mRNA_H-elongata_contig113975.1112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113975.1112.1
Unique NamemRNA_H-elongata_contig113975.1112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113975.1112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113975contigH-elongata_contig113975:1612..2113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.9528692-UTR-H-elongata_contig113975:1611..16301622929656.9528692-UTR-H-elongata_contig113975:1611..1630Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113975 1612..1630 +
1691679108.2686055-UTR-H-elongata_contig113975:1611..16301691679108.2686055-UTR-H-elongata_contig113975:1611..1630Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113975 1612..1630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.972159-CDS-H-elongata_contig113975:1630..21131622929656.972159-CDS-H-elongata_contig113975:1630..2113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113975 1631..2113 +
1691679108.2760422-CDS-H-elongata_contig113975:1630..21131691679108.2760422-CDS-H-elongata_contig113975:1630..2113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113975 1631..2113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113975.1112.1prot_H-elongata_contig113975.1112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113975 1631..2113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113975.1112.1

>prot_H-elongata_contig113975.1112.1 ID=prot_H-elongata_contig113975.1112.1|Name=mRNA_H-elongata_contig113975.1112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MTRDDMTSSFRRWRECECECGCVVENVLPYFMSFSQSLVDCSSMCIRSID
VSQIAAACSHAHPTQTHAHIHAHMHMHYVALEYLLIDTPVPFGESWHRIR
ESGGGGERTVLSIGSGPARIRAPTDSHFGIVFPPIDPDLTSRRVASPTAS
SVIFLCYLVTL
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mRNA from alignment at H-elongata_contig113975:1612..2113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113975.1112.1 ID=mRNA_H-elongata_contig113975.1112.1|Name=mRNA_H-elongata_contig113975.1112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=502bp|location=Sequence derived from alignment at H-elongata_contig113975:1612..2113+ (Himanthalia elongata Himel1 dioecious)
CACAGAAGTAGATGATGACATGACACGAGACGACATGACGTCATCGTTTA
GACGTTGGCGTGAATGTGAATGTGAATGTGGGTGTGTTGTGGAAAACGTA
TTGCCTTATTTTATGTCTTTTTCCCAAAGCCTCGTCGATTGCAGCAGCAT
GTGCATTCGCTCGATAGATGTCAGTCAGATTGCAGCAGCATGTTCACACG
CACACCCCACGCAAACCCACGCACACATACATGCACACATGCACATGCAC
TATGTTGCTTTGGAATATTTGTTGATCGACACTCCCGTCCCCTTCGGTGA
ATCGTGGCATCGGATAAGAGAGAGTGGGGGAGGGGGCGAGCGTACAGTGC
TGTCGATCGGGTCGGGCCCAGCGCGAATTCGGGCGCCAACCGACTCCCAT
TTCGGTATAGTATTTCCACCGATTGATCCTGACCTCACGTCGCGTCGCGT
CGCGTCACCCACCGCGTCAAGCGTTATTTTTTTATGCTATCTTGTTACAC
TC
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Coding sequence (CDS) from alignment at H-elongata_contig113975:1612..2113+

>mRNA_H-elongata_contig113975.1112.1 ID=mRNA_H-elongata_contig113975.1112.1|Name=mRNA_H-elongata_contig113975.1112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig113975:1612..2113+ (Himanthalia elongata Himel1 dioecious)
ATGACACGAGACGACATGACGTCATCGTTTAGACGTTGGCGTGAATGTGA
ATGTGAATGTGGGTGTGTTGTGGAAAACGTATTGCCTTATTTTATGTCTT
TTTCCCAAAGCCTCGTCGATTGCAGCAGCATGTGCATTCGCTCGATAGAT
GTCAGTCAGATTGCAGCAGCATGTTCACACGCACACCCCACGCAAACCCA
CGCACACATACATGCACACATGCACATGCACTATGTTGCTTTGGAATATT
TGTTGATCGACACTCCCGTCCCCTTCGGTGAATCGTGGCATCGGATAAGA
GAGAGTGGGGGAGGGGGCGAGCGTACAGTGCTGTCGATCGGGTCGGGCCC
AGCGCGAATTCGGGCGCCAACCGACTCCCATTTCGGTATAGTATTTCCAC
CGATTGATCCTGACCTCACGTCGCGTCGCGTCGCGTCACCCACCGCGTCA
AGCGTTATTTTTTTATGCTATCTTGTTACACTCATGACACGAGACGACAT
GACGTCATCGTTTAGACGTTGGCGTGAATGTGAATGTGAATGTGGGTGTG
TTGTGGAAAACGTATTGCCTTATTTTATGTCTTTTTCCCAAAGCCTCGTC
GATTGCAGCAGCATGTGCATTCGCTCGATAGATGTCAGTCAGATTGCAGC
AGCATGTTCACACGCACACCCCACGCAAACCCACGCACACATACATGCAC
ACATGCACATGCACTATGTTGCTTTGGAATATTTGTTGATCGACACTCCC
GTCCCCTTCGGTGAATCGTGGCATCGGATAAGAGAGAGTGGGGGAGGGGG
CGAGCGTACAGTGCTGTCGATCGGGTCGGGCCCAGCGCGAATTCGGGCGC
CAACCGACTCCCATTTCGGTATAGTATTTCCACCGATTGATCCTGACCTC
ACGTCGCGTCGCGTCGCGTCACCCACCGCGTCAAGCGTTATTTTTTTATG
CTATCTTGTTACACTC
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