mRNA_H-elongata_contig113353.1079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113353.1079.1
Unique NamemRNA_H-elongata_contig113353.1079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: D8LQH0_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH0_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.860e-33
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 ELTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            EL+W VLE SYP YP + D+K+  E    L+DIA YVQIGP  INEHASAHRAYIMFRTLGLRHLVVVNHYNEV+G+ITRENL
Sbjct:  382 ELSWSVLERSYPHYPMLQDIKIGGEHWHCLMDIAPYVQIGPHCINEHASAHRAYIMFRTLGLRHLVVVNHYNEVMGMITRENL 464
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A836CM41_9STRA (Chloride channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM41_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.990e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    4 LTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            L W  LEG YP+YP +  L + EE    L+D+AAYVQ+GP  +NEHASAHRAY MFRTLGLRHL VVNH+NEVVGII+RENL
Sbjct:  538 LAWGDLEGRYPKYPRMEHLDLSEEDGRCLIDLAAYVQVGPHSMNEHASAHRAYEMFRTLGLRHLTVVNHFNEVVGIISRENL 619
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A7S2B9U1_9STRA (Chloride channel protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B9U1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.890e-20
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 LTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            +T+E+LE  YP YPSI D+ +  E+LDY +D+  Y+   P  I   AS HRAY+MFRT+GLRHL VV++   VVG++TR+NL
Sbjct:  301 ITYEILESVYPNYPSIHDINISGEELDYWLDLRPYLNSTPYNIQSRASVHRAYVMFRTMGLRHLPVVDNKMCVVGVLTRKNL 382
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A161MJ05_TRIIF (H(+) cl(-) exchange transporter 7 (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161MJ05_TRIIF)

HSP 1 Score: 86.7 bits (213), Expect = 9.880e-20
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    1 ELTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            E+T +     YP+YP I D+ +PEE+++Y +D+  Y+   P  + + AS  R + +FR LGLRHL+VVN  NEVVG++TR++L
Sbjct:   52 EITVKTFRDKYPRYPEIKDIYIPEEEMEYTIDLTPYMNPSPYTVQQVASLPRIFRLFRALGLRHLIVVNEINEVVGMVTRKDL 134
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A7S2XUS9_9STRA (Chloride channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.860e-18
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    4 LTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            L W VLEG YP+YP+  DL V   + +  +D+  Y    P +I E  S  R Y +FRTLGLRH++V+N++N+VVG+ITR++L
Sbjct:  512 LQWGVLEGMYPRYPNPEDLIVTSAERECWIDLRPYTNAAPYIIQESTSVERTYRLFRTLGLRHIIVINNHNQVVGMITRKDL 593
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A7S0UJS8_9STRA (Chloride channel protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJS8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.260e-18
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   10 WEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            W+ +E +YP+YPSI D ++ E   +  +D+  Y    P  INE AS  R Y +FRTLGLR L VVNH N+VVGIITR++L
Sbjct:  636 WDTIERAYPRYPSIDDFEIGEADRNCWLDLRPYANTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDL 715
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A1Z5JAK4_FISSO (Chloride channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 9.970e-18
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   10 WEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            W+ +E +YP+YP ISD+ + E+  +  +D+  Y    P  INE AS  R Y +FRTLGLR L VVNH N+VVGIITR++L
Sbjct:  759 WDTIEKAYPRYPRISDVHLREQDRNCWLDLRPYANTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDL 838
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A7R9ZRT7_9STRA (Chloride channel protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRT7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.820e-17
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   10 WEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            W+ +E +YP+YP+I D+ + E   +  +D+  Y    P  +NE AS  R Y +FRTLGLR L VVNH N+VVGIITR++L
Sbjct:  215 WDTIERAYPRYPTIDDVDMRESDQNCWLDLRPYANTAPYTVNETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDL 294
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A1E7FXI3_9STRA (Chloride channel protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXI3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.850e-17
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   10 WEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            W+ +E +YP+YP+I D+ + E   +  +D+  Y    P  INE AS  R Y +FRTLGLR L VVNH N+VVGIITR++L
Sbjct:  692 WDTIERAYPRYPNIDDIDIGEADRNCWLDLRPYANTAPYTINETASIQRTYRLFRTLGLRFLCVVNHNNQVVGIITRKDL 771
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BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Match: A0A3P3YDK2_PLABS (Chloride channel protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YDK2_PLABS)

