mRNA_H-elongata_contig114273.1139.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114273.1139.1
Unique NamemRNA_H-elongata_contig114273.1139.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114273.1139.1 vs. uniprot
Match: UPI0009049654 (uncharacterized protein LOC109222647 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009049654)

HSP 1 Score: 78.6 bits (192), Expect = 1.760e-13
Identity = 58/207 (28.02%), Postives = 98/207 (47.34%), Query Frame = 1 
Query:    1 WFEITFFLKVVEPLFQLVRLADGTKPQAAQLLYRLHNVLDDLKEAFRTDPDLAGIKERHEPLEDALDKRRE-YMHSPVYGAAFCLAPEYYRKDAAMIDDGQPLTDLRTMAERLL----INHCSDSRVAILASRDEDKGGPVGKVMIQYVRYMSGNSPGAIFLEQAKSLTGAEWWNTLGKAGFPDLAQVAGRALSMVPAAAGCERNWS 606
            W ++ + LK++ PLF+++RL D  K  A   +Y     +D  KEA        G   +++ + + +D+R E  +H P++ A   L PEY+ +D A+ +  +    L    ++L+    +     S + +    +   G P+ K      R  +  SP             AEWWN  G +  P L ++A R LS+  ++AGCERNWS
Sbjct:  332 WNQVVYILKIMGPLFKVLRLVDNEKKPAMGYIYE---AMDRAKEAIAKS--FEGKSAKYKDVFEIIDQRWECQLHQPLHAAGHYLNPEYFYQDPAIENCREVTNGLYACIQKLVPSIEVQDKIVSELPLYTRAEGQFGLPMAK------RSRATRSP-------------AEWWNLYGNSA-PHLQKLAIRILSLTASSAGCERNWS 513
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BLAST of mRNA_H-elongata_contig114273.1139.1 vs. uniprot
Match: UPI000904AAD1 (uncharacterized protein LOC109230180 n=2 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904AAD1)

HSP 1 Score: 78.2 bits (191), Expect = 2.580e-13
Identity = 58/207 (28.02%), Postives = 97/207 (46.86%), Query Frame = 1 
Query:    1 WFEITFFLKVVEPLFQLVRLADGTKPQAAQLLYRLHNVLDDLKEAFRTDPDLAGIKERHEPLEDALDKRRE-YMHSPVYGAAFCLAPEYYRKDAAMIDDGQPLTDLRTMAERLL----INHCSDSRVAILASRDEDKGGPVGKVMIQYVRYMSGNSPGAIFLEQAKSLTGAEWWNTLGKAGFPDLAQVAGRALSMVPAAAGCERNWS 606
            W ++ + LK++ PLF+++RL D  K  A    Y     +D  KEA        G   +++ + + +D+R E  +H P++ A   L PEY+ +D A+ +  +    L    ++L+    +     S + +    +   G P+ K      R  +  SP             AEWWN  G +  P L ++A R LS+  ++AGCERNWS
Sbjct:  435 WNQVVYILKIIGPLFKVLRLVDNEKKPAMGYTYE---AMDRAKEAIAKS--FEGKSAKYKDVFEIIDQRWECQLHQPLHAAGHYLNPEYFYQDPAIENCREVTNGLYACIQKLVPSIEVQDKIVSELPLYTRAEGQFGLPMAK------RSRATRSP-------------AEWWNLYGNSA-PHLQKLAIRILSLTASSAGCERNWS 616
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BLAST of mRNA_H-elongata_contig114273.1139.1 vs. uniprot
Match: UPI0019D64DD1 (uncharacterized protein LOC120653517 n=4 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D64DD1)

HSP 1 Score: 65.1 bits (157), Expect = 8.090e-9
Identity = 55/209 (26.32%), Postives = 93/209 (44.50%), Query Frame = 1 
Query:    1 WFEITFFLKVVEPLFQLVRLADGTKPQAAQLLY-RLHNVLDDLKEAFRTDPDLAGIKERHEPLEDALDKRRE-YMHSPVYGAAFCLAPEYYRKDAAMIDDGQPLTDLRTMAERLLINHCSDSRVAILASRDEDKGGPVGKVMIQYVRYMSGNSPGAIFLEQAKSLTG-----AEWWNTLGKAGFPDLAQVAGRALSMVPAAAGCERNWS 606
            W E+   L V EPLF+++RLADG    +   +Y  L     ++KE F         + R + +   ++K+ +  + SP++  A+ L P Y   + ++ D+ +             +N    + V      DEDK      + ++  +    N  GA   + A++        A WW   G    P L ++A R LS+  +A+GCERNWS
Sbjct:  443 WKEVKLILAVFEPLFKVLRLADGDVKASMGFIYGELLKAKREIKEVF------GNNETRFKDVLAVIEKKMKGRLDSPLHLTAYLLNPHYSFTNPSIFDEPK-------------MNEAFIACVEQFYYHDEDKQDQAANIELKKFQ----NREGAFSKKLARTFENFDYNPASWWRLYGSH-TPALQKMATRILSLTSSASGCERNWS 627
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BLAST of mRNA_H-elongata_contig114273.1139.1 vs. uniprot
Match: A0A843V130_COLES (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843V130_COLES)

