mRNA_H-elongata_contig114034.1120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114034.1120.1
Unique NamemRNA_H-elongata_contig114034.1120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: D8LB99_ECTSI (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB99_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.550e-37
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 IRQRGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESRR 309
            + + G  VVAIDFPGHGRS  +S DA Y  L+Y EY+IEAAR LGW +FS+VGHSMG      +AASFPEM+ERCVF+D +GPF+    +SPKLLR S+ SRR
Sbjct:   60 LAKEGFEVVAIDFPGHGRSDHMSKDAWYPILDYPEYVIEAARSLGWEKFSMVGHSMGGAVASLVAASFPEMVERCVFLDILGPFASRTGTSPKLLRASVASRR 162          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: A0A6H5KEN7_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.540e-26
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   64 LSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESRR 309
            +S DA Y  L+Y EY+IEAAR LGW +FS+VGHSMG      +AASFPEM+ERCVF+D +GPF+    +SPKLLR S+ SRR
Sbjct:    1 MSKDAWYPVLDYPEYVIEAARSLGWEKFSMVGHSMGGAVASLVAASFPEMVERCVFLDILGPFASRTGTSPKLLRASVASRR 82          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: UPI00201D493B (alpha/beta hydrolase n=2 Tax=Pseudomonas TaxID=286 RepID=UPI00201D493B)

HSP 1 Score: 89.7 bits (221), Expect = 2.280e-19
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   10 RGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESR 306
            RG+ +VA+DF GHG S      A Y   +Y   ++ AA  LGWPRFSL+GHSMG+   V LAA+FPE ++R   ID + P +   D++   L  ++  R
Sbjct:   51 RGLRIVAVDFAGHGHSAHRPPGAGYALWDYVHDVLLAAEQLGWPRFSLLGHSMGAIVSVLLAATFPERVQRLALIDGLVPPTVEADAAVATLAEALRGR 149          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: UPI001C7F408F (alpha/beta hydrolase n=1 Tax=Pseudomonas sp. NCCP-436 TaxID=2842481 RepID=UPI001C7F408F)

HSP 1 Score: 89.4 bits (220), Expect = 3.190e-19
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    4 RQRGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESR 306
            R  G+ +VA+DFPGHG S      A Y   +Y   +++ A   GWPRF+L+GHSMG+   V LAA+ PE + R   ID + P++   D +P  L  ++ +R
Sbjct:   49 RLEGLRIVALDFPGHGHSEHRPEGAGYALWDYAYDVLQVAEQFGWPRFALLGHSMGAITAVLLAAALPERVSRLALIDGLMPYTSEPDEAPVKLGEALRAR 149          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: UPI00140C216E (alpha/beta hydrolase n=1 Tax=Lysobacter telluris TaxID=1104775 RepID=UPI00140C216E)

HSP 1 Score: 84.7 bits (208), Expect = 2.140e-17
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   10 RGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESRR 309
            +GI +V  D PGHGRS  L+  A+Y +      +++ A  LGWPRF+L+GHSMG+  G  LAA+ PE IER V I+A+G  +   + + + +R ++ + R
Sbjct:   61 QGIELVVPDLPGHGRSAHLAAGADYSFAGAVNAVLDIADALGWPRFALLGHSMGAGIGSLLAAACPERIERFVAIEALGALAETPERTVQRMRDAVAATR 160          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: UPI001C3177FE (alpha/beta hydrolase n=1 Tax=Rheinheimera sp. SM2107 TaxID=2848612 RepID=UPI001C3177FE)

HSP 1 Score: 84.3 bits (207), Expect = 2.470e-17
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   16 IHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESR 306
            + ++A+DFPGHG+S   S+DA+Y + ++ E ++   +  GW + +++GHSMG      LAA+FPE++ R V ID++G F    +SS + LR+ I SR
Sbjct:   57 LPLLALDFPGHGKSAARSSDAHYYFFDWVEDLVALCQQQGWQQLTIIGHSMGGMVATALAAAFPELVARLVLIDSLG-FVTADNSSSEQLRQGIISR 152          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: A0A7S0CEP3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CEP3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.740e-17
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   16 IHVVAIDFPGHGRSGPLSNDANYMYL-NYTEYIIEAARWLGWP----RFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESR 306
              VVA+DFPGHGRS   S D     L  Y  Y+ EA R LGW     RF+L+GHSMG    +  AA+FPE +++ V ++  GP +     S K +R S ++R
Sbjct:   35 FEVVALDFPGHGRSSHKSKDGPTQVLFEYVFYVAEAVRQLGWDNPTERFTLIGHSMGGGVAIAYAAAFPERVDKLVLVEGFGPLARNAKDSSKHIRHSCQTR 136          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: A0A1H3DYA6_9PSED (Epoxide hydrolase. Serine peptidase. MEROPS family S33 n=2 Tax=Pseudomonas kuykendallii TaxID=1007099 RepID=A0A1H3DYA6_9PSED)

