mRNA_H-elongata_contig113824.1103.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113824.1103.1
Unique NamemRNA_H-elongata_contig113824.1103.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A6H5KMR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.940e-11
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    4 IRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFRNFMAQI 222
            + INSDSTGAL +A+N  ++   K V+ R+  + ELV+ G IT+ H+ +EH LADI TKY+    F + + QI
Sbjct:  586 VPINSDSTGALTVARNAMHSQRTKHVALRYFFIRELVRQGQITLHHRPSEHQLADIATKYIPKHRFASIIQQI 658          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A2X0LH58_9BASI (BZ3500_MvSof-1268-A1-R1_Chr11-2g03469 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0LH58_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 3.090e-7
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFRN 207
            P+++  D+ GA+ALAKN   +  ++ +  R   + + V+ GTI V +  T+ M+ADIFTK LG ++F++
Sbjct:   10 PVQLYGDNQGAIALAKNPTLHHRSRHIHIREHFVRDQVRLGTIQVDYVDTKTMVADIFTKALGPLVFKS 78          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A642V942_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V942_9ASCO)

HSP 1 Score: 50.4 bits (119), Expect = 2.280e-6
Identity = 25/75 (33.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFRNFMAQIE 225
            P++I S++ G+ ++A+N  Y+     +  R   + E VK   I + H  T+ MLADIFTK +G V+F     ++ 
Sbjct:    8 PMKIYSNNNGSKSIAENPVYHHRTNHIDIRHYFIREKVKKQIIEIVHIDTQEMLADIFTKNIGRVVFEKLRDKMS 82          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A2X0L339_9BASI (BZ3500_MvSof-1268-A1-R1_C104g00574 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0L339_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 3.740e-6
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFR 204
            P+++  D+ GA+ALAKN   +  ++ +  R   + + V+ GTI V +  T+ M+ADIFTK LG ++F+
Sbjct:  414 PVQLYGDNQGAIALAKNPTLHHRSRHIRIREHFVRDQVRLGTIQVDYVDTKTMVADIFTKALGPLVFK 481          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A2X0LAK5_9BASI (BZ3500_MvSof-1268-A1-R1_Chr8-2g10054 protein n=2 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0LAK5_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 3.760e-6
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFR 204
            P+++  D+ GA+ALAKN   +  ++ +  R   + + V+ GTI V +  T+ M+ADIFTK LG ++F+
Sbjct:  459 PVQLYGDNQGAIALAKNPTLHHRSRHIRIREHFVRDQVRLGTIQVDYVDTKTMVADIFTKALGPLVFK 526          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A2X0KBQ5_9BASI (BZ3500_MvSof-1268-A1-R1_Chr10-2g02809 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0KBQ5_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 3.810e-6
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFR 204
            P+++  D+ GA+ALAKN   +  ++ +  R   + + V+ GTI V +  T+ M+ADIFTK LG ++F+
Sbjct:  638 PVQLYGDNQGAIALAKNPTLHHRSRHIRIREHFVRDQVRLGTIQVDYVDTKTMVADIFTKALGPLVFK 705          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A2X0L097_9BASI (BZ3500_MvSof-1268-A1-R1_Chr3-2g06215 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0L097_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 3.870e-6
Identity = 26/68 (38.24%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFR 204
            P+++  D+ GA+ALAKN   +  ++ +  R   + + V+ GTI V +  T+ M+ADIFTK LG ++F+
Sbjct: 1007 PVQLYGDNQGAIALAKNPTLHHRSRHIRIREHFVRDQVRLGTIQVDYVDTKTMVADIFTKALGPLVFK 1074          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: UPI001039F20B (uncharacterized protein LOC114402162 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI001039F20B)

HSP 1 Score: 51.6 bits (122), Expect = 9.370e-6
Identity = 23/68 (33.82%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   19 DSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFRNFMAQI 222
            DS  A+ LA N  ++  +K +   +  + ELV+S T+ + H +++H +ADIFTK L ++ F +F+ ++
Sbjct:  309 DSKSAIYLASNPAHHERSKHIDIDYHFIRELVQSNTLKLVHVKSQHQVADIFTKPLMLLAFSSFIRKL 376          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A2X0MLY2_9BASI (BZ3500_MvSof-1268-A1-R1_Chr6-2g08569 protein n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0MLY2_9BASI)

