mRNA_H-elongata_contig11401.1117.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11401.1117.1
Unique NamemRNA_H-elongata_contig11401.1117.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: D7FGR1_ECTSI (OTU domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.000e-27
Identity = 62/90 (68.89%), Postives = 77/90 (85.56%), Query Frame = 3 
Query:   30 MGKNAGKKGAGHARQSNKAKERAEKARLKKERHRNSYYSD-AEDREFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV 296
            MGK+  ++G+   +Q++KAKER E+ARL+K+R RNS YS  A+DR+FEAQVEQIGCKIKFI GDGNCLFRSLADQLEG+ E+H+S RAKV
Sbjct:    1 MGKHGKQRGSAAGQQADKAKERNERARLRKDRMRNSLYSSSADDRDFEAQVEQIGCKIKFIQGDGNCLFRSLADQLEGRSEDHSSVRAKV 90
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BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: A0A6V1PSA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PSA8_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 7.110e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  129 RNSYYSDAEDREFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV 296
            +N Y  D EDR+F  Q+  IGC+IKFI+GDGNC+FRS+ADQ+EG PE H  +R ++
Sbjct:   46 KNGY--DDEDRKFALQLASIGCRIKFISGDGNCMFRSIADQIEGNPENHRDFRNRI 99
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BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: F4QFF3_CAVFA (OTU domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QFF3_CAVFA)

HSP 1 Score: 72.0 bits (175), Expect = 1.610e-10
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:   30 MGKNAGKKGAGHARQSNKAKERAEKARLKKERHRNSYYSDAEDREFEAQVEQI---GCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKVSAVFG 311
            MGK   K+ AG    SNK  +RA KA L+K  HR  +  +   + F A ++Q+   G  IK +AGDGNCLFR++ADQLE  PE+H  YR  +    G
Sbjct:    1 MGK---KRNAGGNNNSNKQHDRAVKASLRKREHRLKHGDEKWKQSFNAFLQQLEPQGFYIKDVAGDGNCLFRAIADQLEDNPEQHMKYRQNIVRFIG 94
[Close]
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: A0A6D2LAE4_9BRAS (OTU domain-containing protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2LAE4_9BRAS)

HSP 1 Score: 64.3 bits (155), Expect = 6.120e-8
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:   84 AKERAEKARLKKERHRNSYYSDAED---REFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV 296
            AK + +K++ KK+ H+      A+D    +F AQ++ +G KI  +  DGNC FRS+ADQLEG  +EH+ YR+ V
Sbjct:    2 AKAKPQKSKPKKQPHQAKAKKQAKDGDMSQFRAQLDALGLKIIKVTSDGNCFFRSIADQLEGNEDEHSKYRSMV 75
[Close]
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: UPI001F041A77 (OTU domain-containing protein 3-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F041A77)

HSP 1 Score: 64.3 bits (155), Expect = 6.380e-8
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 3 
Query:   81 KAKERAEKARLKKERHRNSYYSDAEDR-EFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV 296
            K  ERA +  LKKER    Y  + E+   F  Q++ IG KIK I GDGNCLFR+LADQL+G  ++H  +R  V
Sbjct:   27 KRDERARRNALKKEREAKEYLENDENFVSFSNQLKVIGYKIKDIKGDGNCLFRALADQLDGSDDDHLQHRKIV 99
[Close]
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: F0ZUC3_DICPU (OTU domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZUC3_DICPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-7
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:   75 SNKAKERAEKARLKKERHRNSYYSDAEDR---EFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV 296
            SNK  +R  KA L++ R R  +  +   +   +FE Q+  +G  IK +AGDGNCLFRS+ADQLE  P +H  YR  +
Sbjct:   16 SNKRVDREVKASLRRRRERLKHGGETWKKGIQKFEEQLNPLGLYIKDVAGDGNCLFRSIADQLEESPNQHRKYRDNI 92
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BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: A0A7D9I5X7_PARCT (OTU domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I5X7_PARCT)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-7
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:   81 KAKERAEKARLKKERHRNSYYSDAEDR-EFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKVS 299
            K  ERA +  L+KER    Y  + E+   F  Q+E +G KIK I GDGNCLFR+LADQL+G  + H  YR  ++
Sbjct:   24 KRDERARRNALRKEREAKEYLENDENFVAFSNQLEALGYKIKDIKGDGNCLFRALADQLDGTDDGHLRYRRIIA 97
[Close]
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: A0A8J4UX53_9MYCE (OTU domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UX53_9MYCE)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-7
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:   30 MGK-NAGKKGAGHARQSNKAKERAEKARLKKERHRNSYYSDAEDRE----FEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV-------SAVFGPF 317
            MGK N  K+  G    + K  +R  KA L+K + R  +  D + R+    F AQ+E +G  IK +AGDGNCLFRS+ADQLE  P  H  YR  +         +F PF
Sbjct:    1 MGKGNKSKQRGGPGGGNGKKNDRMVKAALRKRKERLKH-GDEKWRQGIKAFSAQLEPMGLIIKDVAGDGNCLFRSIADQLEDNPNSHMKYRQAICKFLIANKEMFAPF 107
[Close]
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: A0A6B2L5Q9_9EUKA (OTU domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5Q9_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 2.080e-7
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 3 
Query:   81 KAKERAEKARLKKERHRNSYYSDAE-DREFEAQVEQI---GCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKV 296
            K +ER  K +++KER + +Y  DAE  REF+  ++Q+   G  I+ +AGDGNCLFR++ADQ +G P +H  YR  +
Sbjct:   14 KKQERLTKQQIRKERSKKTY-GDAEWKREFDLFLDQLKIHGLTIRDVAGDGNCLFRAMADQFDGDPNKHPIYRTGI 88
[Close]
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Match: UPI00106A21B1 (OTU domain-containing protein 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A21B1)

