mRNA_H-elongata_contig113802.1102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113802.1102.1
Unique NamemRNA_H-elongata_contig113802.1102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: D7FKC9_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.030e-14
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   73 TNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFK 222
            TNHYAV+G+ DF+ GS+ +R+YHRLAL WHPDRQV+A+E  + +AED FK
Sbjct:    3 TNHYAVMGIQDFARGSEAKRAYHRLALVWHPDRQVNASEQRKTEAEDVFK 52          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A812TDS1_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812TDS1_SYMMI)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 QQLGSSIYIMVRAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            QQ+   +   +R  REA      S N YA+LGL      SDV++ +H+LALQ HPD+    +E  +K AE +FK  +  + V
Sbjct:  777 QQISQDLAAWLRRAREAVHRKD-SRNFYAILGLRCDCDSSDVKKRFHKLALQCHPDKVHSTSEVLKKSAEARFKAIQEAYEV 857          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A1Q9CC58_SYMMI (DnaJ-like subfamily C member 7-like n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CC58_SYMMI)

HSP 1 Score: 56.2 bits (134), Expect = 2.610e-7
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 QQLGSSIYIMVRAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            QQ+   +   +R  REA      S N YA+LGL      SDV++ +H+LALQ HPD+    +E  +K AE +FK  +  + V
Sbjct:  971 QQISQDLAAWLRRAREAVHRKD-SRNFYAILGLRCDCDSSDVKKRFHKLALQCHPDKVHSTSEVLKKSAEARFKAIQEAYEV 1051          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A2G6PJ11_9BACT (J domain-containing protein n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=A0A2G6PJ11_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.600e-7
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   70 STNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFK 222
            S ++Y VLGL   +   +VRR+Y +LA+QWHPDR   + ED +++A +KFK
Sbjct:  197 SVDYYGVLGLSSDASDDEVRRTYRKLAMQWHPDRFSTSPEDKQREASEKFK 247          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A812NFV3_9DINO (Dnajc7 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812NFV3_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 4.770e-7
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 QQLGSSIYIMVRAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            QQL   +   +R  REA      S N YA+LGL      S+V++ +H+LALQ HPD+    +E  +K AE +FK  +  + V
Sbjct:  546 QQLSQDLAAWLRRAREAVHRKD-SRNFYAILGLRCDCDSSEVKKRFHKLALQCHPDKVHSTSEVLKKSAEARFKAIQEAYEV 626          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A8C4UKX2_FALTI (J domain-containing protein n=4 Tax=Falco TaxID=8952 RepID=A0A8C4UKX2_FALTI)

HSP 1 Score: 50.1 bits (118), Expect = 2.070e-6
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   76 NHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            ++Y VLGL   +   DV++SYH+LAL+WHPD+        R++AE KFK     ++V
Sbjct:    3 DYYKVLGLQKSASQDDVKKSYHKLALKWHPDKNP----SNREEAEKKFKAVGEAYKV 55          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A812RW61_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812RW61_SYMPI)

HSP 1 Score: 53.5 bits (127), Expect = 2.070e-6
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 QQLGSSIYIMVRAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            QQ    + + +R  REA      S + YA+LGL      +DVR+S+H+LALQ HPD+    +E  +K AE +FK  +  + V
Sbjct:  219 QQSLQDLAMWLRRAREAVRRND-SRSFYAILGLRCDCDAADVRKSFHKLALQCHPDKVHSTSEVLKKSAEARFKAIQEAYEV 299          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A2I0LVP9_COLLI (DnaJ (Hsp40) homolog, subfamily B, member 8 n=4 Tax=Columbidae TaxID=8930 RepID=A0A2I0LVP9_COLLI)

