mRNA_H-elongata_contig114649.1166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114649.1166.1
Unique NamemRNA_H-elongata_contig114649.1166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 59.7 bits (143), Expect = 1.630e-9
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIAAQDEGEWRKTVEQGAE 198
            M  +RLPK LM+GE+L G   VGGQ+K +  CL   L   GI  D W + AQD   WR  + +GA+
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAK 66          
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 59.3 bits (142), Expect = 2.060e-8
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = 1
Query:    1 MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIAAQDEGEWRKTVEQGAEYFMKNWIAAEIVRTGLR 249
            MD  RLPK L++G+++ G+ R GGQ + +   L   L    +N   W   A D   WR+TV+ GA  +  N IAA  V+   R
Sbjct:   12 MDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREAR 94          
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: A0A6H5K956_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K956_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.000e-8
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGIN----ADQWTIAAQDEGEWRKTVEQGAEYFMK 210
            M+  RLPK ++ G + GG G  GGQE+EW+  L +DL  F +     A +W  +A+D   W   VE GA + M+
Sbjct:  112 MEDNRLPKHVLLGAMAGGVGYRGGQEREWVSRLGDDLVAFNMGDEKEAGKWNESAKDPEVWYNKVEDGAAWLMR 185          
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE)

HSP 1 Score: 57.8 bits (138), Expect = 7.940e-8
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 1
Query:    1 MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIAAQDEGEWRKTVEQGAEYFMKNWIAAEIVRTGLR 249
            M  TRLPK L++ E++ G   VGGQ+K +   L   L  F I+   W  AAQ+   WR  +  GA  + K  IA  + +   R
Sbjct:  305 MPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGATLYEKTRIAEAVRKRASR 387          
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: A0A7M3QNM1_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QNM1_SPIER)

HSP 1 Score: 52.4 bits (124), Expect = 5.560e-6
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIAAQDEGEWRKTVEQGAEYFMKNWIAAEIVRTGLR 249
            MD   LPK L++G+++ G+ R GGQ   +   L   L    IN   W   A+D  +WR TV+ GA  +  N IAA  V+   R
Sbjct:  200 MDDEWLPKRLVYGDVVMGSRRQGGQIHRYRDTLKSYLKRLKINQANWEELARDLLKWRTTVKMGAAIYEANRIAAAKVKREAR 282          
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D)

HSP 1 Score: 50.1 bits (118), Expect = 3.950e-5
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 1
Query:    1 MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIAAQDEGEWRKTVEQGAE 198
            M  +RLPK LM+GE+L G   V GQ+K +  CL   L   GI  D     AQD   WR  + +GA+
Sbjct:  530 MADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWRCKLTKGAK 595          
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Match: A0A3M7QKL5_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QKL5_BRAPC)

HSP 1 Score: 48.5 bits (114), Expect = 8.850e-5
Identity = 20/54 (37.04%), Postives = 32/54 (59.26%), Query Frame = 1
Query:   10 TRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIAAQDEGEW 171
            TRLPK ++FG++L G   +G  E+EW  CL +D    GI   +W   +++  +W
Sbjct:  139 TRLPKIVLFGDVLSGKRGMGRSEREWTDCLKKDCERAGIVWTKWVNESKNREKW 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114649.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00165228C01.630e-945.45uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
A0A654HMC6_9CEST2.060e-837.35Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A6H5K956_9PHAE5.000e-839.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4ZXC7_BRABE7.940e-836.14protocadherin Fat 4-like n=1 Tax=Branchiostoma bel... [more]
A0A7M3QNM1_SPIER5.560e-637.35Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
UPI00035A230D3.950e-542.42uncharacterized protein LOC101847595 n=1 Tax=Aplys... [more]
A0A3M7QKL5_BRAPC8.850e-537.04Uncharacterized protein n=1 Tax=Brachionus plicati... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114649contigH-elongata_contig114649:1826..2074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue5.7e-07
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.6837494-CDS-H-elongata_contig114649:1825..20741622929662.6837494-CDS-H-elongata_contig114649:1825..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114649 1826..2074 -
1691679110.2790143-CDS-H-elongata_contig114649:1825..20741691679110.2790143-CDS-H-elongata_contig114649:1825..2074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114649 1826..2074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114649.1166.1prot_H-elongata_contig114649.1166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114649 1826..2074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114649.1166.1

>prot_H-elongata_contig114649.1166.1 ID=prot_H-elongata_contig114649.1166.1|Name=mRNA_H-elongata_contig114649.1166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MDVTRLPKFLMFGEILGGTGRVGGQEKEWMGCLLEDLNFFGINADQWTIA
AQDEGEWRKTVEQGAEYFMKNWIAAEIVRTGLR
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mRNA from alignment at H-elongata_contig114649:1826..2074-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114649.1166.1 ID=mRNA_H-elongata_contig114649.1166.1|Name=mRNA_H-elongata_contig114649.1166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig114649:1826..2074- (Himanthalia elongata Himel1 dioecious)
ATGGACGTCACGAGACTGCCGAAGTTCCTAATGTTCGGAGAAATCCTGGG GGGCACGGGTCGCGTGGGAGGGCAGGAAAAAGAGTGGATGGGATGTCTTC TGGAAGACCTCAACTTTTTCGGTATCAACGCTGACCAGTGGACGATTGCA GCCCAGGACGAGGGGGAGTGGCGCAAGACAGTGGAACAAGGGGCGGAGTA TTTCATGAAGAATTGGATCGCTGCAGAGATAGTCAGGACTGGACTACGG
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Coding sequence (CDS) from alignment at H-elongata_contig114649:1826..2074-

>mRNA_H-elongata_contig114649.1166.1 ID=mRNA_H-elongata_contig114649.1166.1|Name=mRNA_H-elongata_contig114649.1166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig114649:1826..2074- (Himanthalia elongata Himel1 dioecious)
ATGGACGTCACGAGACTGCCGAAGTTCCTAATGTTCGGAGAAATCCTGGG
GGGCACGGGTCGCGTGGGAGGGCAGGAAAAAGAGTGGATGGGATGTCTTC
TGGAAGACCTCAACTTTTTCGGTATCAACGCTGACCAGTGGACGATTGCA
GCCCAGGACGAGGGGGAGTGGCGCAAGACAGTGGAACAAGGGGCGGAGTA
TTTCATGAAGAATTGGATCGCTGCAGAGATAGTCAGGACTGGACTACGGA
TGGACGTCACGAGACTGCCGAAGTTCCTAATGTTCGGAGAAATCCTGGGG
GGCACGGGTCGCGTGGGAGGGCAGGAAAAAGAGTGGATGGGATGTCTTCT
GGAAGACCTCAACTTTTTCGGTATCAACGCTGACCAGTGGACGATTGCAG
CCCAGGACGAGGGGGAGTGGCGCAAGACAGTGGAACAAGGGGCGGAGTAT
TTCATGAAGAATTGGATCGCTGCAGAGATAGTCAGGACTGGACTACGG
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