mRNA_H-elongata_contig114608.1162.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114608.1162.1
Unique NamemRNA_H-elongata_contig114608.1162.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114608.1162.1 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.350e-40
Identity = 67/80 (83.75%), Postives = 78/80 (97.50%), Query Frame = 2 
Query:    5 RCMYTSQKTKKRKVWSDGAVKCCPKRQRVSLYRWSEVLGVTDKLLGEIYLSVPEYDAFVTRGEPELEMEMYLVSLDGVIE 244
            RCMYT+QKTKKRK WSDGAVKCCPKRQRVSLYRWSE LGVT+KLLGE+YL+VP+Y+AF+T+GEPELEME+Y+VSLDGVI+
Sbjct:  144 RCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ 223
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BLAST of mRNA_H-elongata_contig114608.1162.1 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.430e-35
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 2 
Query:    5 RCMYTSQKTKKRKVWSDGAVKCCPKRQRVSLYRWSEVLGVTDKLLGEIYLSVPEYDAFVTRGEPELEMEMYLVSLDG 235
            RCMYT+QKTKKRK WSDGAVKCCPKRQRVSLYRWSE LGVT+KLLGE+YL+VP+Y+AF+T+GEPELEME+     DG
Sbjct:   88 RCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELLRRGDDG 164
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BLAST of mRNA_H-elongata_contig114608.1162.1 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.370e-28
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:    5 RCMYTSQKTKKRKVWSDGAVKCCPKRQRVSLYRWSEVLGVTDKLLGEIYLSVPEYDAFVTRGEPELEMEMYLVSLDGVIEQCQLGNSSQNSGTSSSNGIVGGSNGRKRKLLKPFKPPTR 361
            RC++TSQ TKKRK W DGAV+CC KR  V+LY+WS+ LGVT+K LGE +L+  E++AFVT+ EPELEME YLV+L+GV E     N     G S  +   GG+   K+  LK +K PT+
Sbjct:   12 RCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTENTYTSN-----GDSQQSSEGGGA--AKKPKLKGWKAPTK 123
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BLAST of mRNA_H-elongata_contig114608.1162.1 vs. uniprot
Match: A0A1Z5J761_FISSO (DUF2439 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J761_FISSO)

HSP 1 Score: 53.5 bits (127), Expect = 8.750e-6
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:    8 CMYTSQKTKKRKVWSDGAVKCCPKRQRVSLYRWSEVLGVTDKLLGEIYLSVPEYDAFVTRGEPELEMEMYLVSLDG 235
            C+YT QKT+KRKVW DG +    +  R +L+    V G  D LL E  +S  E  + V     +LEM+ +LV++DG
Sbjct:   51 CLYTHQKTQKRKVWQDGRLVL--QGSRAALHAAHIVPGSADPLLDECDVSPSEATSIVAGHITDLEMDKFLVTVDG 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114608.1162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZC9_9PHAE3.350e-4083.75RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI2.430e-3579.22RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A835YK32_9STRA1.370e-2852.94DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
A0A1Z5J761_FISSO8.750e-640.79DUF2439 domain-containing protein n=1 Tax=Fistulif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114608contigH-elongata_contig114608:1201..2071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.231762-CDS-H-elongata_contig114608:1200..14131622929662.231762-CDS-H-elongata_contig114608:1200..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114608 1201..1413 +
1691679110.083551-CDS-H-elongata_contig114608:1200..14131691679110.083551-CDS-H-elongata_contig114608:1200..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114608 1201..1413 +
1622929662.2467656-CDS-H-elongata_contig114608:1915..20711622929662.2467656-CDS-H-elongata_contig114608:1915..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114608 1916..2071 +
1691679110.0916066-CDS-H-elongata_contig114608:1915..20711691679110.0916066-CDS-H-elongata_contig114608:1915..2071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114608 1916..2071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114608.1162.1prot_H-elongata_contig114608.1162.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114608 1201..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114608.1162.1

