mRNA_H-elongata_contig11371.1094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11371.1094.1
Unique NamemRNA_H-elongata_contig11371.1094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11371.1094.1 vs. uniprot
Match: D7FVX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX0_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.160e-40
Identity = 85/137 (62.04%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    1 DWGQMDIGYRDR-ELTASDGVRRSEEATAAAMS-WEMAEQPAGGQGIEGVWEEKEMGGVERERWGEGEVGEYYG-ADEAVEMSALVVTLRQYPDAWGAFVDLHDGMGFRFCGTWDLKPPRTAVKTVVMDHILRIVMD 402
            DWG +DIGYRD  E    +  R S+EA AA    W       G    EG   EKE+      RWGEGEVGE+ G ADEA EM+AL VTLRQYPDAW AFVDLHDG+GFR CGTWD +PPR+AVKTVVMDHILRI+MD
Sbjct:  575 DWGDLDIGYRDSTEWEEMEDERLSDEAAAAXXXXWSEXXXXXG----EGSLREKEL------RWGEGEVGEWDGEADEAAEMAALAVTLRQYPDAWEAFVDLHDGVGFRLCGTWDREPPRSAVKTVVMDHILRIIMD 701
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BLAST of mRNA_H-elongata_contig11371.1094.1 vs. uniprot
Match: A0A6H5JJW2_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW2_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.970e-35
Identity = 78/140 (55.71%), Postives = 90/140 (64.29%), Query Frame = 1 
Query:    1 DWGQMDIGYRDR-ELTASDGVRRSEEATAAAMSWEMAEQPAGGQGIEGVWEEKEMG----GVERERWGEGEVGEYYG-ADEAVEMSALVVTLRQYPDAWGAFVDLHDGMGFRFCGTWDLKPPRTAVKTVVMDHILRIVMD 402
            DWG +DIGYRDR E    +  R S+EA AAA++                W E+E G              EVGE+ G ADEA EM+AL VTLRQYPDAW AFVDLHDG+GFR CGTWD +PP +AVKTVVMDHILRI+MD
Sbjct:  531 DWGDLDIGYRDRSEWDEMEDERLSDEAAAAALA---------------AWSEEEEGEXXXXXXXXXXXXXEVGEWDGEADEAAEMAALAVTLRQYPDAWEAFVDLHDGVGFRLCGTWDREPPPSAVKTVVMDHILRIIMD 655
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11371.1094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVX0_ECTSI5.160e-4062.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJW2_9PHAE2.970e-3555.71DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11371contigH-elongata_contig11371:2550..3153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue3.3e-33
Seed eggNOG ortholog2880.D7FVX0
EggNOG OGs2CBGF@1,2SCME@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002445.1
Exons2
Model size405
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11371.1094.1prot_H-elongata_contig11371.1094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11371 2550..3141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.5634117-CDS-H-elongata_contig11371:2549..26821622929655.5634117-CDS-H-elongata_contig11371:2549..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11371 2550..2682 -
1691679107.7801566-CDS-H-elongata_contig11371:2549..26821691679107.7801566-CDS-H-elongata_contig11371:2549..2682Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11371 2550..2682 -
1622929655.5764105-CDS-H-elongata_contig11371:2881..31411622929655.5764105-CDS-H-elongata_contig11371:2881..3141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11371 2882..3141 -
