mRNA_H-elongata_contig113696.1093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig113696.1093.1
Unique Name	mRNA_H-elongata_contig113696.1093.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: D7FMN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN9_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.210e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQAE 198
            RARAVWIYTLLACLEKPLGSETAALVREILRRCC+QRAEVE+PLDDNLPALN+I AITGRFFQQAE
Sbjct:  243 RARAVWIYTLLACLEKPLGSETAALVREILRRCCSQRAEVESPLDDNLPALNIITAITGRFFQQAE 308

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: A0A6H5K160_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K160_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.220e-34
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQAE 198
            RARAVWIYTLLACLEKPLGSETAALVREILRRCC+QRAEVE+PLDDNLPALN+I AITGRFFQQAE
Sbjct:  331 RARAVWIYTLLACLEKPLGSETAALVREILRRCCSQRAEVESPLDDNLPALNIIAAITGRFFQQAE 396

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: M4C4K0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K0_HYAAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVW+Y L+A L+KP+ +  AA +R+ILRRC   R E+ETP +  L +LNV++ ITG FF Q
Sbjct:  190 RARAVWMYALMARLDKPVHAAVAATIRQILRRCWTLRCELETPSEVQLKSLNVLIVITGDFFGQ 253

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: A0A662WVK0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVK0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-14
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R++LRRC   R E+E P +  L ALNV+V I G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHAGVAATIRQLLRRCWTLRCELEAPSEQQLKALNVLVVIAGDFFGQ 254

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: H3GMA3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMA3_PHYRM)

HSP 1 Score: 73.2 bits (178), Expect = 6.020e-14
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R E+E P +  L +LN+++ I+G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRCELEAPTEIQLKSLNILIVISGDFFGQ 254

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: A0A225WKV8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WKV8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.100e-14
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R++LRRC A R E+ET     L ALN+++ +TG FF Q
Sbjct:  192 RARAVWIYALLARLDKPVHASVAATIRQLLRRCWALRCELETLSQIQLKALNILIVVTGDFFGQ 255

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: G4YNM5_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YNM5_PHYSP)

HSP 1 Score: 72.8 bits (177), Expect = 8.510e-14
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R+E+E P +  L +LN+++ I G FF Q
Sbjct:  192 RARAVWIYALLARLDKPVHANVAATIRQILRRCWTLRSELEAPSEVQLKSLNILIVIAGDFFGQ 255

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: W2QYQ9_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2QYQ9_PHYPN)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R+E+E P +  L +LN+++ I G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRSELEAPPEIQLKSLNILIVIAGDFFGQ 254

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: D0MWF2_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MWF2_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 1.640e-13
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1

Query:    1 RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            RARAVWIY LLA L+KP+ +  AA +R+ILRRC   R E+E P +  L +LN+++ I G FF Q
Sbjct:  191 RARAVWIYALLARLDKPVHASVAATIRQILRRCWTLRCELEKPSEMQLKSLNILIVIAGDFFGQ 254

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BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Match: E3TF03_ICTPU (Gem-associated protein 2 n=6 Tax=Siluroidei TaxID=1489793 RepID=E3TF03_ICTPU)

HSP 1 Score: 71.6 bits (174), Expect = 2.210e-13
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1

Query:   16 WIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPALNVIVAITGRFFQQ 192
            W+Y LLACLEKPL  E  +L+R++ RRC A RA +E   D+ LPALN+++ I  R+F+Q
Sbjct:  191 WLYALLACLEKPLLPEAHSLIRQLARRCSAVRAHLENKDDERLPALNLMICIVARYFEQ 249

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot

BLAST of mRNA_H-elongata_contig113696.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FMN9_ECTSI	6.210e-35	93.94	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K160_9PHAE	3.220e-34	93.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
M4C4K0_HYAAE	2.180e-14	54.69	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A662WVK0_9STRA	3.090e-14	56.25	Uncharacterized protein n=1 Tax=Nothophytophthora ...	[more]
H3GMA3_PHYRM	6.020e-14	53.13	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A225WKV8_9STRA	6.100e-14	54.69	Uncharacterized protein n=1 Tax=Phytophthora megak...	[more]
G4YNM5_PHYSP	8.510e-14	53.13	Uncharacterized protein n=5 Tax=Phytophthora TaxID...	[more]
W2QYQ9_PHYPN	1.170e-13	53.13	Uncharacterized protein n=14 Tax=Phytophthora TaxI...	[more]
D0MWF2_PHYIT	1.640e-13	53.13	Uncharacterized protein n=2 Tax=Phytophthora infes...	[more]
E3TF03_ICTPU	2.210e-13	52.54	Gem-associated protein 2 n=6 Tax=Siluroidei TaxID=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig113696	contig	H-elongata_contig113696:328..1142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	76.3
Seed ortholog evalue	6.5e-12
Seed eggNOG ortholog	272952.HpaP814018
Preferred name	GEMIN2
KEGG ko	ko:K13130
KEGG Pathway	ko03013,map03013
KEGG Module	M00426
GOs	GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0007275,GO:0007610,GO:0007626,GO:0007629,GO:0008150,GO:0008152,GO:0008344,GO:0008380,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0022607,GO:0022613,GO:0022618,GO:0030534,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032797,GO:0032991,GO:0034622,GO:0034641,GO:0034718,GO:0034719,GO:0034730,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046907,GO:0048856,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071254,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097504,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.	Survival motor neuron (SMN) interacting protein 1 (SIP1)
EggNOG OGs	28H7D@1,2QPK4@2759,3Q7JH@4776
Ec32 ortholog description	Gem-associated protein 2
Ec32 ortholog	Ec-23_001020.1
COG Functional cat.	S
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03041
Hectar predicted targeting category	signal peptide
Exons	3
Model size	210
Cds size	210
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig113696.1093.1	prot_H-elongata_contig113696.1093.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig113696 328..1142 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929655.4857256-CDS-H-elongata_contig113696:327..388	1622929655.4857256-CDS-H-elongata_contig113696:327..388	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig113696 328..388 +
1691679107.7354012-CDS-H-elongata_contig113696:327..388	1691679107.7354012-CDS-H-elongata_contig113696:327..388	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig113696 328..388 +
1622929655.5007756-CDS-H-elongata_contig113696:736..795	1622929655.5007756-CDS-H-elongata_contig113696:736..795	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig113696 737..795 +
1691679107.7543073-CDS-H-elongata_contig113696:736..795	1691679107.7543073-CDS-H-elongata_contig113696:736..795	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig113696 737..795 +
1622929655.521627-CDS-H-elongata_contig113696:1052..1142	1622929655.521627-CDS-H-elongata_contig113696:1052..1142	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig113696 1053..1142 +
1691679107.7674093-CDS-H-elongata_contig113696:1052..1142	1691679107.7674093-CDS-H-elongata_contig113696:1052..1142	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig113696 1053..1142 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig113696:328..1142+
coding sequence from alignment at H-elongata_contig113696:328..1142+

