mRNA_H-elongata_contig113970.1110.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113970.1110.1
Unique NamemRNA_H-elongata_contig113970.1110.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113970.1110.1 vs. uniprot
Match: D8LFL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL5_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.030e-51
Identity = 103/183 (56.28%), Postives = 123/183 (67.21%), Query Frame = 1 
Query:    1 DSTVIGNAVGNGGSGGGLWVEEGATATLDGSSRLLNNSAASSYTNXXXXXXXXXXXXXXXXXSDGCVLEGNVAGPEDVGETQPACLSGEGGAIFSSGSGISLVGVILRWNRCETGALDAGCSGGAVSIIGRGPDPGITAPAPAPASDSSFAPMGAGAIFEACVFEGNEARGSVTSSVYSGAGQ 549
            DS+ + NA G GGSGGG+WVE+GA A L   ++ +NN+AASSYT+                 S+GCVLEGNVAGPEDVG + P+CLSG+GG I  SGS I+L GV LR NRCETGALDAGCSGGAVS+ GRGP    TA A A               F+ C+FEGNEARG+ T++VYSGAGQ
Sbjct:   60 DSSFVANAAGKGGSGGGIWVEDGAKAVLA-RTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQ--ATA-AVAXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQ 238
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BLAST of mRNA_H-elongata_contig113970.1110.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.480e-48
Identity = 103/183 (56.28%), Postives = 123/183 (67.21%), Query Frame = 1 
Query:    1 DSTVIGNAVGNGGSGGGLWVEEGATATLDGSSRLLNNSAASSYTNXXXXXXXXXXXXXXXXXSDGCVLEGNVAGPEDVGETQPACLSGEGGAIFSSGSGISLVGVILRWNRCETGALDAGCSGGAVSIIGRGPDPGITAPAPAPASDSSFAPMGAGAIFEACVFEGNEARGSVTSSVYSGAGQ 549
            DS+ + NA G GGSGGG+WVE+GA A L   ++ +NN+AASSYT+                 S+GCVLEGNVAGPEDVG + P+CLSG+GG I  SGS I+L GV LR NRCETGALDAGCSGGAVS+ GRGP    TA A A               F+ C+FEGNEARG+ T++VYSGAGQ
Sbjct:  455 DSSFVANAAGKGGSGGGIWVEDGAKAVLA-RTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQ--ATA-AVAXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQ 633
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BLAST of mRNA_H-elongata_contig113970.1110.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 4.490e-34
Identity = 76/121 (62.81%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:  187 SDGCVLEGNVAGPEDVGETQPACLSGEGGAIFSSGSGISLVGVILRWNRCETGALDAGCSGGAVSIIGRGPDPGITAPAPAPASDSSFAPMGAGAIFEACVFEGNEARGSVTSSVYSGAGQ 549
            S+GCVLEGNVAGPEDVG + P+CLSG+GG I  SGS ISL GV +R NRCETGALDAGCSGGAVS+ GRGP    TA A               A F+ C+FE NEARG+ T++VYSGAGQ
Sbjct:    2 SEGCVLEGNVAGPEDVGASDPSCLSGQGGGIHVSGSAISLSGVSMRRNRCETGALDAGCSGGAVSLTGRGPQ-ATTAVA---GXXXXXXXXXXXATFDDCLFERNEARGAATNNVYSGAGQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113970.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFL5_ECTSI1.030e-5156.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH4_ECTSI1.480e-4856.28Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K5Q8_9PHAE4.490e-3462.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113970contigH-elongata_contig113970:228..1670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.9e-42
