_contig11481:2677..2780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11481 2678..2780 +
1691679110.7994103-CDS-H-elongata_contig11481:2677..27801691679110.7994103-CDS-H-elongata_contig11481:2677..2780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11481 2678..2780 +
1622929664.1926615-CDS-H-elongata_contig11481:3013..31691622929664.1926615-CDS-H-elongata_contig11481:3013..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11481 3014..3169 +
1691679110.806707-CDS-H-elongata_contig11481:3013..31691691679110.806707-CDS-H-elongata_contig11481:3013..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11481 3014..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11481.1181.1

>prot_H-elongata_contig11481.1181.1 ID=prot_H-elongata_contig11481.1181.1|Name=mRNA_H-elongata_contig11481.1181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
EFDVTLLEGGKSVGGLVAGWLTPGGRPVEAGVHGFWYPYRNIFRLIEEDL
RIDPFTPWTQSAQYSPNGLEVISPIFQNMPRLPTPLGTFLYPNFLRLPWT
DRLTALGVLARCLFWCRRDWRK
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mRNA from alignment at H-elongata_contig11481:2381..3169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11481.1181.1 ID=mRNA_H-elongata_contig11481.1181.1|Name=mRNA_H-elongata_contig11481.1181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig11481:2381..3169+ (Himanthalia elongata Himel1 dioecious)
GAATTCGACGTGACACTGCTCGAGGGAGGCAAGAGTGTAGGAGGATTGGT
GGCGGGATGGCTTACTCCAGGCGGGAGACCGGTCGAGGCAGGCGTACATG
GCTTCTGGTGCGATTAAAAAGGGATACACCGCGACAACACCCGTGTTCGC
TTTCACGCAAAGTGGTTCCTGCAGTCCAGAGCACGGATTCGACGACACCC
GAAACTGTGTCAGCGCCCACGGGCGTTTATCGTACGCGACCGACCGCGTG
CTAAGTGTGTCGTGCTGACCGTGCCCTGCGCCGTTGCGATCGCACAGGTA
TCCCTACAGAAATATATTCCGCCTGATCGAGGAGGACCTCAGGATCGACC
CCTTCACGCCTTGGACACAGTCTGCGCAGTACAGCCCAAACGGCCTCGAG
GTCTGCGATATATATGATTCGTGTACCCTCCGCGGGTCTCGAATTCTGGC
GGCCACCCCTGTCTACCTTGCGACGTCGTCCATCAGACGGGCAAATCCAT
ACTGTAGATATTTGGCATCTTAATATCCCAGTGAGTCTATCTTAACCCAG
ACTTTGGCACGTAGACCCCCCCCGCTCCGCTCTATTCACCGACCGTTTCC
ATTGCTGTGAACTTCGATGTCTTCTTGATCCAGGTTATTTCTCCGATCTT
TCAGAACATGCCTCGGTTACCTACCCCGCTGGGCACGTTCCTCTACCCTA
ACTTCCTCAGACTGCCATGGACGGACAGGCTCACGGCCCTTGGAGTCCTG
GCAAGGTGCTTGTTCTGGTGCCGCCGCGACTGGCGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig11481:2381..3169+

>mRNA_H-elongata_contig11481.1181.1 ID=mRNA_H-elongata_contig11481.1181.1|Name=mRNA_H-elongata_contig11481.1181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig11481:2381..3169+ (Himanthalia elongata Himel1 dioecious)
GAATTCGACGTGACACTGCTCGAGGGAGGCAAGAGTGTAGGAGGATTGGT
GGCGGGATGGCTTACTCCAGGCGGGAGACCGGTCGAGGCAGGCGTACATG
GCTTCTGGAATTCGACGTGACACTGCTCGAGGGAGGCAAGAGTGTAGGAG
GATTGGTGGCGGGATGGCTTACTCCAGGCGGGAGACCGGTCGAGGCAGGC
GTACATGGCTTCTGGTATCCCTACAGAAATATATTCCGCCTGATCGAGGA
GGACCTCAGGATCGACCCCTTCACGCCTTGGACACAGTCTGCGCAGTACA
GCCCAAACGGCCTCGAGGTATCCCTACAGAAATATATTCCGCCTGATCGA
GGAGGACCTCAGGATCGACCCCTTCACGCCTTGGACACAGTCTGCGCAGT
ACAGCCCAAACGGCCTCGAGGTTATTTCTCCGATCTTTCAGAACATGCCT
CGGTTACCTACCCCGCTGGGCACGTTCCTCTACCCTAACTTCCTCAGACT
GCCATGGACGGACAGGCTCACGGCCCTTGGAGTCCTGGCAAGGTGCTTGT
TCTGGTGCCGCCGCGACTGGCGCAAGGTTATTTCTCCGATCTTTCAGAAC
ATGCCTCGGTTACCTACCCCGCTGGGCACGTTCCTCTACCCTAACTTCCT
CAGACTGCCATGGACGGACAGGCTCACGGCCCTTGGAGTCCTGGCAAGGT
GCTTGTTCTGGTGCCGCCGCGACTGGCGCAAG
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