mRNA_H-elongata_contig114550.1158.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: D8LBZ8_ECTSI (Protochlorophyllide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ8_ECTSI) HSP 1 Score: 127 bits (320), Expect = 2.980e-33 Identity = 62/87 (71.26%), Postives = 71/87 (81.61%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYPK 288
T +GIG AK LAASG+WHVI+AVRSFAK EA AK+ GMDP YT+M+LDLASL+SVRNFV +K A VKPDALVCNAAVW+PK
Sbjct: 95 TGASSGIGLEGAKFLAASGDWHVILAVRSFAKAEAGAKDLGMDPSTYTVMNLDLASLNSVRNFVAEIKAAKVKPDALVCNAAVWHPK 181
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A7S0Z1U2_9CRYP (Protochlorophyllide reductase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1U2_9CRYP) HSP 1 Score: 105 bits (262), Expect = 2.520e-24 Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYPK 288
T + +GIG AA ELA+ WHVIMAVRS++K + +A++AG D+YT+M +DLASL SVR+F + K G+ PDALVCNAAVWYP+
Sbjct: 107 TGSSSGIGLAAATELASKRGWHVIMAVRSYSKAQLAAQKAGFPEDSYTVMPVDLASLKSVRDFAASFKATGLTPDALVCNAAVWYPQ 193
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A6T8NUL2_HEMAN (Protochlorophyllide reductase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8NUL2_HEMAN) HSP 1 Score: 104 bits (260), Expect = 4.660e-24 Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYP 285
T + +GIG AA ELA WHVIMAVRS++K + +A++AG+ D+YT+M +DLASL SVR+F + K G+ PDALVCNAAVWYP
Sbjct: 98 TGSSSGIGLAAATELACKRGWHVIMAVRSYSKAKLAAQKAGIPEDSYTVMSVDLASLQSVRDFAASFKATGLVPDALVCNAAVWYP 183
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: L1JNU2_GUITC (Protochlorophyllide reductase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JNU2_GUITC) HSP 1 Score: 103 bits (257), Expect = 1.240e-23 Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYPKVWAEK 303
T +GIG AK ++A WHVIMAVRS++K +A+E GM+P YTIM+LDLASLSSVR+FV ++ G DA+VCNAAVWYP+ A +
Sbjct: 100 TGASSGIGLQTAKAMSADKGWHVIMAVRSYSKAARAAEEIGMEPGTYTIMNLDLASLSSVRDFVNQLRLLGRPIDAIVCNAAVWYPRDTAPR 191
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A7S1TKW4_9RHOD (Protochlorophyllide reductase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKW4_9RHOD) HSP 1 Score: 102 bits (253), Expect = 1.970e-23 Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKT----AGVKPDALVCNAAVWYPK 288
T + +G+G AAKELAA+G+W V+MAVRSFAK E + +EA ++P+ Y +M LDLASL+SVR FV +K+ A + +ALVCNAAVWYPK
Sbjct: 76 TGSSSGLGLEAAKELAATGDWLVVMAVRSFAKAEKAMREANINPENYRVMSLDLASLTSVRQFVDELKSFLSRARLDLNALVCNAAVWYPK 166
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A836C128_9CHLO (NADPH-protochlorophyllide oxidoreductase n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C128_9CHLO) HSP 1 Score: 100 bits (250), Expect = 4.130e-23 Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYP 285
T +G+G AAK LAA+GEWHV+MA R F K E +AK+AGM P +Y+IM LDL+SL SVR FV +++G + DALVCNAA++ P
Sbjct: 90 TGASSGLGLAAAKALAATGEWHVVMACRDFLKAEQAAKKAGMAPGSYSIMHLDLSSLESVRQFVNTFRSSGRRLDALVCNAAIYMP 175
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic n=4 Tax=Chlamydomonas TaxID=3052 RepID=POR_CHLRE) HSP 1 Score: 100 bits (250), Expect = 4.250e-23 Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYP 285
T +G+G NAAK LAA+GEWHV+MA R F K E +AK+ GM +Y+I+ LDL+SL SVR FVQ K +G + DALVCNAAV+ P
Sbjct: 91 TGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKVGMPAGSYSILHLDLSSLESVRQFVQNFKASGRRLDALVCNAAVYLP 176
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A383V7Z2_TETOB (NADPH-protochlorophyllide oxidoreductase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383V7Z2_TETOB) HSP 1 Score: 100 bits (249), Expect = 5.510e-23 Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYP 285
T +G+G NAA LA +G+WHVIMA R F+K E +AK+ GM +YT+M LDLASL+SVRNFV+ + +G + DALVCNAAV+ P
Sbjct: 89 TGASSGLGLNAAAALAKAGDWHVIMACRDFSKAEMAAKKMGMPAGSYTVMHLDLASLNSVRNFVENFRASGSRIDALVCNAAVYLP 174
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A2P6VKB3_9CHLO (NADPH-protochlorophyllide oxidoreductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VKB3_9CHLO) HSP 1 Score: 100 bits (248), Expect = 8.680e-23 Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYP 285
T +G+G NAA +A SG+WHV+MA R FAK E A++ GM +YT+M LDLASL SVR FVQ K +G + DALVCNAAV+ P
Sbjct: 83 TGASSGLGLNAANSMAQSGDWHVVMACRDFAKAEKEARKLGMPKGSYTVMHLDLASLESVRQFVQNFKNSGRRLDALVCNAAVYLP 168
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Match: A0A812P828_9DINO (Protochlorophyllide reductase n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812P828_9DINO) HSP 1 Score: 95.5 bits (236), Expect = 1.100e-22 Identity = 47/86 (54.65%), Postives = 65/86 (75.58%), Query Frame = 1
Query: 28 TRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGMDPDAYTIMDLDLASLSSVRNFVQAVKTAGVKPDALVCNAAVWYP 285
T +G+G AAKELAASG+W+VIMA R + K E +A++AGM ++Y ++ DLAS +SVR+FV+A ++ G DALVCNAAV+YP
Sbjct: 91 TGASSGLGLAAAKELAASGDWYVIMACRDYQKAEKAARDAGMLEESYEVLHCDLASTNSVRHFVKAFQSLGRPLDALVCNAAVYYP 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114550.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114550.1158.1 >prot_H-elongata_contig114550.1158.1 ID=prot_H-elongata_contig114550.1158.1|Name=mRNA_H-elongata_contig114550.1158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MSLPLTRRRTRTHTGIGFNAAKELAASGEWHVIMAVRSFAKTEASAKEAGback to top mRNA from alignment at H-elongata_contig114550:1284..1589+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114550.1158.1 ID=mRNA_H-elongata_contig114550.1158.1|Name=mRNA_H-elongata_contig114550.1158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig114550:1284..1589+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114550:1284..1589+ >mRNA_H-elongata_contig114550.1158.1 ID=mRNA_H-elongata_contig114550.1158.1|Name=mRNA_H-elongata_contig114550.1158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig114550:1284..1589+ (Himanthalia elongata Himel1 dioecious)back to top |