HSP 1 Score: 84.0 bits (206), Expect = 3.450e-17
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   13 GIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIES 303
            G+ VVA+DF GHG S   +  A Y   +Y   ++  A  LGWPRFSL+GHSMG+   V LA + P+ IER   ID + P+      +P+ L  ++++
Sbjct:   52 GMRVVALDFAGHGHSAHRAAGAGYQLWDYALDVLHVAEQLGWPRFSLLGHSMGAIVSVLLAGAMPQRIERLALIDGLIPYLGEAADAPRKLGEALQA 148          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: A0A1Q8TDI4_9GAMM (Alpha/beta hydrolase n=9 Tax=Halomonadaceae TaxID=28256 RepID=A0A1Q8TDI4_9GAMM)

HSP 1 Score: 84.0 bits (206), Expect = 3.720e-17
Identity = 42/108 (38.89%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 IRQRGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESRREQGNT 324
            + + GI +VAIDFPGHGRS P +   +Y    YT  +++A   LG  R  L+ HSMG+     +AA+ PE + R V ID +G  +  +D + K LR  +  RR   +T
Sbjct:   48 VERLGIRIVAIDFPGHGRSQPRAEGGDYPIWEYTLDVLDALDALGLDRAPLLAHSMGAAVSCLVAAAMPERVARLVLIDGLGTLTTEVDDTAKQLRMGLIQRRRSRST 155          
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Match: A0A1Q9Y9Q0_9PSED (Alpha/beta hydrolase n=3 Tax=unclassified Pseudomonas TaxID=196821 RepID=A0A1Q9Y9Q0_9PSED)

HSP 1 Score: 83.6 bits (205), Expect = 4.810e-17
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   10 RGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFSLVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIESR 306
            +G+ +VA+DF GHG S      A Y   +Y   ++  A  L WPRFSL+GHSMG+   V LAA+FPE ++R   ID + P +   D +   L  ++  R
Sbjct:   51 QGLRIVAVDFAGHGHSAHRPAGAGYALWDYVHDVLLVAEQLDWPRFSLLGHSMGAIVSVLLAATFPERVQRLALIDGLVPPTIEADGAVATLAEALRGR 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114034.1120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB99_ECTSI4.550e-3761.17AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A6H5KEN7_9PHAE6.540e-2660.98AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
UPI00201D493B2.280e-1942.42alpha/beta hydrolase n=2 Tax=Pseudomonas TaxID=286... [more]
UPI001C7F408F3.190e-1939.60alpha/beta hydrolase n=1 Tax=Pseudomonas sp. NCCP-... [more]
UPI00140C216E2.140e-1741.00alpha/beta hydrolase n=1 Tax=Lysobacter telluris T... [more]
UPI001C3177FE2.470e-1740.21alpha/beta hydrolase n=1 Tax=Rheinheimera sp. SM21... [more]
A0A7S0CEP3_9STRA2.740e-1742.16Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1H3DYA6_9PSED3.450e-1740.21Epoxide hydrolase. Serine peptidase. MEROPS family... [more]
A0A1Q8TDI4_9GAMM3.720e-1738.89Alpha/beta hydrolase n=9 Tax=Halomonadaceae TaxID=... [more]
A0A1Q9Y9Q0_9PSED4.810e-1739.39Alpha/beta hydrolase n=3 Tax=unclassified Pseudomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114034contigH-elongata_contig114034:24..780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog2880.D8LB99
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.082328-CDS-H-elongata_contig114034:23..2281622929658.082328-CDS-H-elongata_contig114034:23..228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114034 24..228 -
1691679108.6496596-CDS-H-elongata_contig114034:23..2281691679108.6496596-CDS-H-elongata_contig114034:23..228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114034 24..228 -
1622929658.0975096-CDS-H-elongata_contig114034:655..7801622929658.0975096-CDS-H-elongata_contig114034:655..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114034 656..780 -
1691679108.660643-CDS-H-elongata_contig114034:655..7801691679108.660643-CDS-H-elongata_contig114034:655..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114034 656..780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114034.1120.1prot_H-elongata_contig114034.1120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114034 24..780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114034.1120.1

