mRNA_H-elongata_contig114797.1179.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI) HSP 1 Score: 383 bits (983), Expect = 4.920e-122 Identity = 184/205 (89.76%), Postives = 195/205 (95.12%), Query Frame = 1
Query: 1 GSRLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
GSRLLYVRDRYLRVHELQ+GRDHPLVS+RRPGQSQGASLGQGPR LQHN FNPAESNVLVTYD DGGCY+LLTF SM+GA+NG DPNE RRGSCLA VF+ARNRFAVLDKNRQILIKNFSNEVTKK TPPHP+TDG+HFGGTSGRLLLRCEDR+TLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHT+VIA+KQLDQL
Sbjct: 333 GSRLLYVRDRYLRVHELQTGRDHPLVSMRRPGQSQGASLGQGPRMLQHNAFNPAESNVLVTYDSDGGCYELLTFGSMDGASNGVGADPNELRRGSCLAAVFLARNRFAVLDKNRQILIKNFSNEVTKKLTPPHPNTDGLHFGGTSGRLLLRCEDRITLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTVVIASKQLDQL 537
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: A0A6H5KXQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXQ0_9PHAE) HSP 1 Score: 327 bits (837), Expect = 1.960e-103 Identity = 156/178 (87.64%), Postives = 166/178 (93.26%), Query Frame = 1
Query: 82 LRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
+RRPGQSQGASLGQGPR LQHN FNPAE NVLVTYD DGGCY+LLTF SM+GA+NG DPNE RRGSCLA VF+ARNRFAVLDKN QILIKNFSNEVTKK TPPHP+TDG+HFGGTSGRLLLRCEDR+TLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHT+VIA+KQLDQL
Sbjct: 1 MRRPGQSQGASLGQGPRMLQHNAFNPAECNVLVTYDSDGGCYELLTFGSMDGASNGVGADPNELRRGSCLAAVFLARNRFAVLDKNHQILIKNFSNEVTKKLTPPHPNTDGLHFGGTSGRLLLRCEDRITLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTVVIASKQLDQL 178
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: A0A835Z8J6_9STRA (Coatomer subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J6_9STRA) HSP 1 Score: 281 bits (718), Expect = 2.140e-84 Identity = 137/202 (67.82%), Postives = 167/202 (82.67%), Query Frame = 1
Query: 10 LLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
L YV+DRYLR+HE Q+GRD P+VSLRR GQ Q ++LGQ PRSLQ+N +NPAESNVL+ D++GG Y+LL+F++ GS +P + RRGS LA VF+ARNRFAVLDKNRQILIKNF NEVTKK +PPHPSTDGM++ G +GRLLLRCEDR+TLY+QQSR+VLAEL VPRVKY FW+ D S VAL +KH IVIA+K L+Q+
Sbjct: 335 LFYVKDRYLRMHEYQTGRDAPVVSLRRAGQGQASALGQAPRSLQYNPYNPAESNVLIFSDVEGGSYELLSFSAEMPGGTGSG-EPQDVRRGSGLAAVFLARNRFAVLDKNRQILIKNFQNEVTKKVSPPHPSTDGMYYAGGAGRLLLRCEDRVTLYDQQSRRVLAELLVPRVKYVFWSQDSSKVALMTKHAIVIASKHLEQM 535
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: A0A7S2V4C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4C4_9STRA) HSP 1 Score: 256 bits (653), Expect = 5.650e-77 Identity = 132/216 (61.11%), Postives = 162/216 (75.00%), Query Frame = 1
Query: 4 SRLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGAS---LGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSN---------TDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
+RL YV+DRYLRV E +GRD P+VSLRR GQS +S LG GPRSLQ+N+FNPAESN+L+ D +GG Y+LLTF+ +P + RRG LA VFIARNRFAVLDKNRQ+L+KNF NEVTKK +PP+P+TD ++FGGTSGRLLLR EDR++L+EQQSR++L E+ VPRVKY FWN D S+VAL SKH I+IA KQ +QL
