mRNA_H-elongata_contig114785.1178.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114785.1178.1
Unique NamemRNA_H-elongata_contig114785.1178.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A6H5L4K3_9PHAE (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4K3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 3.360e-33
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            L+SAET V+S+YYRL+SEYYK VGPPD+FYRSALMFLAYTP+E IP  ERYTLATDISLAALTG+GVFNFGEV++
Sbjct:  143 LESAETAVHSAYYRLSSEYYKTVGPPDAFYRSALMFLAYTPLEGIPQAERYTLATDISLAALTGEGVFNFGEVLA 217
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A4D9CV45_9STRA (PCI domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV45_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.240e-26
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            L  A+ +VYS+YYR ASEY+K VGPP++FY++ALM+LAYTP+E++  +E+ TLA DISLAALTGDGVFNFGEV+S
Sbjct:  144 LTGADAMVYSAYYRAASEYHKMVGPPEAFYKNALMYLAYTPVESLTAEEQSTLAVDISLAALTGDGVFNFGEVLS 218
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A7S1UCB7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCB7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.780e-26
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:   13 ETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            +T V S YY+L+S YYK VGPP+SFY+ ALMFL YTPME++P +ERYTLATD+SLAA+TG+G++NFGEV++
Sbjct:  156 DTTVPSIYYQLSSTYYKLVGPPESFYKDALMFLVYTPMESVPQEERYTLATDLSLAAITGNGIYNFGEVLA 226
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A7R9YAW4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.550e-24
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            L + +T V S +YRL+S YYK VGPP+SFYR AL+FL +TP E +P +E+YTLATD+SLAA+TG G++NFGEV++
Sbjct:  152 LSADDTTVPSIFYRLSSTYYKLVGPPESFYRDALLFLVFTPTEELPHEEQYTLATDLSLAAITGSGIYNFGEVLA 226
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: H3HCI8_PHYRM (PCI domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCI8_PHYRM)

HSP 1 Score: 102 bits (253), Expect = 1.630e-23
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            L  AE VV++SYYR+A +YY AVGP D FY++ALMFLAYT  + + PDER+ LA +IS+AALTGDGVFNFGEV++
Sbjct:  561 LVGAEPVVHASYYRVACDYYGAVGPADKFYKNALMFLAYTQYDEMRPDERFDLAVNISIAALTGDGVFNFGEVLA 635
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A7S2IIN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IIN6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.380e-23
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    4 QSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVV 222
            +S   VV+S+YY  +  Y KAVGPP+++Y+ A+ FL+YTP+ ++PP  +YTLATD+SLAALTGDGVFNFGEVV
Sbjct:  180 ESDTAVVHSAYYETSMTYRKAVGPPEAYYKEAMQFLSYTPLPSLPPPRQYTLATDLSLAALTGDGVFNFGEVV 252
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A836CML5_9STRA (26S proteasome subunit like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.980e-23
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   10 AETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            A+T V+S+++ LA EYYK VGPP++F+RSALM+LAYTP+E++  + +  LATDISLAA+TGDGV+NFGEVV+
Sbjct:  147 ADTSVHSAHHLLACEYYKGVGPPEAFFRSALMYLAYTPLESMAAERQQQLATDISLAAITGDGVYNFGEVVA 218
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: A0A7S0CIL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIL2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.430e-23
Identity = 45/73 (61.64%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    7 SAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            S   VV+S++Y  ++ Y K VGPP++FY+ ALMFL YTP++++  +ERYTLATD+SLAALTG+GVFNFGEVV+
Sbjct:  167 SGSAVVHSAFYEASTAYRKRVGPPEAFYQEALMFLNYTPVDSMTVEERYTLATDLSLAALTGEGVFNFGEVVT 239
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BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: G4YXL1_PHYSP (PCI domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=G4YXL1_PHYSP)

