mRNA_H-elongata_contig114553.1160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114553.1160.1
Unique NamemRNA_H-elongata_contig114553.1160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.750e-23
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISCQRESEAWINRLAER 168
            GVFEC NRGHR++RLPSSRVGDGVCDCCDGSDEP G C  SC+  SE W+  LA+R
Sbjct:  116 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKASCEEASEEWVAGLADR 171          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.910e-22
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISCQRESEAWINRLAER 168
            GVFEC NRGH ++RLPSSRVGDGVCDCCDGSDEP G+C  SC+  +E W+  LA+R
Sbjct:  126 GVFECANRGHWSVRLPSSRVGDGVCDCCDGSDEPAGVCKASCEEAAEEWVAGLADR 181          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A812L8W4_9DINO (Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L8W4_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 4.360e-15
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISCQRESEAWINRLAER 168
            G F CVN+G R + LPSSRVGDGVCDCCDGSDEP G C+ +C      W    AER
Sbjct:   38 GKFYCVNKGFRGVYLPSSRVGDGVCDCCDGSDEP-GTCADTCDEAGAEWRKAEAER 92          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A7R9U1R5_9VIRI (Glucosidase 2 subunit beta n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U1R5_9VIRI)

HSP 1 Score: 70.5 bits (171), Expect = 8.270e-13
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISCQRESEAWINRLAER 168
            G F C N G+ A  + ++RVGDGVCDCCDG+DEPKG+C  +C +E       LAER
Sbjct:   14 GAFRCENAGYEAALVSAARVGDGVCDCCDGTDEPKGMCGNTCDKE-------LAER 62          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A167HZH6_CALVF (Glucosidase 2 subunit beta n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167HZH6_CALVF)

HSP 1 Score: 65.9 bits (159), Expect = 3.700e-11
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCD--CCDGSDEPKGLCSISCQRESEAWINRLAE 165
            G+F CVN GH    +P+ RV DG+CD  CCDGSDEP G+C   C    EA+   L +
Sbjct:   85 GMFHCVNEGHLPKNIPNLRVNDGLCDSDCCDGSDEPAGVCPNRCAELGEAYRTTLEQ 141          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: D8LWM6_BLAHO (PRKCSH-like domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LWM6_BLAHO)

HSP 1 Score: 61.6 bits (148), Expect = 4.220e-11
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    7 FECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISC 126
            F C N+G++++++ SSRV DG+CDCCDGSDE +G+C   C
Sbjct:   30 FTCENKGYKSVKIYSSRVNDGICDCCDGSDEKEGVCENVC 69          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A066V8I7_9AGAM (PRKCSH-like domain-containing protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066V8I7_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 5.230e-11
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCD--CCDGSDEPKGLCSISCQRESEAW-INRLAER 168
            G F C N GH    + SSRV DG+C+  CCDGSDEP G+C   C+   E +   R AER
Sbjct:   79 GTFYCTNEGHIGANIKSSRVNDGICEPECCDGSDEPSGVCPNQCRENGEKYRAGREAER 137          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A4S4LSD5_9AGAM (Glucosidase 2 subunit beta n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LSD5_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 9.520e-11
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    4 VFECVNRGHRALRLPSSRVGDGVC--DCCDGSDEPKGLCSISCQRESEAWINRL-AER 168
            +F C N GH    +PSSRV DG+C  DCCDGSDEP G+C  +C+   E +   + AER
Sbjct:  408 LFYCKNEGHIGASIPSSRVNDGICEPDCCDGSDEPSGVCENTCKEVGEEYRRSVDAER 465          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A067JC22_JATCU (PRKCSH-like domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JC22_JATCU)

HSP 1 Score: 62.8 bits (151), Expect = 9.990e-11
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGL--CSISCQRESEAWINRLAER 168
            G F C+N GH    LPSSRV DG+CDCCDGSDE  G   CS +C +  +   ++L ++
Sbjct:   29 GKFYCLNVGHTPTYLPSSRVNDGICDCCDGSDEYDGKVNCSNTCWKAGKVTRDKLQKK 86          
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Match: A0A6A0A7H2_HAELA (PRKCSH-like domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A7H2_HAELA)