HSP 1 Score: 62.8 bits (151), Expect = 2.150e-7
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:   81 KAKERAEKARLKKERHRNSYYSDAEDR-EFEAQVEQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKVS 299
            K  ERA +  L+KER    Y  + E+   F  Q++ +G KIK I GDGNCLFR+LADQL+G  + H  YR  ++
Sbjct:   20 KRDERARRNALRKEREAKEYLENDENFVSFSNQLQALGYKIKDIKGDGNCLFRALADQLDGTDDGHLRYRRIIA 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11401.1117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGR1_ECTSI2.000e-2768.89OTU domain-containing protein, putative n=1 Tax=Ec... [more]
A0A6V1PSA8_HETAK7.110e-1257.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F4QFF3_CAVFA1.610e-1044.33OTU domain-containing protein n=1 Tax=Cavenderia f... [more]
A0A6D2LAE4_9BRAS6.120e-843.24OTU domain-containing protein n=4 Tax=Coluteocarpe... [more]
UPI001F041A776.380e-849.32OTU domain-containing protein 3-like n=1 Tax=Xenia... [more]
F0ZUC3_DICPU1.170e-744.16OTU domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A7D9I5X7_PARCT1.240e-747.30OTU domain-containing protein n=1 Tax=Paramuricea ... [more]
A0A8J4UX53_9MYCE1.500e-740.74OTU domain-containing protein n=1 Tax=Polysphondyl... [more]
A0A6B2L5Q9_9EUKA2.080e-744.74OTU domain-containing protein n=1 Tax=Arcella inte... [more]
UPI00106A21B12.150e-745.95OTU domain-containing protein 3-like n=1 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11401contigH-elongata_contig11401:6712..7952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue4.5e-24
Seed eggNOG ortholog2880.D7FGR1
Preferred nameotud3
KEGG koko:K13717
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
Ec32 ortholog descriptionSEC-C motif
Ec32 orthologEc-04_001190.1
EC3.4.19.12
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size938
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11401.1117.1prot_H-elongata_contig11401.1117.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11401 7252..7923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.7904642-UTR-H-elongata_contig11401:6711..72511622929657.7904642-UTR-H-elongata_contig11401:6711..7251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 6712..7251 -
1691679108.5528934-UTR-H-elongata_contig11401:6711..72511691679108.5528934-UTR-H-elongata_contig11401:6711..7251Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 6712..7251 -
1622929657.892364-UTR-H-elongata_contig11401:7923..79521622929657.892364-UTR-H-elongata_contig11401:7923..7952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 7924..7952 -
1691679108.583529-UTR-H-elongata_contig11401:7923..79521691679108.583529-UTR-H-elongata_contig11401:7923..7952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11401 7924..7952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.8089008-CDS-H-elongata_contig11401:7251..74731622929657.8089008-CDS-H-elongata_contig11401:7251..7473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 7252..7473 -
1691679108.5652404-CDS-H-elongata_contig11401:7251..74731691679108.5652404-CDS-H-elongata_contig11401:7251..7473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 7252..7473 -
1622929657.8261745-CDS-H-elongata_contig11401:7776..79231622929657.8261745-CDS-H-elongata_contig11401:7776..7923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 7777..7923 -
1691679108.5742974-CDS-H-elongata_contig11401:7776..79231691679108.5742974-CDS-H-elongata_contig11401:7776..7923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11401 7777..7923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11401.1117.1

