mRNA_H-elongata_contig114023.1119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114023.1119.1
Unique NamemRNA_H-elongata_contig114023.1119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig114023.1119.1 vs. uniprot
Match: D7FJY9_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJY9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.310e-21
Identity = 90/159 (56.60%), Postives = 99/159 (62.26%), Query Frame = 1 
Query:    1 RLITYLAFLWINLTLGWSIL--------PGSIFYRGWFLLLLGIMTTLSLVSLTTTDPGSVRSSESNQPYAGSNAASEGGNQSAQVR--------ARASYSSCGEARESCQQYFTQFCSLCNYAKPERAHHXXXXXXXXXXXXXXXXXXXXXVGAGNYK 429
            RL  YLAFLW N  LGW+ L        P S F+R W+LLLL  +TTLSLV+LTT DPG+VR S +    AGS+ +  G                A  S    G      QQYFTQ CSLCNY KP RAHHXXXXXXXXXXXXXXXXXXXXXVGAGNYK
Sbjct:    4 RLAGYLAFLWANAALGWTFLRESAAGGTPLSAFFRAWWLLLLSALTTLSLVTLTTKDPGNVRKSTA---QAGSSPSGMGXXXXXXXXXXXXQLCPASGSLEGAGGGLAQQQQYFTQVCSLCNYLKPARAHHXXXXXXXXXXXXXXXXXXXXXVGAGNYK 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114023.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY9_ECTSI6.310e-2156.60Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114023contigH-elongata_contig114023:256..1592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.5e-18
Seed eggNOG ortholog2880.D7FJY9
KEGG rclassRC01904
KEGG koko:K14423,ko:K20028
KEGG ReactionR07482
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
GOsGO:0000138,GO:0000254,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005802,GO:0006629,GO:0006694,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0010150,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016417,GO:0016491,GO:0016705,GO:0016709,GO:0016740,GO:0016746,GO:0016747,GO:0019222,GO:0019707,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0055114,GO:0065007,GO:0071704,GO:0090693,GO:0097708,GO:0098791,GO:0098827,GO:0099402,GO:0140096,GO:1900055,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:2000024,GO:2000026,GO:2000377
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1315@2759
EC2.3.1.225
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal peptide
Exons3
Model size429
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114023.1119.1prot_H-elongata_contig114023.1119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114023 256..1592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.9926221-CDS-H-elongata_contig114023:255..3221622929657.9926221-CDS-H-elongata_contig114023:255..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114023 256..322 -
1691679108.6194522-CDS-H-elongata_contig114023:255..3221691679108.6194522-CDS-H-elongata_contig114023:255..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114023 256..322 -
1622929658.0079994-CDS-H-elongata_contig114023:928..10081622929658.0079994-CDS-H-elongata_contig114023:928..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114023 929..1008 -
1691679108.630592-CDS-H-elongata_contig114023:928..10081691679108.630592-CDS-H-elongata_contig114023:928..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114023 929..1008 -
1622929658.0238452-CDS-H-elongata_contig114023:1310..15921622929658.0238452-CDS-H-elongata_contig114023:1310..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114023 1311..1592 -
1691679108.6398084-CDS-H-elongata_contig114023:1310..15921691679108.6398084-CDS-H-elongata_contig114023:1310..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114023 1311..1592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114023.1119.1