HSP 1 Score: 51.6 bits (122), Expect = 1.000e-5
Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFR 204
            P+++  D+ GA+ALAKN   +  +  +  R   + + V+ GTI V +  T+ M+ADIFTK LG ++F+
Sbjct: 1792 PVQLYGDNQGAIALAKNPTLHHRSHHIRIREHFVRDQVRLGTIQVDYVDTKTMVADIFTKALGPLVFK 1859          
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Match: A0A225VVV9_9STRA (Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VVV9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.260e-5
Identity = 22/73 (30.14%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    4 IRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRTEHMLADIFTKYLGIVLFRNFMAQI 222
            I +  D+ G   LA+++     ++ +  ++  L + VK G + +S+ RT  M+AD FTK LG++ F++F  ++
Sbjct:  250 ITVFEDNQGGQHLAESKAVTQRSRHIDTKYHWLRQKVKEGDVHISYYRTSEMIADHFTKGLGVIKFKHFRDEL 322          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113824.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KMR4_9PHAE1.940e-1145.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2X0LH58_9BASI3.090e-737.68BZ3500_MvSof-1268-A1-R1_Chr11-2g03469 protein n=1 ... [more]
A0A642V942_9ASCO2.280e-633.33Uncharacterized protein n=1 Tax=Trichomonascus cif... [more]
A0A2X0L339_9BASI3.740e-638.24BZ3500_MvSof-1268-A1-R1_C104g00574 protein n=1 Tax... [more]
A0A2X0LAK5_9BASI3.760e-638.24BZ3500_MvSof-1268-A1-R1_Chr8-2g10054 protein n=2 T... [more]
A0A2X0KBQ5_9BASI3.810e-638.24BZ3500_MvSof-1268-A1-R1_Chr10-2g02809 protein n=1 ... [more]
A0A2X0L097_9BASI3.870e-638.24BZ3500_MvSof-1268-A1-R1_Chr3-2g06215 protein n=1 T... [more]
UPI001039F20B9.370e-633.82uncharacterized protein LOC114402162 n=1 Tax=Glyci... [more]
A0A2X0MLY2_9BASI1.000e-538.24BZ3500_MvSof-1268-A1-R1_Chr6-2g08569 protein n=1 T... [more]
A0A225VVV9_9STRA1.260e-530.14Gag-pol Polyprotein n=1 Tax=Phytophthora megakarya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113824contigH-elongata_contig113824:515..751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.167551-CDS-H-elongata_contig113824:514..7511622929656.167551-CDS-H-elongata_contig113824:514..751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113824 515..751 -
1691679108.0039818-CDS-H-elongata_contig113824:514..7511691679108.0039818-CDS-H-elongata_contig113824:514..751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113824 515..751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113824.1103.1prot_H-elongata_contig113824.1103.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113824 515..751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113824.1103.1

>prot_H-elongata_contig113824.1103.1 ID=prot_H-elongata_contig113824.1103.1|Name=mRNA_H-elongata_contig113824.1103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
PIRINSDSTGALALAKNRRYNPHAKDVSRRFKLLEELVKSGTITVSHKRT
EHMLADIFTKYLGIVLFRNFMAQIEQYR*
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mRNA from alignment at H-elongata_contig113824:515..751-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113824.1103.1 ID=mRNA_H-elongata_contig113824.1103.1|Name=mRNA_H-elongata_contig113824.1103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig113824:515..751- (Himanthalia elongata Himel1 dioecious)
CCTATCCGCATCAACTCAGACAGCACGGGTGCGTTGGCATTGGCGAAAAA TCGCAGATATAATCCACACGCAAAAGATGTTTCCCGACGCTTCAAACTAC TGGAGGAGCTAGTGAAAAGTGGCACCATTACTGTCTCTCACAAGAGGACC GAGCACATGCTTGCTGATATATTTACCAAGTACCTGGGGATCGTGTTATT TAGAAACTTTATGGCGCAAATCGAGCAATACCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig113824:515..751-

>mRNA_H-elongata_contig113824.1103.1 ID=mRNA_H-elongata_contig113824.1103.1|Name=mRNA_H-elongata_contig113824.1103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig113824:515..751- (Himanthalia elongata Himel1 dioecious)
CCTATCCGCATCAACTCAGACAGCACGGGTGCGTTGGCATTGGCGAAAAA
TCGCAGATATAATCCACACGCAAAAGATGTTTCCCGACGCTTCAAACTAC
TGGAGGAGCTAGTGAAAAGTGGCACCATTACTGTCTCTCACAAGAGGACC
GAGCACATGCTTGCTGATATATTTACCAAGTACCTGGGGATCGTGTTATT
TAGAAACTTTATGGCGCAAATCGAGCAATACCGGTGACCTATCCGCATCA
ACTCAGACAGCACGGGTGCGTTGGCATTGGCGAAAAATCGCAGATATAAT
CCACACGCAAAAGATGTTTCCCGACGCTTCAAACTACTGGAGGAGCTAGT
GAAAAGTGGCACCATTACTGTCTCTCACAAGAGGACCGAGCACATGCTTG
CTGATATATTTACCAAGTACCTGGGGATCGTGTTATTTAGAAACTTTATG
GCGCAAATCGAGCAATACCGGTGA
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