mRNA_H-elongata_contig114197.1135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114197.1135.1
Unique NamemRNA_H-elongata_contig114197.1135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: D8LSE3_ECTSI (DSBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE3_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 7.890e-45
Identity = 72/108 (66.67%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    4 CFRCYVGKARLDKAVVEYERSHPD-----ASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGKADEV 312
            C  CYVGKARL  A+  +ERS        A V+V+FSPYMID  T+PGGEEYL YN+RRWGGDGWT+SLKRS++ DGC+FA W TWPNSLLAHRL KFA  AGK D+V
Sbjct:   60 CPWCYVGKARLGAAIEAFERSSTSDGKGRARVQVSFSPYMIDPRTQPGGEEYLVYNKRRWGGDGWTASLKRSSKKDGCDFAKWETWPNSLLAHRLQKFADSAGKGDQV 167          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: UPI0009E6346F (uncharacterized protein LOC110051917 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E6346F)

HSP 1 Score: 131 bits (330), Expect = 3.090e-36
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 TCFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFAS-DAGKADEVQDKEKYYHAV 342
            +C  CYVGKARLDKA+ ++     DAS+ V + PY+IDKNT P GE+Y+AYN RRWGGDGWT SL+++ + DG EF NW TWPNSL  HRL+  A    G   + + K+  +H +
Sbjct:   11 SCPWCYVGKARLDKAIQKFT----DASITVNWHPYIIDKNTAPLGEDYMAYNTRRWGGDGWTRSLRQAGQQDGLEFKNWKTWPNSLHGHRLIHLAGIQKGPEGQAKAKDLLFHMI 121          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: A0A7S3XRH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRH4_HETAK)

HSP 1 Score: 129 bits (324), Expect = 4.680e-35
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    4 CFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASD 291
            C  CYVGKAR++ A+ +   ++ DASV V + PY ID  T+P GEEYL+YNRRRWGGDGWT SL+R+ R  G  FA+W TWPN+L AHRL++   D
Sbjct:   20 CPWCYVGKARMEAAIAQLRENNEDASVEVRWHPYQIDAATQPDGEEYLSYNRRRWGGDGWTHSLRRAGRQSGLGFASWATWPNTLHAHRLMQLVQD 115          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: A0A388LLX2_CHABU (DSBA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLX2_CHABU)

HSP 1 Score: 122 bits (305), Expect = 2.360e-32
Identity = 58/106 (54.72%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    4 CFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGKADEVQDK 321
            C  CYVGKARLD A+   E     A V V +  YMID  T+  GEEYLAYNRRRWG DGWT SL+ SAR DG  F +W  WPN+L AHRL+  A   G+  E +D+
Sbjct:   24 CPWCYVGKARLDSAISSLE-GEGKAKVDVRWHAYMIDSRTKSNGEEYLAYNRRRWGSDGWTHSLRSSARRDGLAFGDWKWWPNTLHAHRLVHLAEKVGRGSEAKDR 128          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: A0A3M6TB66_POCDA (DSBA domain-containing protein n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6TB66_POCDA)

HSP 1 Score: 122 bits (305), Expect = 6.750e-32
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 TCFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGKADEVQDKEK 327
            +C  CYVGK RLDKA+ +Y     +A + V + PY+IDKNT   GE+Y+AYN RRWGGDGWT SL+R+ + DG  F NW TWPNSL  HRL+  A    K  E Q K K
Sbjct:   64 SCPWCYVGKRRLDKAIQQYT----EAGITVHWHPYIIDKNTAEMGEDYMAYNTRRWGGDGWTRSLRRAGQQDGLGFKNWKTWPNSLHGHRLIHLAG-MQKGPEGQGKAK 167          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: A0A176WK32_MARPO (DSBA domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WK32_MARPO)

HSP 1 Score: 120 bits (300), Expect = 1.270e-31
Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 TCFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGKADEVQ 315
            +C  CYVGK RLD+A++  +       + V + PYMIDK TRP GEEYLAYN+RRWG D WT  L+RS   +G +F NW  WPN+L AHRL+  A   G+  + +
Sbjct:   20 SCPWCYVGKTRLDQAILNIQAKTQTPRIVVKWHPYMIDKKTRPEGEEYLAYNKRRWGSDSWTQDLRRSGAKNGLKFGNWRWWPNTLNAHRLILLAETYGRGPDAK 124          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: A0A1Y1IQU1_KLENI (DSBA domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQU1_KLENI)