HSP 1 Score: 52.8 bits (125), Expect = 2.680e-6
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   76 NHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKV 225
            NHY VLGL   +   D+++SYH+LAL+WHPD+  +  E+    AE KFK 
Sbjct:    2 NHYKVLGLQKNASQDDIKKSYHKLALKWHPDKNPNNKEE----AEKKFKA 47          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A1Q9E9A6_SYMMI (DnaJ-like subfamily C member 7 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E9A6_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 3.150e-6
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   34 RAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            RA R A   P    N+YAVLG+   +  +D++++Y RLAL+WHPD+ V  TE+    A  KFK  +  F V
Sbjct:  738 RALRWAARPP--QKNYYAVLGVSFNATQADIKKAYRRLALKWHPDKNVDRTEE----ASQKFKALQEAFEV 802          
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Match: A0A813CH25_9DINO (DNAJC7 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CH25_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 3.200e-6
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   34 RAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQVHATEDCRKDAEDKFKVRRGVFRV 246
            RA R A   P    N+YAVLG+   +  +D++++Y RLAL+WHPD+ V  TE+    A  KFK  +  F V
Sbjct:  668 RALRWAARPP--QKNYYAVLGVSFNATQADIKKAYRRLALKWHPDKNVDRTEE----ASQKFKALQEAFEV 732          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113802.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKC9_ECTSI1.030e-1464.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A812TDS1_SYMMI2.590e-737.80Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A1Q9CC58_SYMMI2.610e-737.80DnaJ-like subfamily C member 7-like n=1 Tax=Symbio... [more]
A0A2G6PJ11_9BACT3.600e-747.06J domain-containing protein n=1 Tax=Bacteroidia ba... [more]
A0A812NFV3_9DINO4.770e-737.80Dnajc7 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A8C4UKX2_FALTI2.070e-642.11J domain-containing protein n=4 Tax=Falco TaxID=89... [more]
A0A812RW61_SYMPI2.070e-637.80Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A2I0LVP9_COLLI2.680e-648.00DnaJ (Hsp40) homolog, subfamily B, member 8 n=4 Ta... [more]
A0A1Q9E9A6_SYMMI3.150e-642.25DnaJ-like subfamily C member 7 n=2 Tax=Symbiodiniu... [more]
A0A813CH25_9DINO3.200e-642.25DNAJC7 protein n=2 Tax=Symbiodinium TaxID=2949 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113802contigH-elongata_contig113802:838..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue5.2e-12
Seed eggNOG ortholog2880.D7FKC9
Preferred nameJJJ2
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-05_005730.1
Exons1
Model size246
Cds size219
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.0943089-UTR-H-elongata_contig113802:837..8641622929656.0943089-UTR-H-elongata_contig113802:837..864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113802 838..864 +
1691679107.9860313-UTR-H-elongata_contig113802:837..8641691679107.9860313-UTR-H-elongata_contig113802:837..864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113802 838..864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.1083333-CDS-H-elongata_contig113802:864..10831622929656.1083333-CDS-H-elongata_contig113802:864..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113802 865..1083 +
1691679107.995648-CDS-H-elongata_contig113802:864..10831691679107.995648-CDS-H-elongata_contig113802:864..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113802 865..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113802.1102.1prot_H-elongata_contig113802.1102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113802 865..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113802.1102.1

>prot_H-elongata_contig113802.1102.1 ID=prot_H-elongata_contig113802.1102.1|Name=mRNA_H-elongata_contig113802.1102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MVRAKREATPGPPWSTNHYAVLGLHDFSPGSDVRRSYHRLALQWHPDRQV
HATEDCRKDAEDKFKVRRGVFRV
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mRNA from alignment at H-elongata_contig113802:838..1083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113802.1102.1 ID=mRNA_H-elongata_contig113802.1102.1|Name=mRNA_H-elongata_contig113802.1102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig113802:838..1083+ (Himanthalia elongata Himel1 dioecious)
CAACAGCTCGGAAGCTCTATATATATCATGGTACGTGCAAAGAGAGAAGC GACGCCAGGGCCACCATGGAGCACGAATCATTACGCGGTCCTTGGCCTCC ACGACTTCTCTCCCGGTTCGGACGTAAGGAGATCCTACCATCGCTTGGCT CTCCAGTGGCACCCGGACCGCCAGGTTCACGCAACGGAAGACTGTCGGAA GGACGCTGAAGACAAATTCAAGGTCCGCCGGGGCGTGTTTCGTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig113802:838..1083+

>mRNA_H-elongata_contig113802.1102.1 ID=mRNA_H-elongata_contig113802.1102.1|Name=mRNA_H-elongata_contig113802.1102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig113802:838..1083+ (Himanthalia elongata Himel1 dioecious)
ATGGTACGTGCAAAGAGAGAAGCGACGCCAGGGCCACCATGGAGCACGAA
TCATTACGCGGTCCTTGGCCTCCACGACTTCTCTCCCGGTTCGGACGTAA
GGAGATCCTACCATCGCTTGGCTCTCCAGTGGCACCCGGACCGCCAGGTT
CACGCAACGGAAGACTGTCGGAAGGACGCTGAAGACAAATTCAAGGTCCG
CCGGGGCGTGTTTCGTGTTATGGTACGTGCAAAGAGAGAAGCGACGCCAG
GGCCACCATGGAGCACGAATCATTACGCGGTCCTTGGCCTCCACGACTTC
TCTCCCGGTTCGGACGTAAGGAGATCCTACCATCGCTTGGCTCTCCAGTG
GCACCCGGACCGCCAGGTTCACGCAACGGAAGACTGTCGGAAGGACGCTG
AAGACAAATTCAAGGTCCGCCGGGGCGTGTTTCGTGTT
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