1691679107.7958138-CDS-H-elongata_contig11371:2881..31411691679107.7958138-CDS-H-elongata_contig11371:2881..3141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11371 2882..3141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.587195-UTR-H-elongata_contig11371:3141..31531622929655.587195-UTR-H-elongata_contig11371:3141..3153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11371 3142..3153 -
1691679107.8060622-UTR-H-elongata_contig11371:3141..31531691679107.8060622-UTR-H-elongata_contig11371:3141..3153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11371 3142..3153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11371.1094.1

>prot_H-elongata_contig11371.1094.1 ID=prot_H-elongata_contig11371.1094.1|Name=mRNA_H-elongata_contig11371.1094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MDIGYRDRELTASDGVRRSEEATAAAMSWEMAEQPAGGQGIEGVWEEKEM
GGVERERWGEGEVGEYYGADEAVEMSALVVTLRQYPDAWGAFVDLHDGMG
FRFCGTWDLKPPRTAVKTVVMDHILRIVMD*
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mRNA from alignment at H-elongata_contig11371:2550..3153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11371.1094.1 ID=mRNA_H-elongata_contig11371.1094.1|Name=mRNA_H-elongata_contig11371.1094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at H-elongata_contig11371:2550..3153- (Himanthalia elongata Himel1 dioecious)
GACTGGGGGCAAATGGACATTGGATACCGAGATAGAGAATTAACTGCCAG
CGACGGCGTGCGCCGGTCGGAAGAGGCGACCGCGGCAGCGATGTCGTGGG
AGATGGCGGAACAGCCCGCGGGAGGGCAAGGGATTGAAGGCGTGTGGGAG
GAGAAGGAAATGGGGGGCGTGGAGAGGGAGAGATGGGGGGAGGGGGAAGT
GGGGGAGTATTACGGCGCGGACGAGGCGGTGGAGATGTCGGCCCTGGTGG
TGACTCTCCGGCAATATCCCGAGTAAGAGGAGAACGACAATAGTTCATCT
TGTGTAGTATGCCTCGATTCTAACCCAACTCTAAGGAGCCGTGCCGACTT
ATGATCCTCGAAAGATCTCGGAGGAAATTGTTCCCATGAACCTCTCTCAC
TGCTCCCATCCCTCGCCCCCCCCCCGCGCGCGCTCATATGTTTTTCCTCA
TGTTTCCTGTGCTGCTGCCAGTGCGTGGGGGGCGTTCGTCGATCTACACG
ACGGAATGGGATTCCGTTTCTGTGGCACGTGGGATTTGAAACCTCCCCGT
ACAGCTGTCAAGACAGTCGTCATGGATCACATCCTGCGAATCGTGATGGA
CTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11371:2550..3153-

>mRNA_H-elongata_contig11371.1094.1 ID=mRNA_H-elongata_contig11371.1094.1|Name=mRNA_H-elongata_contig11371.1094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig11371:2550..3153- (Himanthalia elongata Himel1 dioecious)
ATGGACATTGGATACCGAGATAGAGAATTAACTGCCAGCGACGGCGTGCG
CCGGTCGGAAGAGGCGACCGCGGCAGCGATGTCGTGGGAGATGGCGGAAC
AGCCCGCGGGAGGGCAAGGGATTGAAGGCGTGTGGGAGGAGAAGGAAATG
GGGGGCGTGGAGAGGGAGAGATGGGGGGAGGGGGAAGTGGGGGAGTATTA
CGGCGCGGACGAGGCGGTGGAGATGTCGGCCCTGGTGGTGACTCTCCGGC
AATATCCCGAATGGACATTGGATACCGAGATAGAGAATTAACTGCCAGCG
ACGGCGTGCGCCGGTCGGAAGAGGCGACCGCGGCAGCGATGTCGTGGGAG
ATGGCGGAACAGCCCGCGGGAGGGCAAGGGATTGAAGGCGTGTGGGAGGA
GAAGGAAATGGGGGGCGTGGAGAGGGAGAGATGGGGGGAGGGGGAAGTGG
GGGAGTATTACGGCGCGGACGAGGCGGTGGAGATGTCGGCCCTGGTGGTG
ACTCTCCGGCAATATCCCGATGCGTGGGGGGCGTTCGTCGATCTACACGA
CGGAATGGGATTCCGTTTCTGTGGCACGTGGGATTTGAAACCTCCCCGTA
CAGCTGTCAAGACAGTCGTCATGGATCACATCCTGCGAATCGTGATGGAC
TGATGCGTGGGGGGCGTTCGTCGATCTACACGACGGAATGGGATTCCGTT
TCTGTGGCACGTGGGATTTGAAACCTCCCCGTACAGCTGTCAAGACAGTC
GTCATGGATCACATCCTGCGAATCGTGATGGACTGA
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