HSP 1 Score: 120 bits (300), Expect = 1.300e-31
Identity = 56/107 (52.34%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    4 CFRCYVGKARLDKAV--VEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGKADEVQD 318
            C  CYVGKARLD+A+  VE   +     V V + PYMID  T P GE+YLAYN+RRWG  GWT SL+ S   +G +F +W  WPN+L AHRL+  AS  GK  E +D
Sbjct:   22 CPWCYVGKARLDQAIRNVEMRSAGKPLKVEVAWHPYMIDLGTNPAGEDYLAYNKRRWGSGGWTQSLRGSGARNGLKFKDWNHWPNTLHAHRLVDLASSVGKGPEAED 128          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: UPI000A2A9E70 (uncharacterized protein LOC110250627 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9E70)

HSP 1 Score: 119 bits (298), Expect = 2.290e-31
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    4 CFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFA 285
            C  CYVGK +LD A+ ++   +P+ ++ V + PY+IDKNT   GEEY+ YNRRRWG DGWT+SL+ + +  G EF NW TWPN++ AHRL+  A
Sbjct:   14 CPWCYVGKRQLDLAIQQFTSDNPNVNITVNWHPYIIDKNTAQNGEEYMTYNRRRWGSDGWTNSLRNAGKRIGLEFRNWKTWPNTVNAHRLVHLA 107          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: E1ZIP9_CHLVA (DSBA domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIP9_CHLVA)

HSP 1 Score: 118 bits (296), Expect = 5.610e-31
Identity = 53/106 (50.00%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 TCFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGKADEVQD 318
            +C  C+VGK R+D+A+ + E+        V +  Y+ID  T PGGE+YLAYNRRRWGGDGWT  L+RS   DG  FA+W  WP+SL  H+LL  A + GK  E +D
Sbjct:   16 SCPWCWVGKKRMDQALAQLEQ----VDFEVVYHAYVIDHKTDPGGEQYLAYNRRRWGGDGWTGDLRRSGSPDGATFADWVWWPSSLKGHQLLLLAQEQGKGREAKD 117          
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Match: A7S8S9_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S8S9_NEMVE)

HSP 1 Score: 117 bits (293), Expect = 1.430e-30
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    4 CFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLAYNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFA 285
            C  CYVGK  LD A+ ++  S+P  ++ V + PY+IDKNT   GE+Y+ YN RRWGGDGWT SL+ S R  G EF NW  WPN+L AHR++  A
Sbjct:   14 CPWCYVGKGHLDNAISQFTSSNPTTNIIVNWHPYIIDKNTAENGEKYINYNVRRWGGDGWTQSLRNSGRQIGLEFKNWQIWPNTLHAHRVVHLA 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114197.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSE3_ECTSI7.890e-4566.67DSBA domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI0009E6346F3.090e-3652.17uncharacterized protein LOC110051917 n=1 Tax=Orbic... [more]
A0A7S3XRH4_HETAK4.680e-3557.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388LLX2_CHABU2.360e-3254.72DSBA domain-containing protein n=1 Tax=Chara braun... [more]
A0A3M6TB66_POCDA6.750e-3254.13DSBA domain-containing protein n=2 Tax=Pocillopori... [more]
A0A176WK32_MARPO1.270e-3149.52DSBA domain-containing protein n=2 Tax=Marchantia ... [more]
A0A1Y1IQU1_KLENI1.300e-3152.34DSBA domain-containing protein n=1 Tax=Klebsormidi... [more]
UPI000A2A9E702.290e-3152.13uncharacterized protein LOC110250627 n=1 Tax=Exaip... [more]
E1ZIP9_CHLVA5.610e-3150.00DSBA domain-containing protein n=1 Tax=Chlorella v... [more]
A7S8S9_NEMVE1.430e-3053.19Predicted protein n=1 Tax=Nematostella vectensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114197contigH-elongata_contig114197:689..1594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D8LSE3
EggNOG free text desc.DSBA-like thioredoxin domain
EggNOG OGs2S2Z6@2759,COG2761@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929659.590624-CDS-H-elongata_contig114197:688..8361622929659.590624-CDS-H-elongata_contig114197:688..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114197 689..836 -
1691679109.2395232-CDS-H-elongata_contig114197:688..8361691679109.2395232-CDS-H-elongata_contig114197:688..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114197 689..836 -
1622929659.6052477-CDS-H-elongata_contig114197:1394..15941622929659.6052477-CDS-H-elongata_contig114197:1394..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114197 1395..1594 -
1691679109.2488317-CDS-H-elongata_contig114197:1394..15941691679109.2488317-CDS-H-elongata_contig114197:1394..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114197 1395..1594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114197.1135.1prot_H-elongata_contig114197.1135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114197 689..1594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114197.1135.1

