mRNA_H-elongata_contig114619.1163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114619.1163.1
Unique NamemRNA_H-elongata_contig114619.1163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: D7G0N8_ECTSI (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N8_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.740e-29
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 2 
Query:    5 AWAEGKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGAAKLEKARSLGVEMVSEDEWCRRIGLPP 241
            AW EGKTVVFTG+L R+KRTE QE AR LGARVT SISR TD++VVGLNPG  KLEKAR LGVE+VSE+EW RRIGLPP
Sbjct: 1093 AWVEGKTVVFTGTLTRMKRTETQEAARELGARVTGSISRKTDMVVVGLNPGG-KLEKARELGVEVVSEEEWYRRIGLPP 1170
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: A0A2H6ASG5_9BACT (DNA ligase n=1 Tax=bacterium HR39 TaxID=2035434 RepID=A0A2H6ASG5_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 3.660e-17
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGAAKLEKARSLGVEMVSEDEWCRRIGL 235
            G+T+VFTG L R+ R E +E A  LGA+VT S+SR TD +V G NPG+ KL++AR LGV +V+EDEW R +GL
Sbjct:  650 GRTIVFTGELERMTREEAKELAERLGAKVTDSVSRRTDFVVAGRNPGS-KLQRARQLGVRVVTEDEWYRMVGL 721
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: UPI00193C1BD9 (NAD-dependent DNA ligase LigA n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00193C1BD9)

HSP 1 Score: 82.4 bits (202), Expect = 5.970e-16
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGAAKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVV TG L  + R E    A   GARVTSS+S+ T ++VVG NPGA K +KAR+LG+E V E E+ RR+G
Sbjct:  615 GKTVVITGELETMSREEATHAAEAAGARVTSSVSKSTSIVVVGANPGATKYDKARALGIETVDEQEFLRRLG 686
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: UPI000FAFDC18 (NAD-dependent DNA ligase LigA n=1 Tax=Salmonella enteritidis TaxID=149539 RepID=UPI000FAFDC18)

HSP 1 Score: 76.6 bits (187), Expect = 8.580e-16
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVVFTGSL R+ R E +  A  LGA+V+ S+S+ TD++V G  PGA +KL++A  LG+E++SED+W  R+G
Sbjct:   39 GKTVVFTGSLERMSRDEAKAMAEKLGAKVSGSVSKKTDLVVAG--PGAGSKLKQATDLGIEVISEDDWFARVG 109
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: A0A7W6IM67_9HYPH (DNA ligase n=4 Tax=Devosia TaxID=46913 RepID=A0A7W6IM67_9HYPH)

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-15
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVVFTGSL ++ RTE +  A  LGA+V  S+S  TD+L+ G  PGA +KL+KA  LGVE++SEDEW  R+G
Sbjct:  564 GKTVVFTGSLEKMTRTEAKAMAERLGAKVAGSVSGATDILIAG--PGAGSKLKKAEELGVEVISEDEWFERVG 634
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: A0A259KKZ4_9HYPH (BRCT domain-containing protein n=2 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A259KKZ4_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 2.150e-15
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVVFTG+L ++ R E +  A  LGA+V  S+S  TD+LV G  PGA +KLEKAR+LGV++++EDEW   +G
Sbjct:   92 GKTVVFTGALEKMTREEAKAMAERLGAKVAGSVSAKTDILVAG--PGAGSKLEKARALGVQVITEDEWFELVG 162
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BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: A0A7V3X5M8_9RHOB (NAD-dependent DNA ligase LigA n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7V3X5M8_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 3.150e-15
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVVFTGSL ++ R E +  A  LGA+V+ S+S+ TD++V G  PGA +K +KA SLGVEM+ ED W   IG
Sbjct:    8 GKTVVFTGSLEKMTRAEAKARAEALGAKVSGSVSKKTDLVVAG--PGAGSKAKKAESLGVEMIDEDGWLALIG 78
[Close]
BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: G4RFF7_PELHB (DNA ligase n=4 Tax=Hyphomicrobiales TaxID=356 RepID=G4RFF7_PELHB)

HSP 1 Score: 80.1 bits (196), Expect = 3.860e-15
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVVFTGSL R+ RTE +  A  LGA+V+ S+S  TD++V G  PGA +KL++A SLGVE++SEDEW  R G
Sbjct:  642 GKTVVFTGSLERMSRTEAKAMAERLGAKVSGSVSAKTDLVVAG--PGAGSKLKQAESLGVEVISEDEWFERTG 712
[Close]
BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: UPI001AD98740 (NAD-dependent DNA ligase LigA n=1 Tax=Aquabacter sp. L1I39 TaxID=2820278 RepID=UPI001AD98740)

