mRNA_H-elongata_contig11474.1173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11474.1173.1
Unique NamemRNA_H-elongata_contig11474.1173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11474.1173.1 vs. uniprot
Match: D7G1C5_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C5_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.970e-51
Identity = 83/102 (81.37%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    1 RTPIEISLGDMRLLRETVIMKWKSINRSYQGSLLGDTLLHRVCREGYLEALKFMLNPNSKSNFETEKLDPNIVNKRKRTPLMLCFTSPQFTTITKNFGLMKD 306
            + P++ISLGDMRLLRETVIMKWK INRSYQG LLG+T+LHRVCREGYL ALKFML+PNSKS FETE +DPNI+NKRKRT LMLCFTSP FT ITKNFGL +D
Sbjct:   83 KIPLQISLGDMRLLRETVIMKWKDINRSYQGPLLGETVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNILNKRKRTALMLCFTSPHFTEITKNFGLEQD 184
[Close]
BLAST of mRNA_H-elongata_contig11474.1173.1 vs. uniprot
Match: A0A6H5K2B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B1_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 7.370e-49
Identity = 81/102 (79.41%), Postives = 90/102 (88.24%), Query Frame = 1 
Query:    1 RTPIEISLGDMRLLRETVIMKWKSINRSYQGSLLGDTLLHRVCREGYLEALKFMLNPNSKSNFETEKLDPNIVNKRKRTPLMLCFTSPQFTTITKNFGLMKD 306
            + P++ISLGDMRLLRETVIMKWK INRSYQG LLG+T+LHRVCREGYL ALKFML+PNSKS FETE +DPNI NKRKRT LMLCFTSP FT I K+FGL +D
Sbjct:   83 KIPLQISLGDMRLLRETVIMKWKDINRSYQGPLLGETVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIPNKRKRTALMLCFTSPHFTEIAKHFGLEQD 184
[Close]
BLAST of mRNA_H-elongata_contig11474.1173.1 vs. uniprot
Match: F0YPL7_AURAN (JmjC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPL7_AURAN)

HSP 1 Score: 85.9 bits (211), Expect = 2.150e-17
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    1 RTPIEISLGDMRLLRETVIMKWKSINRSYQGSLLGDTLLHRVCREGYLEALKFMLNPNSKSNFETEKLDPNIVNKRKRTPLMLCFTSPQFTTITKNFGLMKD 306
            +T   I+LG+ R LRE +I  +  +N+ Y G+   DTLLH VCREGYL  ++FM++P + S F+T ++D N  N + RTPL + FT PQ T   +  G+  D
Sbjct:  390 KTAESIALGNFRELREIIIGHFAQVNKRY-GAWDNDTLLHIVCREGYLRMVEFMVDPKNVSQFDTTEIDFNAENNKWRTPLHVVFTPPQETYCARKIGVHDD 490
[Close]
BLAST of mRNA_H-elongata_contig11474.1173.1 vs. uniprot
Match: F0Y8C8_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8C8_AURAN)

HSP 1 Score: 85.9 bits (211), Expect = 2.200e-17
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    1 RTPIEISLGDMRLLRETVIMKWKSINRSYQGSLLGDTLLHRVCREGYLEALKFMLNPNSKSNFETEKLDPNIVNKRKRTPLMLCFTSPQFTTITKNFGLMKD 306
            +T   I+LG+ R LRE +I  +  +N+ Y G+   DTLLH VCREGYL  ++FM++P + S F+T ++D N  N + RTPL + FT PQ T   +  G+  D
Sbjct: 1170 KTAESIALGNFRELREIIIGHFAQVNKRY-GAWDNDTLLHIVCREGYLRMVEFMVDPKNVSQFDTTEIDFNAENNKWRTPLHVVFTPPQETYCARKIGVHDD 1270
[Close]
BLAST of mRNA_H-elongata_contig11474.1173.1 vs. uniprot
Match: A0A7S3M4K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4K0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-10
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   25 GDMRLLRETVIMKWKSINRSYQGSLLGDTLLHRVCREGYLEALKFMLNPNSKSNFETEK 201
            G+M+ LR  V++ +K+INR Y    LG+TLLH VC+EGY   L+FM NP ++S+ +T +
Sbjct:   84 GNMKELRNQVVVYFKNINRKYTDHHLGNTLLHMVCQEGYYSMLQFMFNPANRSDLDTNE 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11474.1173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G1C5_ECTSI2.970e-5181.37Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K2B1_9PHAE7.370e-4979.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YPL7_AURAN2.150e-1743.14JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
F0Y8C8_AURAN2.200e-1743.14JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S3M4K0_9STRA1.390e-1047.46Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11474contigH-elongata_contig11474:6858..7602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2e-37
Seed eggNOG ortholog2880.D7G1C5
EggNOG free text desc.temperature-gated cation channel activity
EggNOG OGsCOG0666@1,KOG0510@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-00_005590.1
Exons2
Model size306
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11474.1173.1prot_H-elongata_contig11474.1173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11474 6888..7602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.2479804-UTR-H-elongata_contig11474:6857..68871622929663.2479804-UTR-H-elongata_contig11474:6857..6887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11474 6858..6887 +
1691679110.4845226-UTR-H-elongata_contig11474:6857..68871691679110.4845226-UTR-H-elongata_contig11474:6857..6887Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11474 6858..6887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.2692516-CDS-H-elongata_contig11474:6887..69941622929663.2692516-CDS-H-elongata_contig11474:6887..6994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11474 6888..6994 +
1691679110.4964778-CDS-H-elongata_contig11474:6887..69941691679110.4964778-CDS-H-elongata_contig11474:6887..6994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11474 6888..6994 +
1622929663.2859895-CDS-H-elongata_contig11474:7433..76021622929663.2859895-CDS-H-elongata_contig11474:7433..7602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11474 7434..7602 +
1691679110.5077412-CDS-H-elongata_contig11474:7433..76021691679110.5077412-CDS-H-elongata_contig11474:7433..7602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11474 7434..7602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11474.1173.1