>prot_H-elongata_contig11401.1117.1 ID=prot_H-elongata_contig11401.1117.1|Name=mRNA_H-elongata_contig11401.1117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MGKNAGKKGAGHARQSNKAKERAEKARLKKERHRNSYYSDAEDREFEAQV
EQIGCKIKFIAGDGNCLFRSLADQLEGKPEEHASYRAKVSAVFGPFPPLA
PPSSTRATKVEARGSVSLATFR*
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mRNA from alignment at H-elongata_contig11401:6712..7952-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11401.1117.1 ID=mRNA_H-elongata_contig11401.1117.1|Name=mRNA_H-elongata_contig11401.1117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1241bp|location=Sequence derived from alignment at H-elongata_contig11401:6712..7952- (Himanthalia elongata Himel1 dioecious)
GAGGCTGTAGATGTCGACTGAGTTGTGGTATGGGGAAGAATGCGGGAAAG
AAAGGCGCTGGACATGCGAGACAATCAAACAAGGCAAAAGAGAGGGCCGA
GAAAGCCAGACTCAAGAAGGAACGCCATCGAAATTCGTACTACTCCGATG
CCGAAGACAGAGAATTCGAGGCGCAGGTGAATAACCAAAAGCAATTGAAT
GTGTAGCCACAGCAGCCGCAGCGAATAACACAAGCTGTGGGTACGGCTAG
AGCTAGGCTCTAGAACTACTTCAACGGATCATTAGTAAGTCTTTTAAATA
AAAATATAGACCAGGTTGTGCAAGTCATCGGACCCAAACAATCTTCGCCT
CGACTTTGTCGCGGTGGTAAAGGCGTCAGGCGTCAAGAGTGGTGGATGCA
GTGGCGAGAGTAAAATTTCACAATGCCCCCGAGTTGCGAAGCTTCCTTAC
TTTCAAATCGCGACGCGAATGGTGCGCAGGTAGAGCAGATTGGGTGCAAG
ATCAAATTCATTGCGGGAGATGGCAACTGCCTCTTCCGGAGTCTCGCCGA
CCAGCTGGAAGGGAAGCCGGAGGAGCACGCTTCGTACAGAGCAAAGGTAT
CGGCTGTTTTCGGGCCATTTCCTCCTCTAGCCCCTCCGTCGAGTACTCGT
GCTACCAAGGTTGAGGCACGAGGATCTGTTTCACTAGCAACGTTTCGTTA
ATCTGAAAGCCGCTAGCCCAGCAAATATTTTTCTTTTTCTTTTTTGTCTT
GAAAGTCATGACTCGGAGCACTTGGTTGAGGGCGTCTTGTGCCTCCTATC
CAGAAGAATCCCTCTCTGGAACAATCTGTATCAACTAAAGATTGTGCAAC
TGTCGTCTGCTGCCAAATAAAAAGGCGTGAGAGGTATTCAGGTATCTATT
TCGAGTCAAGCCCGTCCGGTTGTCCGCGGGAGATAGCGCTCTTTCTAGGT
ATATTACAGCACCTTGCGTTCCGGTGGCGTGTAGATCGAGCGATTTCAAA
GTTCAAGAGTGAAACGCTCAAGGCTTGTCGCCATTCAACAGTCGACAAGC
AGATTCTCCTATACTGTACTGTTATAATAACAGAAAGCAAATGACGACAT
CGGAATAAATTCGGTACTGAAGAAGAGCTGCCCAACTACTCCTCTACAGT
GCACAACCCCATGTCACTTATCGCGTGAAGTTGTCTGTTATCGTGCTAAA
CTATTGTTTCCTTTTGTATGGAGAGTATGGTGTACATTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig11401:6712..7952-

>mRNA_H-elongata_contig11401.1117.1 ID=mRNA_H-elongata_contig11401.1117.1|Name=mRNA_H-elongata_contig11401.1117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig11401:6712..7952- (Himanthalia elongata Himel1 dioecious)
ATGGGGAAGAATGCGGGAAAGAAAGGCGCTGGACATGCGAGACAATCAAA
CAAGGCAAAAGAGAGGGCCGAGAAAGCCAGACTCAAGAAGGAACGCCATC
GAAATTCGTACTACTCCGATGCCGAAGACAGAGAATTCGAGGCGCAGATG
GGGAAGAATGCGGGAAAGAAAGGCGCTGGACATGCGAGACAATCAAACAA
GGCAAAAGAGAGGGCCGAGAAAGCCAGACTCAAGAAGGAACGCCATCGAA
ATTCGTACTACTCCGATGCCGAAGACAGAGAATTCGAGGCGCAGGTAGAG
CAGATTGGGTGCAAGATCAAATTCATTGCGGGAGATGGCAACTGCCTCTT
CCGGAGTCTCGCCGACCAGCTGGAAGGGAAGCCGGAGGAGCACGCTTCGT
ACAGAGCAAAGGTATCGGCTGTTTTCGGGCCATTTCCTCCTCTAGCCCCT
CCGTCGAGTACTCGTGCTACCAAGGTTGAGGCACGAGGATCTGTTTCACT
AGCAACGTTTCGTTAAGTAGAGCAGATTGGGTGCAAGATCAAATTCATTG
CGGGAGATGGCAACTGCCTCTTCCGGAGTCTCGCCGACCAGCTGGAAGGG
AAGCCGGAGGAGCACGCTTCGTACAGAGCAAAGGTATCGGCTGTTTTCGG
GCCATTTCCTCCTCTAGCCCCTCCGTCGAGTACTCGTGCTACCAAGGTTG
AGGCACGAGGATCTGTTTCACTAGCAACGTTTCGTTAA
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