HSP 1 Score: 80.1 bits (196), Expect = 3.910e-15
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRR 226
            GKTVVFTGSL R+ R E +E A  LGA+V  S+S  TD++V G  PGA +KLEKARSLGVE+++EDEW  R
Sbjct:  745 GKTVVFTGSLERMTREEAKEMAERLGAKVAGSVSAKTDLVVAG--PGAGSKLEKARSLGVEVITEDEWFAR 813
[Close]
BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Match: A0A258MUZ8_9HYPH (DNA ligase (NAD(+)) LigA (Fragment) n=1 Tax=Azorhizobium sp. 35-67-15 TaxID=1970320 RepID=A0A258MUZ8_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 6.170e-15
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 2 
Query:   17 GKTVVFTGSLRRVKRTEIQETARLLGARVTSSISRLTDVLVVGLNPGA-AKLEKARSLGVEMVSEDEWCRRIG 232
            GKTVVFTGSL R+ R E +  A  LGA+V  S+S  TD+LV G  PGA +KLEKAR+LGV++++EDEW   +G
Sbjct:  245 GKTVVFTGSLERMTREEAKAMAERLGAKVAGSVSAKTDILVAG--PGAGSKLEKARALGVQVITEDEWFDLVG 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114619.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0N8_ECTSI2.740e-2978.48DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus... [more]
A0A2H6ASG5_9BACT3.660e-1757.53DNA ligase n=1 Tax=bacterium HR39 TaxID=2035434 Re... [more]
UPI00193C1BD95.970e-1655.56NAD-dependent DNA ligase LigA n=1 Tax=Archangium v... [more]
UPI000FAFDC188.580e-1653.42NAD-dependent DNA ligase LigA n=1 Tax=Salmonella e... [more]
A0A7W6IM67_9HYPH1.500e-1557.53DNA ligase n=4 Tax=Devosia TaxID=46913 RepID=A0A7W... [more]
A0A259KKZ4_9HYPH2.150e-1554.79BRCT domain-containing protein n=2 Tax=unclassifie... [more]
A0A7V3X5M8_9RHOB3.150e-1554.79NAD-dependent DNA ligase LigA n=1 Tax=Rhodobactera... [more]
G4RFF7_PELHB3.860e-1558.90DNA ligase n=4 Tax=Hyphomicrobiales TaxID=356 RepI... [more]
UPI001AD987403.910e-1561.97NAD-dependent DNA ligase LigA n=1 Tax=Aquabacter s... [more]
A0A258MUZ8_9HYPH6.170e-1557.53DNA ligase (NAD(+)) LigA (Fragment) n=1 Tax=Azorhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114619contigH-elongata_contig114619:810..1959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114619.1163.1prot_H-elongata_contig114619.1163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114619 810..1887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.285081-CDS-H-elongata_contig114619:809..8601622929662.285081-CDS-H-elongata_contig114619:809..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114619 810..860 +
1691679110.100824-CDS-H-elongata_contig114619:809..8601691679110.100824-CDS-H-elongata_contig114619:809..860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114619 810..860 +
1622929662.2967787-CDS-H-elongata_contig114619:1656..18871622929662.2967787-CDS-H-elongata_contig114619:1656..1887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114619 1657..1887 +
1691679110.1101265-CDS-H-elongata_contig114619:1656..18871691679110.1101265-CDS-H-elongata_contig114619:1656..1887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114619 1657..1887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.3090482-UTR-H-elongata_contig114619:1887..19591622929662.3090482-UTR-H-elongata_contig114619:1887..1959Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114619 1888..1959 +
1691679110.1207266-UTR-H-elongata_contig114619:1887..19591691679110.1207266-UTR-H-elongata_contig114619:1887..1959Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114619 1888..1959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114619.1163.1