Seed eggNOG ortholog2880.D7FTH4
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-04_001770.1
Exons3
Model size564
Cds size564
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113970.1110.1prot_H-elongata_contig113970.1110.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113970 228..1670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.78167-CDS-H-elongata_contig113970:227..4551622929656.78167-CDS-H-elongata_contig113970:227..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113970 228..455 +
1691679108.2054386-CDS-H-elongata_contig113970:227..4551691679108.2054386-CDS-H-elongata_contig113970:227..455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113970 228..455 +
1622929656.804141-CDS-H-elongata_contig113970:1163..13991622929656.804141-CDS-H-elongata_contig113970:1163..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113970 1164..1399 +
1691679108.2181256-CDS-H-elongata_contig113970:1163..13991691679108.2181256-CDS-H-elongata_contig113970:1163..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113970 1164..1399 +
1622929656.8191483-CDS-H-elongata_contig113970:1570..16701622929656.8191483-CDS-H-elongata_contig113970:1570..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113970 1571..1670 +
1691679108.2257304-CDS-H-elongata_contig113970:1570..16701691679108.2257304-CDS-H-elongata_contig113970:1570..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113970 1571..1670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113970.1110.1

>prot_H-elongata_contig113970.1110.1 ID=prot_H-elongata_contig113970.1110.1|Name=mRNA_H-elongata_contig113970.1110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
DSTVIGNAVGNGGSGGGLWVEEGATATLDGSSRLLNNSAASSYTNRGAGG
GLAVSSSARITLSDGCVLEGNVAGPEDVGETQPACLSGEGGAIFSSGSGI
SLVGVILRWNRCETGALDAGCSGGAVSIIGRGPDPGITAPAPAPASDSSF
APMGAGAIFEACVFEGNEARGSVTSSVYSGAGQVRQT*
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mRNA from alignment at H-elongata_contig113970:228..1670+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113970.1110.1 ID=mRNA_H-elongata_contig113970.1110.1|Name=mRNA_H-elongata_contig113970.1110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig113970:228..1670+ (Himanthalia elongata Himel1 dioecious)
GATTCGACGGTCATTGGCAACGCCGTCGGCAACGGTGGTTCCGGGGGCGG
CCTGTGGGTCGAGGAGGGTGCAACGGCGACACTGGACGGCTCCTCGCGCC
TACTGAACAATTCGGCGGCGTCTAGCTACACCAACAGGGGCGCAGGCGGG
GGGTTAGCCGTGTCCTCGTCTGCTCGAATTACCTTGTCCGACGGATGTGT
GCTGGAGGGGAACGTGGCCGGTCCAGAGGTGTAGAATTTGGTGGTGGCGG
GGACGTCACGCGGGTTTCCACGAGGCGTTTTGTGTCGTTATTTTTCTGTA
