mRNA_H-elongata_contig113944.1108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113944.1108.1
Unique NamemRNA_H-elongata_contig113944.1108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: D8LRL3_ECTSI (Sulfate adenylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL3_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 2.150e-52
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   13 QYMIAATPKEGKLAAVPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            QYM+AA  KE  +AAVPHGG LV+L +KTD EK  A+  CD+E+YL+PRQLCDAELICNGGFSPLTGFMTE EY SVVENNRLPNGLLFGLPVVYDTDREDLKPG
Sbjct:   56 QYMVAAPAKEDTVAAVPHGGTLVDLNLKTDEEKKAAIAACDIEIYLNPRQLCDAELICNGGFSPLTGFMTEEEYTSVVENNRLPNGLLFGLPVVYDTDREDLKPG 160
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A6H5JT69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT69_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.820e-50
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:   13 QYMIAATPKEGKLAAVPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            QYM+AA  KE  +AAVPHGG LV+L +K+D EK  A+  CD+E+YL+PRQLCDAELICNGGFSPLTGFMTE EY+SVVE NRLPNGLLFGLPVVYDTDREDLKPG
Sbjct:   56 QYMVAAPAKEDTVAAVPHGGTLVDLNLKSDEEKKAAIAACDIEIYLNPRQLCDAELICNGGFSPLTGFMTEEEYMSVVEKNRLPNGLLFGLPVVYDTDREDLKPG 160
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: K0T3U1_THAOC (Sulfate adenylyltransferase n=3 Tax=Thalassiosira TaxID=35127 RepID=K0T3U1_THAOC)

HSP 1 Score: 134 bits (338), Expect = 1.790e-35
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:   58 VPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPGE 330
            VPHGG LV+LI+KTD EKA A+  C  EL LSPRQLCD ELI NGGFSPLTGFM E  Y  VV+N  LP+GL+FGLPVV+DTD EDL+PG+
Sbjct:   53 VPHGGSLVDLILKTDEEKAAAVAKCTKELQLSPRQLCDVELIMNGGFSPLTGFMDEETYKHVVDNVALPDGLIFGLPVVFDTDDEDLQPGD 143
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A7R9UDH9_9STRA (Sulfate adenylyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDH9_9STRA)

HSP 1 Score: 130 bits (326), Expect = 9.020e-34
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:   61 PHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            PHGG LV+L+ K D  K  AM GCD+EL L+ RQLCD ELI NGGFSPLTGFM+E+EY SVV N  LPNG+LF LPVV+DTD E ++PG
Sbjct:   47 PHGGTLVDLMAKDDAAKDAAMAGCDMELQLTDRQLCDVELIANGGFSPLTGFMSEDEYTSVVNNMELPNGVLFSLPVVFDTDDETIQPG 135
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A7S2XVD8_9STRA (Sulfate adenylyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XVD8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.100e-32
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:   61 PHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            PHGG L++L++KTD EK  A+  C  EL L+PRQLCD ELI NG FSP+TGFM E  Y SVVEN  LP+GL+FGLPVV+DTD EDL+PG
Sbjct:   58 PHGGTLIDLMLKTDAEKEAAIAKCTSELQLTPRQLCDVELIMNGAFSPITGFMDEATYSSVVENCALPDGLVFGLPVVFDTDSEDLQPG 146
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A7S2A4Q0_TRICV (Sulfate adenylyltransferase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4Q0_TRICV)