>prot_H-elongata_contig114197.1135.1 ID=prot_H-elongata_contig114197.1135.1|Name=mRNA_H-elongata_contig114197.1135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
TCFRCYVGKARLDKAVVEYERSHPDASVRVTFSPYMIDKNTRPGGEEYLA
YNRRRWGGDGWTSSLKRSARDDGCEFANWTTWPNSLLAHRLLKFASDAGK
ADEVQDKEKYYHAVI*
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mRNA from alignment at H-elongata_contig114197:689..1594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114197.1135.1 ID=mRNA_H-elongata_contig114197.1135.1|Name=mRNA_H-elongata_contig114197.1135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig114197:689..1594- (Himanthalia elongata Himel1 dioecious)
ACATGTTTTAGGTGTTATGTTGGCAAGGCGCGCCTCGACAAGGCGGTGGT GGAGTACGAGCGATCGCACCCCGACGCAAGCGTGCGCGTCACCTTCAGCC CCTACATGATTGACAAAAACACGCGCCCCGGTGGTGAGGAGTACCTCGCG TACAACAGGCGGCGGTGGGGAGGGGACGGGTGGACATCGTCCCTCAAGAG GTACGTAATTTTACTTACCACACCAATACACACGAGAAGTCCCGAAGTTA GCCGCAGCGGCTGGACTGCCTCGTATAGTTATAGTTATATATGTAAAATA GTGTAGAATAATAATATTACCGTTCGTGTGACGCCACACGAGCTACAGGC AAGCACTTCCGTGGTTTCGAGTCGTCATTCCCCTCCCCCCCCAAATTATA CTATGATATGTATTATGAATCAATACGAAGCCGGACATCGCGAGGGGAGC AGTATTCGTGGGAGTACGCGGACGACTGGGCGGAGATGTACGCGTCCGGA GGCGCCCGCAGACAGCGACGTAATATCCACTTTTATAATCTTACTACACA AGGGTGCGCACGGGCGATGAGCGCTAACCCCCGAACGTCCCTTGACCTAA ACACCGAAACCTTACAACCTCGTTCCTCCCTTGAACCCCTTGAACCTGCT TGAAACGCTAATGGTATCATTGCTTCACGAAATCTCGAATTTGCTGCTGG TTGTTGCTGCTTGCCTCTGCCCTTTCACCATTAATCACCGCAACTATGGG AGAAGCAGATCTGCTCGGGACGACGGGTGTGAGTTCGCAAATTGGACGAC GTGGCCCAACTCCCTGCTCGCACACCGCCTGCTGAAGTTTGCCTCGGACG CAGGAAAAGCGGACGAGGTACAGGACAAAGAAAAATACTACCACGCAGTT ATCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig114197:689..1594-

>mRNA_H-elongata_contig114197.1135.1 ID=mRNA_H-elongata_contig114197.1135.1|Name=mRNA_H-elongata_contig114197.1135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig114197:689..1594- (Himanthalia elongata Himel1 dioecious)
ACATGTTTTAGGTGTTATGTTGGCAAGGCGCGCCTCGACAAGGCGGTGGT
GGAGTACGAGCGATCGCACCCCGACGCAAGCGTGCGCGTCACCTTCAGCC
CCTACATGATTGACAAAAACACGCGCCCCGGTGGTGAGGAGTACCTCGCG
TACAACAGGCGGCGGTGGGGAGGGGACGGGTGGACATCGTCCCTCAAGAG
ACATGTTTTAGGTGTTATGTTGGCAAGGCGCGCCTCGACAAGGCGGTGGT
GGAGTACGAGCGATCGCACCCCGACGCAAGCGTGCGCGTCACCTTCAGCC
CCTACATGATTGACAAAAACACGCGCCCCGGTGGTGAGGAGTACCTCGCG
TACAACAGGCGGCGGTGGGGAGGGGACGGGTGGACATCGTCCCTCAAGAG
ATCTGCTCGGGACGACGGGTGTGAGTTCGCAAATTGGACGACGTGGCCCA
ACTCCCTGCTCGCACACCGCCTGCTGAAGTTTGCCTCGGACGCAGGAAAA
GCGGACGAGGTACAGGACAAAGAAAAATACTACCACGCAGTTATCTAGAT
CTGCTCGGGACGACGGGTGTGAGTTCGCAAATTGGACGACGTGGCCCAAC
TCCCTGCTCGCACACCGCCTGCTGAAGTTTGCCTCGGACGCAGGAAAAGC
GGACGAGGTACAGGACAAAGAAAAATACTACCACGCAGTTATCTAG
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