>prot_H-elongata_contig114619.1163.1 ID=prot_H-elongata_contig114619.1163.1|Name=mRNA_H-elongata_contig114619.1163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GGLGGREDGGVYGEPEASEAYRDTGDRASARGSRNEFDLAAHGRFSGGPQ
PGCCEARKGEEPRCRDGVGRRVVSEDRPPPIVVCLTAVGSSAR*
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mRNA from alignment at H-elongata_contig114619:810..1959+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114619.1163.1 ID=mRNA_H-elongata_contig114619.1163.1|Name=mRNA_H-elongata_contig114619.1163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1150bp|location=Sequence derived from alignment at H-elongata_contig114619:810..1959+ (Himanthalia elongata Himel1 dioecious)
GGAGGCCTGGGCGGAAGGGAAGACGGTGGTGTTTACGGGGAGCCTGAGGC
GGTGAGATAATCGGTCAAAGGTCAGAGGTATACTGTACCATGTATATATT
AATGGATAGAGGATATAGGTCTAAATAGATAGATCAAGCCCTAGATAATA
TATGGGTTTAAAAGCAAAGAGATCCGCTTTGCCAGGCCAGTATCGAAATA
GTTTATTTTGCTTTGCCTGCTTGTTTTTTGTTTTTGTCTCCCGTCTGTCT
CATTCGAATACTGTACTGTCTCATTCGAATACTGTACTGTCTCATTCGAA
TACTGTACTGTACAGTATAACGAGAGTAACGAGAGTGAGGAGGGTAGTGC
AATGAAAATAAAAAGTAATCTTTAATAAAAATACCAGTAGAATGATTGTG
TCATTATTATTCGCTCAACTTATAGATCATTCGTAGCTCGTTCTCCCCAA
GATAGAAACATCATTATGAATAGCAGCTAAGGGTAACAATAGCAATATAT
TATATTGTCCGGGGAGCCTCTTCCCCGAAAGGTTTTCGCGACGGTATGCA
GATCGTCGAAAGCGCCCCTCGTACCTAGTCAAGCACAGCTAAGTCATACG
TTAATTAATAGCGCACTCGTACGCTGTTGTTGTAGCATCAATACTTGCCT
TTTTTAATCCAAAGAAGTGTATTGCAGAGGAAAAAAAAATCCGCCCAAAT
GATATATTTTCTTGGCCTCTTTTTTTCTTCTTCAACTCTTTTATTTTTAT
TTTTTGTATTTTTTGCCGTTGGTTTGATTTGGGTTTGTATGTTGTGTTCG
GCTTTTGCGTTTCCCTTCCACTCACCGTGACGTCCGAGATATGACAGAGT
GAAGCGTACCGAGATACAGGAGACCGCGCGTCTGCTCGGGGCTCGCGTAA
CGAGTTCGATCTCGCGGCTCACGGACGTTTTAGTGGTGGGCCTCAACCCG
GGTGCTGCGAAGCTCGAAAAGGCGAGGAGCCTCGGTGTCGAGATGGTGTC
GGAAGACGAGTGGTGTCGGAGGATCGGCCTCCCCCCATAGTTGTGTGCTT
AACAGCGGTAGGTAGTTCTGCACGGTAGGTAGTTCTGCACGATGTATAAA
TGTGGCATGCGTTTTCGATTCGTCTCAAGTGTCTTATTGTTGTTGTTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig114619:810..1959+

>mRNA_H-elongata_contig114619.1163.1 ID=mRNA_H-elongata_contig114619.1163.1|Name=mRNA_H-elongata_contig114619.1163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig114619:810..1959+ (Himanthalia elongata Himel1 dioecious)
GGAGGCCTGGGCGGAAGGGAAGACGGTGGTGTTTACGGGGAGCCTGAGGC
GGGAGGCCTGGGCGGAAGGGAAGACGGTGGTGTTTACGGGGAGCCTGAGG
CGAGTGAAGCGTACCGAGATACAGGAGACCGCGCGTCTGCTCGGGGCTCG
CGTAACGAGTTCGATCTCGCGGCTCACGGACGTTTTAGTGGTGGGCCTCA
ACCCGGGTGCTGCGAAGCTCGAAAAGGCGAGGAGCCTCGGTGTCGAGATG
GTGTCGGAAGACGAGTGGTGTCGGAGGATCGGCCTCCCCCCATAGTTGTG
TGCTTAACAGCGGTAGGTAGTTCTGCACGGTAGAGTGAAGCGTACCGAGA
TACAGGAGACCGCGCGTCTGCTCGGGGCTCGCGTAACGAGTTCGATCTCG
CGGCTCACGGACGTTTTAGTGGTGGGCCTCAACCCGGGTGCTGCGAAGCT
CGAAAAGGCGAGGAGCCTCGGTGTCGAGATGGTGTCGGAAGACGAGTGGT
GTCGGAGGATCGGCCTCCCCCCATAGTTGTGTGCTTAACAGCGGTAGGTA
GTTCTGCACGGTAG
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