HSP 1 Score: 127 bits (318), Expect = 1.640e-32
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   61 PHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPGE 330
            PHGG+LV+L++KTD EK  A+  C  EL L+PRQLCD ELI NGGFSP+ GFM E  Y SVVEN  LP+G++FGLPVV+DT+ EDL PG+
Sbjct:   63 PHGGKLVDLMLKTDEEKEAAIAKCTSELQLTPRQLCDVELIMNGGFSPIEGFMDEETYKSVVENMELPSGVIFGLPVVFDTNSEDLSPGD 152
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A7S3PYN8_9STRA (Sulfate adenylyltransferase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYN8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.860e-32
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   58 VPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            VPHGGELV+L++ +D  K+ A+  C  EL L+PRQLCD ELI NGGFSPLTGFM +  Y SVVE   LP+GL+FGLPV++DTD EDL+PG
Sbjct:   44 VPHGGELVDLMLDSDDAKSAAIAACTAELQLTPRQLCDIELIVNGGFSPLTGFMDQVAYESVVEKMELPDGLIFGLPVIFDTDSEDLQPG 133
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A7S4SWK8_9STRA (Sulfate adenylyltransferase n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S4SWK8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.960e-32
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:   58 VPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            VPHGG LV+L++KTD EK  A+  C  E+ L+PRQLCD ELI NG FSP+TGFM E  Y  VVEN  LP+G +FGLPVVYDTD EDL+PG
Sbjct:   59 VPHGGALVDLMLKTDEEKEAAIAKCTAEVQLTPRQLCDVELIANGAFSPITGFMDEATYKHVVENVALPDGNIFGLPVVYDTDSEDLQPG 148
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A7S1U390_9STRA (Sulfate adenylyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U390_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.010e-31
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:   46 KLAAV-----PHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            KLAA      PHGGEL++L++  D  K  AM G D+EL L+PRQLCD ELI NGGFSPLTGFM E  Y SVV + +LP+GLLF LPVV+DTD E ++PG
Sbjct:   40 KLAATVGLQAPHGGELIDLMVTDDAAKDKAMEGVDMELQLTPRQLCDVELIANGGFSPLTGFMNEETYKSVVADTKLPSGLLFSLPVVFDTDDEKIQPG 138
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BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Match: A0A6U5GRD6_9STRA (Sulfate adenylyltransferase n=5 Tax=Eukaryota TaxID=2759 RepID=A0A6U5GRD6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.400e-31
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   22 IAATPKEGKLAAVPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLCDAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDLKPG 327
            + AT     +   PHGG L++L+ KTD EKA A+    + L  +PRQLCD EL+ NGGFSPLTGFM E  Y SVV+N  LP+GL+FG+PVV+DTD EDL+PG
Sbjct:   53 MTATAAVNTVKQTPHGGTLIDLMAKTDEEKAAAIAKATVTLQATPRQLCDVELLMNGGFSPLTGFMDETTYNSVVDNMELPDGLIFGIPVVFDTDDEDLQPG 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113944.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRL3_ECTSI2.150e-5280.00Sulfate adenylyltransferase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JT69_9PHAE1.820e-5078.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0T3U1_THAOC1.790e-3570.33Sulfate adenylyltransferase n=3 Tax=Thalassiosira ... [more]
A0A7R9UDH9_9STRA9.020e-3467.42Sulfate adenylyltransferase n=1 Tax=Pinguiococcus ... [more]
A0A7S2XVD8_9STRA1.100e-3266.29Sulfate adenylyltransferase n=1 Tax=Attheya septen... [more]
A0A7S2A4Q0_TRICV1.640e-3264.44Sulfate adenylyltransferase n=1 Tax=Trieres chinen... [more]
A0A7S3PYN8_9STRA4.860e-3264.44Sulfate adenylyltransferase n=1 Tax=Chaetoceros de... [more]
A0A7S4SWK8_9STRA5.960e-3265.56Sulfate adenylyltransferase n=2 Tax=Lithodesmiacea... [more]
A0A7S1U390_9STRA1.010e-3161.62Sulfate adenylyltransferase n=1 Tax=Phaeomonas par... [more]
A0A6U5GRD6_9STRA2.400e-3156.86Sulfate adenylyltransferase n=5 Tax=Eukaryota TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113944contigH-elongata_contig113944:532..1724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.5e-41
Seed eggNOG ortholog2880.D8LRL3
Preferred nameMET3
KEGG rclassRC02809,RC02889
KEGG koko:K00958
KEGG ReactionR00529,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
GOsGO:0000096,GO:0000103,GO:0003674,GO:0003824,GO:0004779,GO:0004781,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010134,GO:0016740,GO:0016772,GO:0016779,GO:0019379,GO:0019419,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0070566,GO:0071704,GO:1901564
EggNOG free text desc.sulfate adenylyltransferase (ATP) activity
EggNOG OGsCOG2046@1,KOG0636@2759
EC2.7.7.4
COG Functional cat.P
BiGG ReactioniRC1080.CRv4_Au5_s3_g11218_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP-sulfurylase
Ec32 orthologEc-12_000240.1
Exons2
Model size333
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113944.1108.1prot_H-elongata_contig113944.1108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113944 550..1724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.581097-UTR-H-elongata_contig113944:531..5491622929656.581097-UTR-H-elongata_contig113944:531..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113944 532..549 +
1691679108.1441936-UTR-H-elongata_contig113944:531..5491691679108.1441936-UTR-H-elongata_contig113944:531..549Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113944 532..549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.597714-CDS-H-elongata_contig113944:549..6451622929656.597714-CDS-H-elongata_contig113944:549..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113944 550..645 +
1691679108.1600132-CDS-H-elongata_contig113944:549..6451691679108.1600132-CDS-H-elongata_contig113944:549..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113944 550..645 +
1622929656.610389-CDS-H-elongata_contig113944:1505..17241622929656.610389-CDS-H-elongata_contig113944:1505..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113944 1506..1724 +
1691679108.172571-CDS-H-elongata_contig113944:1505..17241691679108.172571-CDS-H-elongata_contig113944:1505..1724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113944 1506..1724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113944.1108.1