GGGATGAGTTGAGAGGTGGGGGAGAAGATTGAGGTGCGGGGAGCAGGGAG
GTAGCTGTTGTTATATGCTTAGAATAAATTGTCGAGGTAATGTTTTATGT
TGTAAGTAGCAGTGTTTTGGGGGAAGGTTGGTTTGGAGTGATCACCTTTT
GGCGAGGGGGGGAAAATATTAATACTAGCTAAACCCAAGAGGATTTTGTT
TTTGTTCAAGTCAGATGTGTTCCGAACTCGTTAAGTGTATGTCAAAGAGT
TTTCAGAGAATATTGCACTGACGGTTCAACGAAAGGCTCCGCCAAGGTTC
CACGAAGTTTCTACGGAAGGTTCCTCAGAAGTTTCCATTGAATGAGGTTG
TTCCACACGAGGGTTCTTAAGATTTCGCGGAAGATTCTCCGGAAGGTTCC
CAGGGGAGATCATACGCAGGGATCTGAAACAAAACCGACCTCTCGCCTTC
ACCGGATTAGCTTTAGCATCCTCTGGCTGGAGGCATTTGCTTTTGCTCCC
AACGACACTGCAACGGCCTTACCTCCAGGGGACTAATTTTCCTGTAGCTC
GCACACTATTTTACTGCCGGTACACGGTGTGCCCCTCCCCTCATTTCCTT
TCCCCGAACAACTCTTCTCGTTCCAAAACGCCACAGGACGTTGGGGAAAC
CCAGCCGGCGTGCTTATCTGGGGAGGGTGGTGCGATTTTCTCGTCCGGAT
CGGGGATTTCCCTTGTAGGCGTTATTCTGAGATGGAATCGGTGCGAGACA
GGGGCTCTGGACGCGGGGTGTTCCGGTGGCGCCGTGAGCATCATTGGTCG
TGGACCGGACCCCGGAATAACTGCTCCTGCTCCTGCTCCTGCTTCTGATT
CTTCTTTTGCGCCAATGGGTGCGTTGCGGGACAATGCGACGCAGGAAATC
TACCCACGAAGCAAGGCCATTACCGACTCACGCCCACTCACAAACCGCCT
TTCAAACATCACACGGTCTCGTATTTATTTTTTGTTCCGTGCCCTTTGCC
CATTTTATCGTCTTCCCTTGCAAGGCGGCGCAACCAACAAAAGCGGAGCG
ATTTTCGAGGCATGCGTATTCGAGGGCAATGAAGCCAGAGGCTCCGTCAC
CAGCAGTGTTTACAGCGGCGCTGGTCAGGTGCGTCAGACCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig113970:228..1670+

>mRNA_H-elongata_contig113970.1110.1 ID=mRNA_H-elongata_contig113970.1110.1|Name=mRNA_H-elongata_contig113970.1110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig113970:228..1670+ (Himanthalia elongata Himel1 dioecious)
GATTCGACGGTCATTGGCAACGCCGTCGGCAACGGTGGTTCCGGGGGCGG
CCTGTGGGTCGAGGAGGGTGCAACGGCGACACTGGACGGCTCCTCGCGCC
TACTGAACAATTCGGCGGCGTCTAGCTACACCAACAGGGGCGCAGGCGGG
GGGTTAGCCGTGTCCTCGTCTGCTCGAATTACCTTGTCCGACGGATGTGT
GCTGGAGGGGAACGTGGCCGGTCCAGAGGATTCGACGGTCATTGGCAACG
CCGTCGGCAACGGTGGTTCCGGGGGCGGCCTGTGGGTCGAGGAGGGTGCA
ACGGCGACACTGGACGGCTCCTCGCGCCTACTGAACAATTCGGCGGCGTC
TAGCTACACCAACAGGGGCGCAGGCGGGGGGTTAGCCGTGTCCTCGTCTG
CTCGAATTACCTTGTCCGACGGATGTGTGCTGGAGGGGAACGTGGCCGGT
CCAGAGGACGTTGGGGAAACCCAGCCGGCGTGCTTATCTGGGGAGGGTGG
TGCGATTTTCTCGTCCGGATCGGGGATTTCCCTTGTAGGCGTTATTCTGA
GATGGAATCGGTGCGAGACAGGGGCTCTGGACGCGGGGTGTTCCGGTGGC
GCCGTGAGCATCATTGGTCGTGGACCGGACCCCGGAATAACTGCTCCTGC
TCCTGCTCCTGCTTCTGATTCTTCTTTTGCGCCAATGGGTGCGACGTTGG
GGAAACCCAGCCGGCGTGCTTATCTGGGGAGGGTGGTGCGATTTTCTCGT
CCGGATCGGGGATTTCCCTTGTAGGCGTTATTCTGAGATGGAATCGGTGC
GAGACAGGGGCTCTGGACGCGGGGTGTTCCGGTGGCGCCGTGAGCATCAT
TGGTCGTGGACCGGACCCCGGAATAACTGCTCCTGCTCCTGCTCCTGCTT
CTGATTCTTCTTTTGCGCCAATGGGTGCCGGAGCGATTTTCGAGGCATGC
GTATTCGAGGGCAATGAAGCCAGAGGCTCCGTCACCAGCAGTGTTTACAG
CGGCGCTGGTCAGGTGCGTCAGACCTAACGGAGCGATTTTCGAGGCATGC
GTATTCGAGGGCAATGAAGCCAGAGGCTCCGTCACCAGCAGTGTTTACAG
CGGCGCTGGTCAGGTGCGTCAGACCTAA
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