mRNA_H-elongata_contig113714.1095.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113714.1095.1
Unique NamemRNA_H-elongata_contig113714.1095.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113714.1095.1 vs. uniprot
Match: D8LRE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRE0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.160e-34
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 RGSKDARSFRPSTLAEINMMNKYEPLTMKCGSRTIPIACGNSLEDFLLMCGCVFALWSFILGFSSLLLKSALDTDL 228
            RGSKDARSFRPSTLAEINMMN+YEPL +KCG +T  I CGNSLED LL+ GC+ ALWSF+LG S LLLKSA+DTDL
Sbjct:   44 RGSKDARSFRPSTLAEINMMNRYEPLELKCGGKTFGIGCGNSLEDVLLIMGCILALWSFVLGVSGLLLKSAIDTDL 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113714.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRE0_ECTSI1.160e-3477.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113714contigH-elongata_contig113714:1381..1611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002890.1
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.6236598-CDS-H-elongata_contig113714:1380..16111622929655.6236598-CDS-H-elongata_contig113714:1380..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113714 1381..1611 +
1691679107.8145232-CDS-H-elongata_contig113714:1380..16111691679107.8145232-CDS-H-elongata_contig113714:1380..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113714 1381..1611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113714.1095.1prot_H-elongata_contig113714.1095.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113714 1381..1611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113714.1095.1

>prot_H-elongata_contig113714.1095.1 ID=prot_H-elongata_contig113714.1095.1|Name=mRNA_H-elongata_contig113714.1095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RGSKDARSFRPSTLAEINMMNKYEPLTMKCGSRTIPIACGNSLEDFLLMC
GCVFALWSFILGFSSLLLKSALDTDL*
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mRNA from alignment at H-elongata_contig113714:1381..1611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113714.1095.1 ID=mRNA_H-elongata_contig113714.1095.1|Name=mRNA_H-elongata_contig113714.1095.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig113714:1381..1611+ (Himanthalia elongata Himel1 dioecious)
CGAGGGTCCAAGGATGCACGCTCCTTCAGGCCCTCGACGCTGGCGGAGAT
CAACATGATGAACAAGTACGAGCCCCTCACGATGAAGTGTGGCAGCCGCA
CCATCCCCATCGCGTGCGGCAACTCCCTCGAGGACTTCCTGCTTATGTGC
GGTTGCGTCTTTGCGCTCTGGTCGTTCATCCTTGGTTTCTCATCGCTCTT
GCTGAAGTCCGCCCTCGACACAGACCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig113714:1381..1611+

>mRNA_H-elongata_contig113714.1095.1 ID=mRNA_H-elongata_contig113714.1095.1|Name=mRNA_H-elongata_contig113714.1095.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig113714:1381..1611+ (Himanthalia elongata Himel1 dioecious)
CGAGGGTCCAAGGATGCACGCTCCTTCAGGCCCTCGACGCTGGCGGAGAT
CAACATGATGAACAAGTACGAGCCCCTCACGATGAAGTGTGGCAGCCGCA
CCATCCCCATCGCGTGCGGCAACTCCCTCGAGGACTTCCTGCTTATGTGC
GGTTGCGTCTTTGCGCTCTGGTCGTTCATCCTTGGTTTCTCATCGCTCTT
GCTGAAGTCCGCCCTCGACACAGACCTGTGACGAGGGTCCAAGGATGCAC
GCTCCTTCAGGCCCTCGACGCTGGCGGAGATCAACATGATGAACAAGTAC
GAGCCCCTCACGATGAAGTGTGGCAGCCGCACCATCCCCATCGCGTGCGG
CAACTCCCTCGAGGACTTCCTGCTTATGTGCGGTTGCGTCTTTGCGCTCT
GGTCGTTCATCCTTGGTTTCTCATCGCTCTTGCTGAAGTCCGCCCTCGAC
ACAGACCTGTGA
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