HSP 1 Score: 56.2 bits (134), Expect = 4.970e-6
Identity = 55/205 (26.83%), Postives = 87/205 (42.44%), Query Frame = 1 
Query:    1 WFEITFFLKVVEPLFQLVRLADGTKPQAAQLLYRLHNVLDDLKEAFRTDPDLAGIKERHEPLEDALDKRREY-MHSPVYGAAFCLAPEYYRKDAAMIDDGQPLTDLRTMAERLLINHCSDSRVAILASRDEDKGGPVGKVMIQYVRYMSGNSPGAIFLEQAKSLTGAEWWNTLG-KAGFPD-LAQVAGRALSMVPAAAGCERNWS 606
            W  I ++LK++EPL Q++R+ DG        LY     +D  KE  R    +   K         +D R E  +H  ++ A +   P +   D+   +DG+ L     +  RL  N  +D R+  +   D  K      + +   R            E    ++  EWW  L  K G  + LA++A R LS   +++ CERNWS
Sbjct:   73 WDRILYYLKLIEPLVQVLRMVDGEDKNDMGYLYE---AMDKAKERLREKHPMTFQKWWR-----IIDARWESTLHHDLHAAGYFFNPRHQYSDSPH-NDGEVLQGTINVISRLFRN--TDERIDAMMEMDRFK------LKLDIYRDYD-------LREAVNRMSPGEWWVMLDYKTGQRNPLARIAIRVLSQTTSSSQCERNWS 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114273.1139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00090496541.760e-1328.02uncharacterized protein LOC109222647 n=1 Tax=Nicot... [more]
UPI000904AAD12.580e-1328.02uncharacterized protein LOC109230180 n=2 Tax=Nicot... [more]
UPI0019D64DD18.090e-926.32uncharacterized protein LOC120653517 n=4 Tax=Panic... [more]
A0A843V130_COLES4.970e-626.83Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114273contigH-elongata_contig114273:135..740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog38727.Pavir.J27890.1.p
EggNOG free text desc.source UniProtKB
EggNOG OGs2C7QK@1,2QUNQ@2759,37QB2@33090,3GCE5@35493,3IMMY@38820,3M2VI@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929659.8933797-CDS-H-elongata_contig114273:134..7401622929659.8933797-CDS-H-elongata_contig114273:134..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114273 135..740 +
1691679109.3635-CDS-H-elongata_contig114273:134..7401691679109.3635-CDS-H-elongata_contig114273:134..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114273 135..740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114273.1139.1prot_H-elongata_contig114273.1139.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114273 135..740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114273.1139.1