protein sequence of mRNA_H-elongata_contig113696.1093.1

>prot_H-elongata_contig113696.1093.1 ID=prot_H-elongata_contig113696.1093.1|Name=mRNA_H-elongata_contig113696.1093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
RARAVWIYTLLACLEKPLGSETAALVREILRRCCAQRAEVETPLDDNLPA
LNVIVAITGRFFQQAEAVY*

mRNA from alignment at H-elongata_contig113696:328..1142+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig113696.1093.1 ID=mRNA_H-elongata_contig113696.1093.1|Name=mRNA_H-elongata_contig113696.1093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=815bp|location=Sequence derived from alignment at H-elongata_contig113696:328..1142+ (Himanthalia elongata Himel1 dioecious)
AGGGCTCGTGCGGTGTGGATATATACCCTCCTGGCCTGCCTCGAGAAGCC
GTTGGGAAGCGGTGAGCGGTCGATCCCAAGTTTCCATTGAATTGGTTGAC
CCGTGACACTCGGCGAATGTATGTGTGGGGGAGAGAGTAACGACGGTTCT
GCTCGGGCGAAAGCAATCGTAGAAGAGGTCACGAGGCGTATATATCAAGC
TTCAAACTATTCTCGAACGGAAAAGGTCGTGTTTCCTGTCGAGATGTTTT
GCGCGCCTCGTGGCCTCCTCAGGACCGCAAACACGCACGTTTGAAGATCT
TATGTGTGTACCGCGCGTCCCCCTTCCCTACTCCTTGAGTCTTGCGCTAT
ATTTCGTTGATGGCGACCTCCGGTTATTGTCAACTGATGTGAAACGTTTC
CCCGCGTAGAGACGGCGGCCTTGGTGAGGGAGATTCTCCGGAGATGCTGT
GCACAGAGGGCGGAAGTGGTAAGCCCGGTAGCTATAGACGTACGCGAGAC
GCGATGGTTTCCGTATCAGGCGTAGCTAGGAAGTCGACCATCCGCCGCCG
AGATGAGGCTTGTGTCTTATCTGGGCAATCCGCGCTCACCTTGCAAGCAT
AAGCATTGACGCTATCGTGTGGTACCTGATTGATCACACCCCTGCTGCAC
GGTAGCGGTACCTTTGTCCAACTCAATTTTTCTCCCCTTGACAAGCTCCA
GTTGCTCGGCGTGTGTACGGTACAGGAGACGCCGCTTGATGACAACCTGC
CGGCTCTCAACGTGATCGTCGCAATAACCGGAAGATTCTTCCAGCAAGCC
GAGGCGGTGTACTGA

Coding sequence (CDS) from alignment at H-elongata_contig113696:328..1142+

>mRNA_H-elongata_contig113696.1093.1 ID=mRNA_H-elongata_contig113696.1093.1|Name=mRNA_H-elongata_contig113696.1093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig113696:328..1142+ (Himanthalia elongata Himel1 dioecious)
AGGGCTCGTGCGGTGTGGATATATACCCTCCTGGCCTGCCTCGAGAAGCC
GTTGGGAAGCGAGGGCTCGTGCGGTGTGGATATATACCCTCCTGGCCTGC
CTCGAGAAGCCGTTGGGAAGCGAGACGGCGGCCTTGGTGAGGGAGATTCT
CCGGAGATGCTGTGCACAGAGGGCGGAAGTGAGACGGCGGCCTTGGTGAG
GGAGATTCTCCGGAGATGCTGTGCACAGAGGGCGGAAGTGGAGACGCCGC
TTGATGACAACCTGCCGGCTCTCAACGTGATCGTCGCAATAACCGGAAGA
TTCTTCCAGCAAGCCGAGGCGGTGTACTGAGAGACGCCGCTTGATGACAA
CCTGCCGGCTCTCAACGTGATCGTCGCAATAACCGGAAGATTCTTCCAGC
AAGCCGAGGCGGTGTACTGA