>prot_H-elongata_contig114023.1119.1 ID=prot_H-elongata_contig114023.1119.1|Name=mRNA_H-elongata_contig114023.1119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
RLITYLAFLWINLTLGWSILPGSIFYRGWFLLLLGIMTTLSLVSLTTTDP
GSVRSSESNQPYAGSNAASEGGNQSAQVRARASYSSCGEARESCQQYFTQ
FCSLCNYAKPERAHHCRICNRCVLKMDHHCRWVGRCVGAGNYK
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mRNA from alignment at H-elongata_contig114023:256..1592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114023.1119.1 ID=mRNA_H-elongata_contig114023.1119.1|Name=mRNA_H-elongata_contig114023.1119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-elongata_contig114023:256..1592- (Himanthalia elongata Himel1 dioecious)
AGGTTAATCACGTACCTCGCCTTCTTGTGGATCAACCTTACGCTGGGGTG
GTCAATTCTCCCCGGAAGCATTTTTTACCGCGGGTGGTTCCTGTTGCTGT
TGGGAATCATGACGACGCTTTCCCTTGTCTCGCTGACCACGACGGACCCT
GGGAGTGTACGATCGTCGGAATCCAACCAACCGTATGCCGGGTCCAACGC
CGCTTCGGAAGGGGGCAACCAGTCGGCTCAGGTGCGTGCGCGCGCGTCTT
ATAGTTCATGTGGGGAGGCTAGGGAGTCGTGTGTCACGTCGTGGCGTGAT
CGTGTGGCTTTGCTTTCAAGCAAAAGATGCGGGTGATGTGTACCAGGCCG
TGCAAAATGCCAAGAAAATCTTCGGCCCCGCGGCGAAAGGTTGCCGCCGA
CAATCAATCGCGCGTAATTTTCTTGCCTCAATATTTTTCCCGCCTTATCC
TCCCCAAATCGACAATGATGCATTCTTCCTTCTGCTCTTTACGTCCACTC
TGTCGCGTGTATCTTTGTTTGCCTATTCTGGGTGGTGTATTTTTTTCATG
ATTTTTACATCTTGCCCTGGTGACGTCCTCGCAGCAACAATACTTCACCC
AGTTCTGCTCGCTCTGCAACTACGCGAAGCCGGAGAGGGCGCATCACTGC
CGCATCTGCAACAGGTATTGTACACGACCGGTGATTGCTTTATTTCGTTT
TGTTTTTGTTTTGTTTCTCCTTGTCTAGTGTTGTTTTGTTCTTTACTGAA
TGTCGATGGCACCAACCCACATCCAAGGCTTGTTTTGTTACCCATCAATT
TCCATACATGATGTCTAATACTGTATCGTGTAAAGGATTGATTTGCCCCC
GGTTCGAAAACGCCTTCAACCTTTTCGTGATTATGATCACACAAGTTCAG
CCACTCTTCACACCCCTCGTCAACCTTCGGTAAACGCTTCCTATGGTTGA
AGTTTGCTCTACTCCCCCTCTCTTACAATAGTAATAATTATACATATTTA
ATAGTCATAGTCGCTGCAGAAACCACGGAACAACCCATTCTTGGTGGAAT
CGAACTCACGACTTCTGCACGATAATATTCAATTTCTGCACGATAATAAG
TTACTTATGAGTTATAGTAATTAACAGTAACAGTATAGTAGTGCTGTACA
TTAGACGGCATAGCACGTCGCCATCGGCGGAGCGACAGCACGCACCGCAC
CCCCTTCCACCAACCCAGACGCACGCGCACGCTCGTATGCTGAACACGCA
CGAATTTTACCAAAATACAGATGTGTCTTGAAGATGGATCACCATTGCCG
CTGGGTGGGGCGATGCGTGGGAGCGGGCAACTACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig114023:256..1592-

>mRNA_H-elongata_contig114023.1119.1 ID=mRNA_H-elongata_contig114023.1119.1|Name=mRNA_H-elongata_contig114023.1119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig114023:256..1592- (Himanthalia elongata Himel1 dioecious)
AGGTTAATCACGTACCTCGCCTTCTTGTGGATCAACCTTACGCTGGGGTG
GTCAATTCTCCCCGGAAGCATTTTTTACCGCGGGTGGTTCCTGTTGCTGT
TGGGAATCATGACGACGCTTTCCCTTGTCTCGCTGACCACGACGGACCCT
GGGAGTGTACGATCGTCGGAATCCAACCAACCGTATGCCGGGTCCAACGC
CGCTTCGGAAGGGGGCAACCAGTCGGCTCAGGTGCGTGCGCGCGCGTCTT
ATAGTTCATGTGGGGAGGCTAGGGAGTCGTGTAGGTTAATCACGTACCTC
GCCTTCTTGTGGATCAACCTTACGCTGGGGTGGTCAATTCTCCCCGGAAG
CATTTTTTACCGCGGGTGGTTCCTGTTGCTGTTGGGAATCATGACGACGC
TTTCCCTTGTCTCGCTGACCACGACGGACCCTGGGAGTGTACGATCGTCG
GAATCCAACCAACCGTATGCCGGGTCCAACGCCGCTTCGGAAGGGGGCAA
CCAGTCGGCTCAGGTGCGTGCGCGCGCGTCTTATAGTTCATGTGGGGAGG
CTAGGGAGTCGTGTCAACAATACTTCACCCAGTTCTGCTCGCTCTGCAAC
TACGCGAAGCCGGAGAGGGCGCATCACTGCCGCATCTGCAACAGCAACAA
TACTTCACCCAGTTCTGCTCGCTCTGCAACTACGCGAAGCCGGAGAGGGC
GCATCACTGCCGCATCTGCAACAGATGTGTCTTGAAGATGGATCACCATT
GCCGCTGGGTGGGGCGATGCGTGGGAGCGGGCAACTACAAGATGTGTCTT
GAAGATGGATCACCATTGCCGCTGGGTGGGGCGATGCGTGGGAGCGGGCA
ACTACAAG
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