>prot_H-elongata_contig114273.1139.1 ID=prot_H-elongata_contig114273.1139.1|Name=mRNA_H-elongata_contig114273.1139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
WFEITFFLKVVEPLFQLVRLADGTKPQAAQLLYRLHNVLDDLKEAFRTDP
DLAGIKERHEPLEDALDKRREYMHSPVYGAAFCLAPEYYRKDAAMIDDGQ
PLTDLRTMAERLLINHCSDSRVAILASRDEDKGGPVGKVMIQYVRYMSGN
SPGAIFLEQAKSLTGAEWWNTLGKAGFPDLAQVAGRALSMVPAAAGCERN
WS
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mRNA from alignment at H-elongata_contig114273:135..740+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114273.1139.1 ID=mRNA_H-elongata_contig114273.1139.1|Name=mRNA_H-elongata_contig114273.1139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig114273:135..740+ (Himanthalia elongata Himel1 dioecious)
TGGTTCGAGATCACTTTCTTCTTGAAAGTGGTCGAGCCGCTCTTTCAGCT
TGTTCGTCTCGCCGACGGCACCAAGCCCCAGGCGGCCCAGCTGTTATACA
GACTGCACAACGTCCTGGACGACTTGAAGGAGGCTTTCCGGACCGACCCC
GACCTCGCCGGCATCAAAGAGCGGCACGAGCCGCTGGAGGACGCCTTGGA
CAAGCGCCGGGAGTACATGCACTCTCCGGTGTACGGAGCTGCTTTCTGTC
TGGCTCCGGAGTACTACCGTAAAGACGCAGCTATGATCGACGACGGGCAG
CCGCTCACGGACCTGCGGACGATGGCGGAGAGGCTGTTAATTAATCACTG
CAGCGACTCACGTGTGGCCATTCTGGCGTCGAGGGATGAAGACAAGGGCG
GGCCGGTCGGGAAAGTCATGATTCAGTACGTGAGGTACATGTCGGGGAAT
TCCCCTGGTGCCATATTTCTCGAGCAAGCCAAGTCTCTGACGGGGGCGGA
GTGGTGGAACACCCTCGGCAAGGCGGGTTTTCCAGATCTGGCGCAAGTGG
CGGGCCGTGCTCTATCTATGGTGCCAGCTGCGGCCGGGTGTGAACGTAAT
TGGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig114273:135..740+

>mRNA_H-elongata_contig114273.1139.1 ID=mRNA_H-elongata_contig114273.1139.1|Name=mRNA_H-elongata_contig114273.1139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig114273:135..740+ (Himanthalia elongata Himel1 dioecious)
TGGTTCGAGATCACTTTCTTCTTGAAAGTGGTCGAGCCGCTCTTTCAGCT
TGTTCGTCTCGCCGACGGCACCAAGCCCCAGGCGGCCCAGCTGTTATACA
GACTGCACAACGTCCTGGACGACTTGAAGGAGGCTTTCCGGACCGACCCC
GACCTCGCCGGCATCAAAGAGCGGCACGAGCCGCTGGAGGACGCCTTGGA
CAAGCGCCGGGAGTACATGCACTCTCCGGTGTACGGAGCTGCTTTCTGTC
TGGCTCCGGAGTACTACCGTAAAGACGCAGCTATGATCGACGACGGGCAG
CCGCTCACGGACCTGCGGACGATGGCGGAGAGGCTGTTAATTAATCACTG
CAGCGACTCACGTGTGGCCATTCTGGCGTCGAGGGATGAAGACAAGGGCG
GGCCGGTCGGGAAAGTCATGATTCAGTACGTGAGGTACATGTCGGGGAAT
TCCCCTGGTGCCATATTTCTCGAGCAAGCCAAGTCTCTGACGGGGGCGGA
GTGGTGGAACACCCTCGGCAAGGCGGGTTTTCCAGATCTGGCGCAAGTGG
CGGGCCGTGCTCTATCTATGGTGCCAGCTGCGGCCGGGTGTGAACGTAAT
TGGAGCTGGTTCGAGATCACTTTCTTCTTGAAAGTGGTCGAGCCGCTCTT
TCAGCTTGTTCGTCTCGCCGACGGCACCAAGCCCCAGGCGGCCCAGCTGT
TATACAGACTGCACAACGTCCTGGACGACTTGAAGGAGGCTTTCCGGACC
GACCCCGACCTCGCCGGCATCAAAGAGCGGCACGAGCCGCTGGAGGACGC
CTTGGACAAGCGCCGGGAGTACATGCACTCTCCGGTGTACGGAGCTGCTT
TCTGTCTGGCTCCGGAGTACTACCGTAAAGACGCAGCTATGATCGACGAC
GGGCAGCCGCTCACGGACCTGCGGACGATGGCGGAGAGGCTGTTAATTAA
TCACTGCAGCGACTCACGTGTGGCCATTCTGGCGTCGAGGGATGAAGACA
AGGGCGGGCCGGTCGGGAAAGTCATGATTCAGTACGTGAGGTACATGTCG
GGGAATTCCCCTGGTGCCATATTTCTCGAGCAAGCCAAGTCTCTGACGGG
GGCGGAGTGGTGGAACACCCTCGGCAAGGCGGGTTTTCCAGATCTGGCGC
AAGTGGCGGGCCGTGCTCTATCTATGGTGCCAGCTGCGGCCGGGTGTGAA
CGTAATTGGAGC
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