>prot_H-elongata_contig113944.1108.1 ID=prot_H-elongata_contig113944.1108.1|Name=mRNA_H-elongata_contig113944.1108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MIAATPKEGKLAAVPHGGELVNLIIKTDVEKATAMGGCDLELYLSPRQLC
DAELICNGGFSPLTGFMTENEYLSVVENNRLPNGLLFGLPVVYDTDREDL
KPGES
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mRNA from alignment at H-elongata_contig113944:532..1724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113944.1108.1 ID=mRNA_H-elongata_contig113944.1108.1|Name=mRNA_H-elongata_contig113944.1108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1193bp|location=Sequence derived from alignment at H-elongata_contig113944:532..1724+ (Himanthalia elongata Himel1 dioecious)
CCGTACACGACACAGTACATGATAGCTGCTACGCCAAAGGAGGGAAAGCT
TGCAGCAGTACCTCACGGTGGAGAGCTGGTTAACCTGATCATCAAGACGG
ATGTCGAGAAAGCGGTGCGCTGCTGTTGGGTTCACTTGGTCACGCAATGT
AACAGGGAACCATCACACGGCAAAGTCTGACGTCAAAAATATTGTTACAG
ATTTACTACACTATAAAGTGCGACCAACAACCGTTTTTCTTTAAAAACAT
ATGAACTCATTCCAACCCTCCGAACGTCCACACCTTCTTAGCACCGTGAG
AGGTGCAATTCAGGGGACCAATTATCGTCGGGTTCGAATACGTACATTAC
TACCCTTGAGCAGAAAATCGTCACACGTGATAAATCGTGTTCCCTAATAG
TAAGTTCATCGGGCCGATGGTATAATGTCGGGAATCCCATTTGTACTACG
AAATTCGTAAATCTTCAATCTTCGACAACAGTCGAATTCAGTAATCAATT
ATTAAAAGTGTCGAATTCAGCGGTTGAACTTCAAAGTACGTACTAACTCT
ATACAACGCATATGAGTCTGAAGGCACTCTCGCTCTGTTGCGTTGTGCCA
GATATTTCATACAAGTGGGGTGAACAGTCCCGCCCTGTCCCCTTGCAGTA
GAGTTGTATCTTGGTACTCCAGGACTAGGTATCGTATGATTCAATTACGT
ATATATTTATAATCCCCTGAGACTCGCGCTTTACCTGCGGCCTTGTTGTG
GACCACGAGATACGCTAGAATACGCTACTAGATGTAGTAGTACAGTAGTA
AATCGTGGACAGATGGCACCTCATCCTTGGGACACCCATGCTTTTGTTTT
GTGCCTTCCGCCCTTATTGTTATACCATCTGGTTCTTCGATTCTAGGATA
TGCGCCTGTATGTGTGAATCGCTCAATAACACGTCCACTCATTCATGTCG
TCGCCACTGGAATTCCTCGTCCAGACCGCGATGGGCGGGTGCGACCTCGA
GCTATACCTATCTCCTCGCCAGCTGTGCGACGCAGAGCTTATCTGCAACG
GAGGCTTCAGCCCCTTGACAGGCTTCATGACTGAAAACGAGTACCTTTCC
GTTGTTGAAAACAACCGGCTTCCCAACGGACTGCTCTTCGGACTTCCTGT
GGTGTACGACACCGACCGGGAGGATCTCAAGCCCGGTGAGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig113944:532..1724+

>mRNA_H-elongata_contig113944.1108.1 ID=mRNA_H-elongata_contig113944.1108.1|Name=mRNA_H-elongata_contig113944.1108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig113944:532..1724+ (Himanthalia elongata Himel1 dioecious)
ATGATAGCTGCTACGCCAAAGGAGGGAAAGCTTGCAGCAGTACCTCACGG
TGGAGAGCTGGTTAACCTGATCATCAAGACGGATGTCGAGAAAGCGATGA
TAGCTGCTACGCCAAAGGAGGGAAAGCTTGCAGCAGTACCTCACGGTGGA
GAGCTGGTTAACCTGATCATCAAGACGGATGTCGAGAAAGCGACCGCGAT
GGGCGGGTGCGACCTCGAGCTATACCTATCTCCTCGCCAGCTGTGCGACG
CAGAGCTTATCTGCAACGGAGGCTTCAGCCCCTTGACAGGCTTCATGACT
GAAAACGAGTACCTTTCCGTTGTTGAAAACAACCGGCTTCCCAACGGACT
GCTCTTCGGACTTCCTGTGGTGTACGACACCGACCGGGAGGATCTCAAGC
CCGGTGAGAGCACCGCGATGGGCGGGTGCGACCTCGAGCTATACCTATCT
CCTCGCCAGCTGTGCGACGCAGAGCTTATCTGCAACGGAGGCTTCAGCCC
CTTGACAGGCTTCATGACTGAAAACGAGTACCTTTCCGTTGTTGAAAACA
ACCGGCTTCCCAACGGACTGCTCTTCGGACTTCCTGTGGTGTACGACACC
GACCGGGAGGATCTCAAGCCCGGTGAGAGC
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