mRNA_H-elongata_contig11435.1147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11435.1147.1
Unique NamemRNA_H-elongata_contig11435.1147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11435.1147.1 vs. uniprot
Match: A0A6H5KJL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 9.370e-44
Identity = 73/107 (68.22%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 IAAGVLDPLVETLGHESAKVRADALRLISCMAAGSSDQVDAVTSTVDLVPTVVAELEEGNALCRREAAWVFLNICECGFETHDDVIPEMVEHGVISAVCHNLDARAD 321
            I AGVLDPLVETLGH+S+KVR  ALRL+SC+AAGS++QVDAV ST D++P+V+ ELEEGNALC+REAAWVFLN+CEC  +    +IPE+V HGVI+AVC NL + +D
Sbjct:   36 IEAGVLDPLVETLGHDSSKVRGGALRLLSCIAAGSAEQVDAVVSTADIIPSVMVELEEGNALCKREAAWVFLNMCECSGDPRATIIPEIVGHGVIAAVCENLSSDSD 142
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BLAST of mRNA_H-elongata_contig11435.1147.1 vs. uniprot
Match: D7G3N3_ECTSI (Importin alpha-7 subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.630e-16
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:  157 VAELEEGNALCRREAAWVFLNICECGFETHDDVIPEMVEHGVISAVCHNLDARAD 321
            + ELEEGNALC+REAAWVFLN+CEC  +  + +IPE+V HGVI+AVC NL + +D
Sbjct:    1 MVELEEGNALCKREAAWVFLNMCECSGDPGETIIPEIVGHGVIAAVCENLSSDSD 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11435.1147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJL7_9PHAE9.370e-4468.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3N3_ECTSI1.630e-1663.64Importin alpha-7 subunit, putative n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11435contigH-elongata_contig11435:2919..3887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-19_001000.1
Exons3
Model size326
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11435.1147.1prot_H-elongata_contig11435.1147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11435 2920..3887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.6187792-CDS-H-elongata_contig11435:2919..30911622929660.6187792-CDS-H-elongata_contig11435:2919..3091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11435 2920..3091 -
1691679109.6514194-CDS-H-elongata_contig11435:2919..30911691679109.6514194-CDS-H-elongata_contig11435:2919..3091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11435 2920..3091 -
1622929660.6351838-CDS-H-elongata_contig11435:3536..36311622929660.6351838-CDS-H-elongata_contig11435:3536..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11435 3537..3631 -
1691679109.6605976-CDS-H-elongata_contig11435:3536..36311691679109.6605976-CDS-H-elongata_contig11435:3536..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11435 3537..3631 -
1622929660.6509452-CDS-H-elongata_contig11435:3830..38871622929660.6509452-CDS-H-elongata_contig11435:3830..3887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11435 3831..3887 -
1691679109.6694715-CDS-H-elongata_contig11435:3830..38871691679109.6694715-CDS-H-elongata_contig11435:3830..3887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11435 3831..3887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11435.1147.1

>prot_H-elongata_contig11435.1147.1 ID=prot_H-elongata_contig11435.1147.1|Name=mRNA_H-elongata_contig11435.1147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
IAAGVLDPLVETLGHESAKVRADALRLISCMAAGSSDQVDAVTSTVDLVP
TVVAELEEGNALCRREAAWVFLNICECGFETHDDVIPEMVEHGVISAVCH
NLDARADV
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mRNA from alignment at H-elongata_contig11435:2919..3887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11435.1147.1 ID=mRNA_H-elongata_contig11435.1147.1|Name=mRNA_H-elongata_contig11435.1147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at H-elongata_contig11435:2919..3887- (Himanthalia elongata Himel1 dioecious)
ATTGCGGCCGGAGTGCTAGATCCGCTGGTGGAGACGCTAGGTCACGAAAG
CGCCAAGGTGTCAGTCGATCCTTGCACGCGCTGTAGCCCAATGGTGCCGC
GGACTCGCGCGCTCTGGTAGCTGATGAACAACCGATTCATGCACGAGAAG
ATAGTACGAAACGGTTCAAAAACATGATACGCTTCATCATAACATTTAGT
CAGTTAGTTACAAATGCTGGCGCTTTGGTCTGCCGTGGTCGTTCCCGTTG
GCCCAGGTTCGAGCTGACGCCCTCCGCCTGATCTCTTGCATGGCGGCGGG
ATCTTCGGATCAAGTGGACGCGGTGACCTCTACCGTCGATCTGGTTCCCA
CGTACGTTTGGGTGGTGAAGTGCTCTCCCCCCGTAATCTCTCCCGCCCTT
GAATCATCTGTCATTCCCTTTGCCCTGCGTGTAATTCTTCACTGTGTTGC
CTCGTTTTCCTAGACTCCAGGTCAAGACGTTGAAAAAGGCGTGCGGTATA
GAGGTAGTAAAACGTTTTCGCGCGGCGATAACTTCCTCAATCATGCTTTG
TCCGCATCCAGGGATCTTTATCTTGATACTAATAATGATATACCGTATGT
AGCGATTCTGCTTGTGCTCCTGCCCTGTCTCCCCATCGCTAAAATATACA
AAAAAAATATGTATCTCTAGCCACCTAGCTCCGTCCTCCCGAGAACGCGT
AGTCAATGTTCTCACACCGAATGCGTGCCAAATTTGAGTATACCTCCCCC
GCCCCTTTCGAAACCCCCTCTCGATCACACCACTTCTTCTGAAAAGCGTG
GTGGCGGAACTCGAGGAGGGTAATGCTCTTTGCAGGCGTGAGGCGGCGTG
GGTGTTCCTCAACATCTGCGAGTGCGGTTTCGAGACACACGATGACGTCA
TCCCGGAGATGGTGGAACACGGCGTGATATCAGCGGTGTGTCACAACCTC
GACGCTCGCGCCGACGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig11435:2919..3887-

>mRNA_H-elongata_contig11435.1147.1 ID=mRNA_H-elongata_contig11435.1147.1|Name=mRNA_H-elongata_contig11435.1147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig11435:2919..3887- (Himanthalia elongata Himel1 dioecious)
ATTGCGGCCGGAGTGCTAGATCCGCTGGTGGAGACGCTAGGTCACGAAAG
CGCCAAGATTGCGGCCGGAGTGCTAGATCCGCTGGTGGAGACGCTAGGTC
ACGAAAGCGCCAAGGTTCGAGCTGACGCCCTCCGCCTGATCTCTTGCATG
GCGGCGGGATCTTCGGATCAAGTGGACGCGGTGACCTCTACCGTCGATCT
GGTTCCCACGTTCGAGCTGACGCCCTCCGCCTGATCTCTTGCATGGCGGC
GGGATCTTCGGATCAAGTGGACGCGGTGACCTCTACCGTCGATCTGGTTC
CCACCGTGGTGGCGGAACTCGAGGAGGGTAATGCTCTTTGCAGGCGTGAG
GCGGCGTGGGTGTTCCTCAACATCTGCGAGTGCGGTTTCGAGACACACGA
TGACGTCATCCCGGAGATGGTGGAACACGGCGTGATATCAGCGGTGTGTC
ACAACCTCGACGCTCGCGCCGACGTGCGTGGTGGCGGAACTCGAGGAGGG
TAATGCTCTTTGCAGGCGTGAGGCGGCGTGGGTGTTCCTCAACATCTGCG
AGTGCGGTTTCGAGACACACGATGACGTCATCCCGGAGATGGTGGAACAC
GGCGTGATATCAGCGGTGTGTCACAACCTCGACGCTCGCGCCGACGTG
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