HSP 1 Score: 99.0 bits (245), Expect = 7.140e-23
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            L  AE VV++SYYR+A +YY A+GP D FY++ALMFLAYT  + + P+ER+ LA +IS+AALTGDGVFNFGEV++
Sbjct:  147 LVGAEPVVHASYYRVACDYYGALGPADKFYKNALMFLAYTQYDEMRPNERFDLAVNISIAALTGDGVFNFGEVLA 221
[Close]
BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Match: M4B5F7_HYAAE (PCI domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B5F7_HYAAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.140e-23
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDERYTLATDISLAALTGDGVFNFGEVVS 225
            L  AE VV+++YYR+A +YY A+GP D FY++ALMFLAYT  + + P+ER+ LA +IS+AALTGDGVFNFGEV++
Sbjct:  147 LVGAEPVVHAAYYRVACDYYSALGPADKFYKNALMFLAYTQYDDMRPEERFDLAVNISIAALTGDGVFNFGEVLA 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114785.1178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4K3_9PHAE3.360e-3381.33PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CV45_9STRA1.240e-2668.00PCI domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S1UCB7_9STRA3.780e-2667.61Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YAW4_9STRA7.550e-2461.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
H3HCI8_PHYRM1.630e-2365.33PCI domain-containing protein n=1 Tax=Phytophthora... [more]
A0A7S2IIN6_9STRA2.380e-2361.64Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A836CML5_9STRA4.980e-2363.8926S proteasome subunit like protein n=1 Tax=Tribon... [more]
A0A7S0CIL2_9STRA6.430e-2361.64Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
G4YXL1_PHYSP7.140e-2362.67PCI domain-containing protein n=18 Tax=Peronospora... [more]
M4B5F7_HYAAE7.140e-2361.33PCI domain-containing protein n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114785contigH-elongata_contig114785:165..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.1e-28
Seed eggNOG ortholog2880.D7FUW8
Preferred namePSMD13
KEGG koko:K03039
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000280,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007049,GO:0007088,GO:0007127,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061982,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.proteasome assembly
EggNOG OGsKOG2908@1,KOG2908@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.89292-CDS-H-elongata_contig114785:164..3951622929663.89292-CDS-H-elongata_contig114785:164..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114785 165..395 +
1691679110.7317667-CDS-H-elongata_contig114785:164..3951691679110.7317667-CDS-H-elongata_contig114785:164..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114785 165..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114785.1178.1prot_H-elongata_contig114785.1178.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114785 165..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114785.1178.1

>prot_H-elongata_contig114785.1178.1 ID=prot_H-elongata_contig114785.1178.1|Name=mRNA_H-elongata_contig114785.1178.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
LQSAETVVYSSYYRLASEYYKAVGPPDSFYRSALMFLAYTPMETIPPDER
YTLATDISLAALTGDGVFNFGEVVSE*
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mRNA from alignment at H-elongata_contig114785:165..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114785.1178.1 ID=mRNA_H-elongata_contig114785.1178.1|Name=mRNA_H-elongata_contig114785.1178.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig114785:165..395+ (Himanthalia elongata Himel1 dioecious)
CTTCAGTCGGCGGAAACGGTGGTCTACTCTTCCTACTACCGTCTAGCCTC
GGAGTACTACAAGGCCGTGGGTCCACCGGATTCCTTCTACCGGAGCGCCC
TCATGTTCCTGGCCTACACCCCGATGGAAACCATCCCGCCAGACGAACGT
TACACGCTGGCGACCGACATCAGCCTGGCGGCGCTCACTGGGGACGGTGT
TTTCAACTTCGGAGAGGTGGTGAGTGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig114785:165..395+

>mRNA_H-elongata_contig114785.1178.1 ID=mRNA_H-elongata_contig114785.1178.1|Name=mRNA_H-elongata_contig114785.1178.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig114785:165..395+ (Himanthalia elongata Himel1 dioecious)
CTTCAGTCGGCGGAAACGGTGGTCTACTCTTCCTACTACCGTCTAGCCTC
GGAGTACTACAAGGCCGTGGGTCCACCGGATTCCTTCTACCGGAGCGCCC
TCATGTTCCTGGCCTACACCCCGATGGAAACCATCCCGCCAGACGAACGT
TACACGCTGGCGACCGACATCAGCCTGGCGGCGCTCACTGGGGACGGTGT
TTTCAACTTCGGAGAGGTGGTGAGTGAATGACTTCAGTCGGCGGAAACGG
TGGTCTACTCTTCCTACTACCGTCTAGCCTCGGAGTACTACAAGGCCGTG
GGTCCACCGGATTCCTTCTACCGGAGCGCCCTCATGTTCCTGGCCTACAC
CCCGATGGAAACCATCCCGCCAGACGAACGTTACACGCTGGCGACCGACA
TCAGCCTGGCGGCGCTCACTGGGGACGGTGTTTTCAACTTCGGAGAGGTG
GTGAGTGAATGA
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