>prot_H-elongata_contig11474.1173.1 ID=prot_H-elongata_contig11474.1173.1|Name=mRNA_H-elongata_contig11474.1173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MRLLRETVIMKWKSINRSYQGSLLGDTLLHRVCREGYLEALKFMLNPNSK
SNFETEKLDPNIVNKRKRTPLMLCFTSPQFTTITKNFGLMKD
back to top

mRNA from alignment at H-elongata_contig11474:6858..7602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11474.1173.1 ID=mRNA_H-elongata_contig11474.1173.1|Name=mRNA_H-elongata_contig11474.1173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=745bp|location=Sequence derived from alignment at H-elongata_contig11474:6858..7602+ (Himanthalia elongata Himel1 dioecious)
AGAACGCCCATAGAGATCTCCCTCGGAGATATGCGGCTTCTTCGAGAAAC
CGTCATAATGAAGTGGAAGAGCATCAATCGCAGCTATCAAGGGTCTTTGC
TCGGGGATACTTTGCTGCACCGGGTGTGCCGAGAAGGGTGGGGAGGACTA
TATTGCTGGCGACCCCCCCCCCCCATTTGTTTATGAAAAATATTCCTAAC
CGTTATCAAAATGTATGCCCATTCGCTACATATAGACAATGCTGTGTCTA
ACCCTTCCTTACCACTACACCCAATTCACTCCCTAGACTCTGGTTTGGCG
TCCCCATATGATGAAAAATCACATATTATGATTTTGTGCTTAGATGTAGT
TAAAATGTCCACATTCGAACCTGACGATAGTTGGTCCTGGACTAAACCTC
TCATGGTGCTAAGAAGGCGTGGATGTTCGAAGGGTTCGAATGCGTTCATA
TGTTTTTTAATAATAATGTACGAAGTATATTATTTCTATTGCTGCTGCTG
CTGCTTGTCTTCGCGTTGGACATTTGTCAGTTCCCTTGAACAGCGTCTTT
GCCGTCTCTAATCGCTTCTTATGTAGGTATCTCGAGGCTCTGAAATTCAT
GCTAAACCCGAATTCAAAGTCAAATTTCGAAACGGAGAAGCTTGACCCAA
ATATTGTCAACAAGCGAAAACGGACACCGCTGATGCTATGCTTCACAAGC
CCGCAATTCACTACGATCACAAAGAACTTTGGACTCATGAAGGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11474:6858..7602+

>mRNA_H-elongata_contig11474.1173.1 ID=mRNA_H-elongata_contig11474.1173.1|Name=mRNA_H-elongata_contig11474.1173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig11474:6858..7602+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCTTCTTCGAGAAACCGTCATAATGAAGTGGAAGAGCATCAATCG
CAGCTATCAAGGGTCTTTGCTCGGGGATACTTTGCTGCACCGGGTGTGCC
GAGAAGGATGCGGCTTCTTCGAGAAACCGTCATAATGAAGTGGAAGAGCA
TCAATCGCAGCTATCAAGGGTCTTTGCTCGGGGATACTTTGCTGCACCGG
GTGTGCCGAGAAGGGTATCTCGAGGCTCTGAAATTCATGCTAAACCCGAA
TTCAAAGTCAAATTTCGAAACGGAGAAGCTTGACCCAAATATTGTCAACA
AGCGAAAACGGACACCGCTGATGCTATGCTTCACAAGCCCGCAATTCACT
ACGATCACAAAGAACTTTGGACTCATGAAGGACGTATCTCGAGGCTCTGA
AATTCATGCTAAACCCGAATTCAAAGTCAAATTTCGAAACGGAGAAGCTT
GACCCAAATATTGTCAACAAGCGAAAACGGACACCGCTGATGCTATGCTT
CACAAGCCCGCAATTCACTACGATCACAAAGAACTTTGGACTCATGAAGG
AC
back to top