>prot_H-elongata_contig114034.1120.1 ID=prot_H-elongata_contig114034.1120.1|Name=mRNA_H-elongata_contig114034.1120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
IRQRGIHVVAIDFPGHGRSGPLSNDANYMYLNYTEYIIEAARWLGWPRFS
LVGHSMGSWAGVFLAASFPEMIERCVFIDAIGPFSYPLDSSPKLLRRSIE
SRREQGNTKR
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mRNA from alignment at H-elongata_contig114034:24..780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114034.1120.1 ID=mRNA_H-elongata_contig114034.1120.1|Name=mRNA_H-elongata_contig114034.1120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=757bp|location=Sequence derived from alignment at H-elongata_contig114034:24..780- (Himanthalia elongata Himel1 dioecious)
ATACGACAGAGAGGGATTCACGTCGTGGCGATCGACTTCCCGGGGCACGG AAGATCAGGGCCCTTGAGCAATGATGCCAACTACATGTATCTCAACTACA CCGAGTACATCATCGAGGCTGCCAGGTGAGAACAGCTGTCGACCGACTGG TCGATCGTCCTACCGACCTACCGACGTACTTGGATGATAGGAGGAGGTGT GACTCGACGGTTGTCCGCGATGGTGGTGTGGCCAACTAAGGACAGCGACA GTCTTTGTAGAGCGTTTTCCCCCCAAGAAGCCGGTGGACGGTCTGTAGAG GTACTGGCCTCGCCCGTTTCGCGGATAGCGACAGGGCTTTTGTCGCAAAC GGCGACAGTGCCTTGACATCTTCCTGTAGATCGGGAAGCGTAGCCGCGGC GCACGTTGGCGGGGGTGTCGTACATTATAGTGCTAAATGGTATAGTAAGG ATCACCGGCAGTGGGGCACTTCGGAAGATCGCACTCGCCTTGCGCCGATG GCTCCACCCCCTAACCCGTTTCATTGTTCATCGTCATCTTCCGTCTCCTA AGGTGGCTGGGTTGGCCACGATTCTCGCTCGTTGGTCATTCTATGGGAAG TTGGGCAGGAGTATTTTTAGCAGCCAGCTTCCCGGAGATGATAGAGCGGT GCGTCTTCATCGACGCCATCGGGCCCTTCTCCTACCCCCTTGACTCATCG CCCAAGCTGCTGCGACGGAGCATCGAGTCCCGGCGTGAGCAAGGAAATAC TAAACGT
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Coding sequence (CDS) from alignment at H-elongata_contig114034:24..780-

>mRNA_H-elongata_contig114034.1120.1 ID=mRNA_H-elongata_contig114034.1120.1|Name=mRNA_H-elongata_contig114034.1120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig114034:24..780- (Himanthalia elongata Himel1 dioecious)
ATACGACAGAGAGGGATTCACGTCGTGGCGATCGACTTCCCGGGGCACGG
AAGATCAGGGCCCTTGAGCAATGATGCCAACTACATGTATCTCAACTACA
CCGAGTACATCATCGAGGCTGCCAGATACGACAGAGAGGGATTCACGTCG
TGGCGATCGACTTCCCGGGGCACGGAAGATCAGGGCCCTTGAGCAATGAT
GCCAACTACATGTATCTCAACTACACCGAGTACATCATCGAGGCTGCCAG
GTGGCTGGGTTGGCCACGATTCTCGCTCGTTGGTCATTCTATGGGAAGTT
GGGCAGGAGTATTTTTAGCAGCCAGCTTCCCGGAGATGATAGAGCGGTGC
GTCTTCATCGACGCCATCGGGCCCTTCTCCTACCCCCTTGACTCATCGCC
CAAGCTGCTGCGACGGAGCATCGAGTCCCGGCGTGAGCAAGGAAATACTA
AACGTGTGGCTGGGTTGGCCACGATTCTCGCTCGTTGGTCATTCTATGGG
AAGTTGGGCAGGAGTATTTTTAGCAGCCAGCTTCCCGGAGATGATAGAGC
GGTGCGTCTTCATCGACGCCATCGGGCCCTTCTCCTACCCCCTTGACTCA
TCGCCCAAGCTGCTGCGACGGAGCATCGAGTCCCGGCGTGAGCAAGGAAA
TACTAAACGT
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