Sbjct: 334 NRLFYVKDRYLRVFEFATGRDMPVVSLRRVGQSGSSSTPGLGGGPRSLQYNSFNPAESNILLQLDSEGGSYELLTFSLSSXXXXXXXXXXXXXXXAAEPQDVRRGVGLAAVFIARNRFAVLDKNRQVLVKNFQNEVTKKVSPPNPATDSLYFGGTSGRLLLRGEDRVSLFEQQSRRLLGEVPVPRVKYVFWNQDQSMVALVSKHAILIANKQCEQL 549
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: A0A7S2RES0_9STRA (Coatomer subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES0_9STRA) HSP 1 Score: 255 bits (652), Expect = 3.330e-75 Identity = 128/204 (62.75%), Postives = 159/204 (77.94%), Query Frame = 1
Query: 1 GSRLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNP-AESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLD 609
G R+ YV+D+YLR+HE SGRD P+VSLRR G S +++G PRSL +N+F+P AES+VLV D+DGG Y+LLTF+ A G+ ++P+ RG+CL+ VFIARNRFAVLDKNRQIL+KNF N+VTKK PP+PSTDGM F G SGR+LL EDRMTL++ SRKVLAELQVPRVKY W++DCS VA SKH IVI +QL+
Sbjct: 334 GPRMFYVKDKYLRMHEFGSGRDVPVVSLRRGGHSGSSAIGSAPRSLSYNSFSPPAESSVLVCSDVDGGSYELLTFD----AEGGNPSEPSGTHRGNCLSAVFIARNRFAVLDKNRQILLKNFQNQVTKKLAPPNPSTDGMFFAGASGRVLLSSEDRMTLFDTHSRKVLAELQVPRVKYVVWSNDCSHVAFLSKHGIVITDRQLE 533
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: W7TRK7_9STRA (Coatomer subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK7_9STRA) HSP 1 Score: 251 bits (642), Expect = 8.140e-74 Identity = 127/203 (62.56%), Postives = 156/203 (76.85%), Query Frame = 1
Query: 4 SRLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQ 612
S + YV+D+YLR+HE +SGRD PLVSLRR G SQ LG R+LQ+N FNPAE+NVLV D DGG Y+L+TF S E G D + RRG LA VFIARNRFAVLDK+RQ+LIKNF NEVTKK PP+P+TD + F G SGR++LR ED++TL+EQQSR+V+AELQ PR+KY FWN D SLVAL KH++V+AT+ L+Q
Sbjct: 335 SHMFYVKDKYLRLHEFESGRDLPLVSLRRAGVSQSNGLGNVIRTLQYNVFNPAENNVLVLSDTDGGSYELITF-STEPNGQG---DAQDVRRGPGLAAVFIARNRFAVLDKSRQVLIKNFQNEVTKKMAPPNPNTDSLLFAGVSGRVILRSEDKVTLFEQQSRRVIAELQAPRIKYIFWNKDGSLVALMGKHSLVVATRNLEQ 533
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: A0A7S3UV91_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV91_HETAK) HSP 1 Score: 245 bits (626), Expect = 1.940e-73 Identity = 122/203 (60.10%), Postives = 151/203 (74.38%), Query Frame = 1
Query: 7 RLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
RL YV+DRYLR+ E +GRD P+VSLRR GQ Q + LG PR L +N FNP E+NVL+ D+DGG Y+L+TF A+ + +P + RRG+ LA F+ARNRFAVLDKNRQILIKNF NEVTKK PPHP TD + F G SGR+LL+ EDR+ L+EQQSR+VL E+QVPRVKY +W+ D + VAL SKH IV+A + L QL
Sbjct: 218 RLFYVKDRYLRMFEFATGRDAPVVSLRRAGQGQLSGLGGTPRGLSYNQFNPREANVLLQLDVDGGTYELVTFALDPSASQAA--EPQDLRRGAGLAAAFVARNRFAVLDKNRQILIKNFQNEVTKKVAPPHPQTDSLFFAGVSGRVLLKTEDRVVLFEQQSRRVLGEVQVPRVKYVYWSPDGARVALVSKHAIVLADRDLGQL 418
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: F0YHJ1_AURAN (Coatomer subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHJ1_AURAN) HSP 1 Score: 236 bits (603), Expect = 1.510e-68 Identity = 120/203 (59.11%), Postives = 149/203 (73.40%), Query Frame = 1
Query: 7 RLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
R+ YV++RYLRVHE + RD P +SLRR G SQG LG GPRSL++N NPAE N+L+ D DGG ++LL F+ E S T+ + +RG L+ VF+ARNRFA+LDKNRQI+IK+ SNE K PP+PSTD M F GTSGRLLLR +DR+ L+E QSR+VLAELQV R+KY WN DCS VAL SKH I IA++ L+QL