HSP 1 Score: 62.4 bits (150), Expect = 1.140e-10
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISCQRESEAWINRLAER 168
            G F C NRG+   +L +S V DGVCDCCDGSDE +G C  +C  +S +    + +R
Sbjct:   23 GSFYCANRGYEPQQLSASFVDDGVCDCCDGSDEARGRCKNTCLDKSSSQKQAIKDR 78          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114553.1160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y2_ECTSI1.750e-2373.21Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A6H5KIQ9_9PHAE2.910e-2269.64Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
A0A812L8W4_9DINO4.360e-1560.71Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp... [more]
A0A7R9U1R5_9VIRI8.270e-1353.57Glucosidase 2 subunit beta n=1 Tax=Prasinoderma co... [more]
A0A167HZH6_CALVF3.700e-1149.12Glucosidase 2 subunit beta n=1 Tax=Calocera viscos... [more]
D8LWM6_BLAHO4.220e-1155.00PRKCSH-like domain-containing protein n=1 Tax=Blas... [more]
A0A066V8I7_9AGAM5.230e-1149.15PRKCSH-like domain-containing protein (Fragment) n... [more]
A0A4S4LSD5_9AGAM9.520e-1150.00Glucosidase 2 subunit beta n=1 Tax=Bondarzewia mes... [more]
A0A067JC22_JATCU9.990e-1148.28PRKCSH-like domain-containing protein n=1 Tax=Jatr... [more]
A0A6A0A7H2_HAELA1.140e-1046.43PRKCSH-like domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114553contigH-elongata_contig114553:332..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue4.7e-08
Seed eggNOG ortholog984962.XP_009544264.1
KEGG koko:K08288
KEGG Pathwayko04141,map04141
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901135,GO:1901564,GO:1901576
EggNOG free text desc.Low-density lipoprotein receptor domain class A
EggNOG OGs225NX@155619,38EUH@33154,3H2RR@355688,3NY9J@4751,3UYD7@5204,KOG2397@1,KOG2397@2759
COG Functional cat.T
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.821-CDS-H-elongata_contig114553:331..5021622929661.821-CDS-H-elongata_contig114553:331..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114553 332..502 -
1691679110.0334415-CDS-H-elongata_contig114553:331..5021691679110.0334415-CDS-H-elongata_contig114553:331..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114553 332..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114553.1160.1prot_H-elongata_contig114553.1160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114553 332..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114553.1160.1

>prot_H-elongata_contig114553.1160.1 ID=prot_H-elongata_contig114553.1160.1|Name=mRNA_H-elongata_contig114553.1160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
GVFECVNRGHRALRLPSSRVGDGVCDCCDGSDEPKGLCSISCQRESEAWI
NRLAER*
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mRNA from alignment at H-elongata_contig114553:332..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114553.1160.1 ID=mRNA_H-elongata_contig114553.1160.1|Name=mRNA_H-elongata_contig114553.1160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig114553:332..502- (Himanthalia elongata Himel1 dioecious)
GGTGTGTTCGAGTGCGTGAATCGAGGACACAGAGCGTTGCGTCTTCCCTC CTCCAGGGTAGGAGATGGTGTATGCGACTGCTGCGACGGGAGCGACGAGC CTAAGGGTCTTTGCAGCATCTCTTGCCAGAGGGAGTCGGAGGCCTGGATC AACAGACTCGCAGAGAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig114553:332..502-

>mRNA_H-elongata_contig114553.1160.1 ID=mRNA_H-elongata_contig114553.1160.1|Name=mRNA_H-elongata_contig114553.1160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig114553:332..502- (Himanthalia elongata Himel1 dioecious)
GGTGTGTTCGAGTGCGTGAATCGAGGACACAGAGCGTTGCGTCTTCCCTC
CTCCAGGGTAGGAGATGGTGTATGCGACTGCTGCGACGGGAGCGACGAGC
CTAAGGGTCTTTGCAGCATCTCTTGCCAGAGGGAGTCGGAGGCCTGGATC
AACAGACTCGCAGAGAGGTAGGGTGTGTTCGAGTGCGTGAATCGAGGACA
CAGAGCGTTGCGTCTTCCCTCCTCCAGGGTAGGAGATGGTGTATGCGACT
GCTGCGACGGGAGCGACGAGCCTAAGGGTCTTTGCAGCATCTCTTGCCAG
AGGGAGTCGGAGGCCTGGATCAACAGACTCGCAGAGAGGTAG
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