>prot_H-elongata_contig114608.1162.1 ID=prot_H-elongata_contig114608.1162.1|Name=mRNA_H-elongata_contig114608.1162.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MKVHVYKSEDEEAESVVRRRRQVLPKAPEGVPLSMERGARSHRQTAGRNI
SLGARVRRLRHQGRAGTRNGNVPRLVGRRDRAMSARKQLSKFRHEQQQWY
RWWQQRSEAEASKALQAAHPTGT
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mRNA from alignment at H-elongata_contig114608:1201..2071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114608.1162.1 ID=mRNA_H-elongata_contig114608.1162.1|Name=mRNA_H-elongata_contig114608.1162.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=871bp|location=Sequence derived from alignment at H-elongata_contig114608:1201..2071+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGCATGTATACAAGTCAGAAGACGAAGAAGCGGAAAGTGTGGT
CCGACGGCGCCGTCAAGTGCTGCCCAAAGCGCCAGAGGGTGTCCCTCTAT
CGATGGAGCGAGGTGCTCGGAGTCACCGACAAACTGCTGGGCGAAATATA
TCTCTCGGTGCCCGAGTACGACGCCTTCGTCACCAGGGGAGAGCCGGAAC
TCGAAATGGAAATGTGAGTTTTTTGCGCGCGCCATGCTGAGGTGCTTTTG
CTATTGTGGCAAACACGGTGTCGCTTGATCCGCCGAGGTTCTCGATATTG
TATGTCTGGTATTAAACCCTCTGGAACTCGATATGTTTTTTTGTATACTA
AATTCAATATAAAACTTGAAACCCAGCTCCAAAAGGGTTTAAGTTTGGCT
GGACGGCATTCTTCTGCAGGTGATTCCCCGTCCGATTCGCGATTTTGTTT
GGGCAGGCATTAATGACAACTCTTCTTCCTTTTGTTTTTATTTTTTATTA
CCACACGAAGAAGTGTTTCGTCCAACCATCGTCATGAAAAAATAGTAAAA
AAGACCCTTCGCAATGAAATACACGCGCATGTTAACGTTTACTATACGAT
AATAGTAGAATAGTAGAAGCCCCTCTTACGGTAGGGCATTTGATGCTTGG
ACCATGGATGATACCCTCATGTCTCACGCCTGACATCTGATGGACATTTG
CGGTGTTCAAAACAGGTACCTCGTCTCGTTGGACGGCGTGATAGAGCAAT
GTCAGCTCGGAAACAGCTCTCAAAATTCCGGCACGAGCAGCAGCAATGGT
ATCGTTGGTGGCAGCAACGGTCGGAAGCGGAAGCTTCTAAAGCCCTTCAA
GCCGCCCACCCGACGGGCACC
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Coding sequence (CDS) from alignment at H-elongata_contig114608:1201..2071+

>mRNA_H-elongata_contig114608.1162.1 ID=mRNA_H-elongata_contig114608.1162.1|Name=mRNA_H-elongata_contig114608.1162.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig114608:1201..2071+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGCATGTATACAAGTCAGAAGACGAAGAAGCGGAAAGTGTGGT
CCGACGGCGCCGTCAAGTGCTGCCCAAAGCGCCAGAGGGTGTCCCTCTAT
CGATGGAGCGAGGTGCTCGGAGTCACCGACAAACTGCTGGGCGAAATATA
TCTCTCGGTGCCCGAGTACGACGCCTTCGTCACCAGGGGAGAGCCGGAAC
TCGAAATGGAAATATGAAGGTGCATGTATACAAGTCAGAAGACGAAGAAG
CGGAAAGTGTGGTCCGACGGCGCCGTCAAGTGCTGCCCAAAGCGCCAGAG
GGTGTCCCTCTATCGATGGAGCGAGGTGCTCGGAGTCACCGACAAACTGC
TGGGCGAAATATATCTCTCGGTGCCCGAGTACGACGCCTTCGTCACCAGG
GGAGAGCCGGAACTCGAAATGGAAATGTACCTCGTCTCGTTGGACGGCGT
GATAGAGCAATGTCAGCTCGGAAACAGCTCTCAAAATTCCGGCACGAGCA
GCAGCAATGGTATCGTTGGTGGCAGCAACGGTCGGAAGCGGAAGCTTCTA
AAGCCCTTCAAGCCGCCCACCCGACGGGCACCGTACCTCGTCTCGTTGGA
CGGCGTGATAGAGCAATGTCAGCTCGGAAACAGCTCTCAAAATTCCGGCA
CGAGCAGCAGCAATGGTATCGTTGGTGGCAGCAACGGTCGGAAGCGGAAG
CTTCTAAAGCCCTTCAAGCCGCCCACCCGACGGGCACC
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