Sbjct: 326 RMFYVKERYLRVHEFGTSRDVPTLSLRRAGHSQGG-LGSGPRSLEYNAMNPAECNLLLFSDHDGGTFELLAFS--EDTTTSSQTEHTDSKRGLALSAVFLARNRFAILDKNRQIIIKDLSNEKRKSVAPPNPSTDCMFFAGTSGRLLLRSDDRIMLFEPQSRRVLAELQVARIKYVIWNQDCSHVALISKHGITIASRDLEQL 525
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: A0A7R9UCR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCR5_9STRA) HSP 1 Score: 232 bits (591), Expect = 1.290e-67 Identity = 113/204 (55.39%), Postives = 148/204 (72.55%), Query Frame = 1
Query: 1 GSRLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQ 612
G R+ YV+DRYLR H+ + RD +VSL R G SQ +G PR+L +N FNPAESNVLV D +GG YDLLT+ + + + G T+ ++ RRGS L+ VF+ARNRFAVLDK+RQI++KN NE K+ PP S D + FGG SGR+L+R EDR+TL+EQ SR+VL ELQVPR+KY WN DC+ VAL SKH++V+ + L+Q
Sbjct: 332 GGRMTYVKDRYLRQHDFGTSRDAAIVSLWRAGSSQTPGIGNSPRTLLYNHFNPAESNVLVLSDQEGGTYDLLTYPNGD-SFGGQGTEQSDTRRGSALSAVFLARNRFAVLDKSRQIIVKNLQNEEVKRLAPPQASADFLFFGGVSGRVLVRSEDRVTLFEQASRRVLGELQVPRIKYVVWNKDCTQVALLSKHSVVLCNRDLEQ 534
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Match: F0YGR3_AURAN (Coatomer subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR3_AURAN) HSP 1 Score: 230 bits (587), Expect = 2.280e-66 Identity = 119/203 (58.62%), Postives = 146/203 (71.92%), Query Frame = 1
Query: 7 RLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTFNPAESNVLVTYDIDGGCYDLLTFNSMEGAANGSNTDPNEQRRGSCLAVVFIARNRFAVLDKNRQILIKNFSNEVTKKCTPPHPSTDGMHFGGTSGRLLLRCEDRMTLYEQQSRKVLAELQVPRVKYTFWNHDCSLVALASKHTIVIATKQLDQL 615
RL YV+DRYLRV+E RD P +SLRR G G+S+G PRSL N FN +E N+L+ + DGG Y+L+TF A G +T E +RG +A VFIARNR AVLDKNRQI+IK+F+NE K PP+PSTD M F GTSGRLLLR +DR+TL+E QSR+VLAELQ PRVKY WN DC+ VAL SKH I IA++ ++QL
Sbjct: 336 RLFYVKDRYLRVYEYSPSRDVPALSLRRAGS--GSSIGGNPRSLDLNVFNASEDNILMFSESDGGTYELMTFQGESSATPGEST---EIKRGQGVAAVFIARNRIAVLDKNRQIIIKDFANEKRKSLAPPNPSTDRMFFAGTSGRLLLRSDDRITLFEPQSRRVLAELQSPRVKYVLWNKDCTYVALVSKHGITIASRDMEQL 533 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114797.1179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114797.1179.1 >prot_H-elongata_contig114797.1179.1 ID=prot_H-elongata_contig114797.1179.1|Name=mRNA_H-elongata_contig114797.1179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp GSRLLYVRDRYLRVHELQSGRDHPLVSLRRPGQSQGASLGQGPRSLQHNTback to top mRNA from alignment at H-elongata_contig114797:404..2031- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114797.1179.1 ID=mRNA_H-elongata_contig114797.1179.1|Name=mRNA_H-elongata_contig114797.1179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1628bp|location=Sequence derived from alignment at H-elongata_contig114797:404..2031- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114797:404..2031- >mRNA_H-elongata_contig114797.1179.1 ID=mRNA_H-elongata_contig114797.1179.1|Name=mRNA_H-elongata_contig114797.1179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig114797:404..2031- (Himanthalia elongata Himel1 dioecious)back to top |