mRNA_H-elongata_contig114508.1155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114508.1155.1
Unique NamemRNA_H-elongata_contig114508.1155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114508.1155.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.390e-49
Identity = 83/138 (60.14%), Postives = 113/138 (81.88%), Query Frame = 1 
Query:    1 IIVGMPGAGKSNLGNRLLDYPASDPFEEGEGTAGVSTTTQTKRAEFSDLIVIDTPGFPNKDIHTTVRSFDVILQSIRREGSLSTLLFLLNQEEVCPSEFGKYAVLLEQFNHLSCSKLMVCRQPESFTRRNKRTQDEKR 414
            +++GMP AGKSNL N+LL++P  D FEEG+GT G  +TT+T+R E++DL+VIDTPGFP  D  TT ++FD +++++RREGSLSTL+FL+ QEEV P+EF  YAVLL Q NHL CSKL+VCRQ  + +RR+KRT++E+R
Sbjct:   37 MVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYG--STTETQRVEWADLVVIDTPGFPGHDPKTTSKNFDALVKALRREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLPCSKLIVCRQA-ALSRRHKRTEEERR 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114508.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSX4_9PHAE1.390e-4960.14G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114508contigH-elongata_contig114508:1047..1460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.5151267-UTR-H-elongata_contig114508:1046..10581622929661.5151267-UTR-H-elongata_contig114508:1046..1058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114508 1047..1058 +
1691679109.9542851-UTR-H-elongata_contig114508:1046..10581691679109.9542851-UTR-H-elongata_contig114508:1046..1058Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114508 1047..1058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.5324888-CDS-H-elongata_contig114508:1058..14601622929661.5324888-CDS-H-elongata_contig114508:1058..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114508 1059..1460 +
1691679109.963677-CDS-H-elongata_contig114508:1058..14601691679109.963677-CDS-H-elongata_contig114508:1058..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114508 1059..1460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114508.1155.1prot_H-elongata_contig114508.1155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114508 1059..1460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114508.1155.1

>prot_H-elongata_contig114508.1155.1 ID=prot_H-elongata_contig114508.1155.1|Name=mRNA_H-elongata_contig114508.1155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MPGAGKSNLGNRLLDYPASDPFEEGEGTAGVSTTTQTKRAEFSDLIVIDT
PGFPNKDIHTTVRSFDVILQSIRREGSLSTLLFLLNQEEVCPSEFGKYAV
LLEQFNHLSCSKLMVCRQPESFTRRNKRTQDEKR
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mRNA from alignment at H-elongata_contig114508:1047..1460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114508.1155.1 ID=mRNA_H-elongata_contig114508.1155.1|Name=mRNA_H-elongata_contig114508.1155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig114508:1047..1460+ (Himanthalia elongata Himel1 dioecious)
ATTATCGTGGGGATGCCAGGCGCGGGAAAGTCGAACCTTGGGAACAGGCT
ACTTGACTACCCCGCGAGCGACCCTTTTGAGGAAGGGGAGGGTACGGCGG
GAGTCTCCACGACCACACAGACCAAGCGTGCGGAGTTTAGCGACCTGATT
GTGATCGACACTCCTGGATTTCCCAACAAGGATATTCACACGACGGTCCG
CTCTTTTGATGTCATCTTGCAGTCAATAAGACGGGAGGGCAGTTTGAGCA
CGCTCTTGTTTCTGCTTAATCAAGAAGAAGTTTGTCCCTCAGAGTTCGGA
AAATACGCGGTTCTGCTGGAGCAATTCAACCATCTTTCCTGCTCGAAGCT
GATGGTGTGTAGACAGCCAGAATCGTTCACCCGCCGAAACAAGAGAACCC
AAGACGAGAAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig114508:1047..1460+

>mRNA_H-elongata_contig114508.1155.1 ID=mRNA_H-elongata_contig114508.1155.1|Name=mRNA_H-elongata_contig114508.1155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig114508:1047..1460+ (Himanthalia elongata Himel1 dioecious)
ATGCCAGGCGCGGGAAAGTCGAACCTTGGGAACAGGCTACTTGACTACCC
CGCGAGCGACCCTTTTGAGGAAGGGGAGGGTACGGCGGGAGTCTCCACGA
CCACACAGACCAAGCGTGCGGAGTTTAGCGACCTGATTGTGATCGACACT
CCTGGATTTCCCAACAAGGATATTCACACGACGGTCCGCTCTTTTGATGT
CATCTTGCAGTCAATAAGACGGGAGGGCAGTTTGAGCACGCTCTTGTTTC
TGCTTAATCAAGAAGAAGTTTGTCCCTCAGAGTTCGGAAAATACGCGGTT
CTGCTGGAGCAATTCAACCATCTTTCCTGCTCGAAGCTGATGGTGTGTAG
ACAGCCAGAATCGTTCACCCGCCGAAACAAGAGAACCCAAGACGAGAAGA
GGATGCCAGGCGCGGGAAAGTCGAACCTTGGGAACAGGCTACTTGACTAC
CCCGCGAGCGACCCTTTTGAGGAAGGGGAGGGTACGGCGGGAGTCTCCAC
GACCACACAGACCAAGCGTGCGGAGTTTAGCGACCTGATTGTGATCGACA
CTCCTGGATTTCCCAACAAGGATATTCACACGACGGTCCGCTCTTTTGAT
GTCATCTTGCAGTCAATAAGACGGGAGGGCAGTTTGAGCACGCTCTTGTT
TCTGCTTAATCAAGAAGAAGTTTGTCCCTCAGAGTTCGGAAAATACGCGG
TTCTGCTGGAGCAATTCAACCATCTTTCCTGCTCGAAGCTGATGGTGTGT
AGACAGCCAGAATCGTTCACCCGCCGAAACAAGAGAACCCAAGACGAGAA
GAGG
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