HSP 1 Score: 85.1 bits (209), Expect = 1.850e-17
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    4 LTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASAHRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL 249
            LT+  LEG YP++P +S + + +  LD  VD+  Y+   P VI EH+ A  A+ +FRT+GLRHL VVN+ N++ G+ITR+NL
Sbjct:  662 LTYMDLEGCYPRFPDVSSVSLDDSDLDLWVDLTPYMNPSPYVIQEHSPATHAFDLFRTMGLRHLCVVNNKNQITGMITRKNL 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113353.1079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH0_ECTSI1.860e-3374.70Chloride channel protein n=1 Tax=Ectocarpus silicu... [more]
A0A836CM41_9STRA1.990e-2868.29Chloride channel protein n=1 Tax=Tribonema minus T... [more]
A0A7S2B9U1_9STRA2.890e-2052.44Chloride channel protein n=1 Tax=Dictyocha speculu... [more]
A0A161MJ05_TRIIF9.880e-2044.58H(+) cl(-) exchange transporter 7 (Fragment) n=1 T... [more]
A0A7S2XUS9_9STRA3.860e-1847.56Chloride channel protein n=1 Tax=Fibrocapsa japoni... [more]
A0A7S0UJS8_9STRA7.260e-1851.25Chloride channel protein n=1 Tax=Pseudo-nitzschia ... [more]
A0A1Z5JAK4_FISSO9.970e-1851.25Chloride channel protein n=2 Tax=Fistulifera solar... [more]
A0A7R9ZRT7_9STRA1.820e-1748.75Chloride channel protein n=1 Tax=Craspedostauros a... [more]
A0A1E7FXI3_9STRA1.850e-1750.00Chloride channel protein n=1 Tax=Fragilariopsis cy... [more]
A0A3P3YDK2_PLABS1.850e-1747.56Chloride channel protein n=2 Tax=Plasmodiophora br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113353contigH-elongata_contig113353:181..749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.9e-28
Seed eggNOG ortholog2880.D8LQH0
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.Chloride Channel
EggNOG OGsCOG0038@1,KOG0474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.940967-CDS-H-elongata_contig113353:180..3161622929653.940967-CDS-H-elongata_contig113353:180..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113353 181..316 +
1691679107.0238984-CDS-H-elongata_contig113353:180..3161691679107.0238984-CDS-H-elongata_contig113353:180..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113353 181..316 +
1622929653.960682-CDS-H-elongata_contig113353:636..7491622929653.960682-CDS-H-elongata_contig113353:636..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113353 637..749 +
1691679107.0366223-CDS-H-elongata_contig113353:636..7491691679107.0366223-CDS-H-elongata_contig113353:636..749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113353 637..749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113353.1079.1prot_H-elongata_contig113353.1079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113353 181..749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113353.1079.1

>prot_H-elongata_contig113353.1079.1 ID=prot_H-elongata_contig113353.1079.1|Name=mRNA_H-elongata_contig113353.1079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
ELTWEVLEGSYPQYPSISDLKVPEEKLDYLVDIAAYVQIGPPVINEHASA
HRAYIMFRTLGLRHLVVVNHYNEVVGIITRENL
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mRNA from alignment at H-elongata_contig113353:181..749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113353.1079.1 ID=mRNA_H-elongata_contig113353.1079.1|Name=mRNA_H-elongata_contig113353.1079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=569bp|location=Sequence derived from alignment at H-elongata_contig113353:181..749+ (Himanthalia elongata Himel1 dioecious)
GAACTGACATGGGAAGTTCTCGAGGGATCTTATCCGCAGTACCCCTCAAT
TAGCGACCTCAAGGTCCCGGAAGAAAAGCTTGATTACCTCGTGGATATCG
CAGCATACGTGCAGATTGGGCCCCCTGTTATCAACGGTGAGTTCGGATAT
TGATTTGGGTGCCTCTGAAATATATCAAATGAGTGTTGAGCCAGAATCAC
CTCGACGGGCACATACAATATCGATCATCACAAGAAGCCCGAAGACGATA
CCGACAGCGTGGGTAACCAACTGACACATCTTCGCTCGTTTTGGATATAT
TTAACGTTGCAAGGTGAAAAGCGAATTTGAGTATACCCTGCGAGCGTCAC
ATGCGTAAATATCATGCATGGGGTCTCAATACATCCTACCCCGTTGAGAT
CGTTCTGAAATGTCCACGCGATGCCAACCCGGGGCATGCCTTCCCAACCC
GCGCAGAGCACGCGTCCGCGCATCGTGCATACATTATGTTCCGCACATTG
GGTCTCCGCCATCTCGTCGTGGTCAACCATTATAACGAAGTGGTGGGCAT
AATCACGAGAGAGAATCTC
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Coding sequence (CDS) from alignment at H-elongata_contig113353:181..749+

>mRNA_H-elongata_contig113353.1079.1 ID=mRNA_H-elongata_contig113353.1079.1|Name=mRNA_H-elongata_contig113353.1079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig113353:181..749+ (Himanthalia elongata Himel1 dioecious)
GAACTGACATGGGAAGTTCTCGAGGGATCTTATCCGCAGTACCCCTCAAT
TAGCGACCTCAAGGTCCCGGAAGAAAAGCTTGATTACCTCGTGGATATCG
CAGCATACGTGCAGATTGGGCCCCCTGTTATCAACGGAACTGACATGGGA
AGTTCTCGAGGGATCTTATCCGCAGTACCCCTCAATTAGCGACCTCAAGG
TCCCGGAAGAAAAGCTTGATTACCTCGTGGATATCGCAGCATACGTGCAG
ATTGGGCCCCCTGTTATCAACGAGCACGCGTCCGCGCATCGTGCATACAT
TATGTTCCGCACATTGGGTCTCCGCCATCTCGTCGTGGTCAACCATTATA
ACGAAGTGGTGGGCATAATCACGAGAGAGAATCTCAGCACGCGTCCGCGC
ATCGTGCATACATTATGTTCCGCACATTGGGTCTCCGCCATCTCGTCGTG
GTCAACCATTATAACGAAGTGGTGGGCATAATCACGAGAGAGAATCTC
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